BAC Information

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BAC

Clone NameB6Ng01-215E03
Chromosome18 (Build37)
Map Location 86,847,318 - 86,976,051
singlet/doubletdoublet
Overlap geneCbln2, LOC100039872, LOC100039881, LOC665437
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
Downstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E03.bB6Ng01-215E03.g
ACCGA032281GA032282
length1,186921
definitionB6Ng01-215E03.b B6Ng01-215E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,847,318 - 86,848,519)(86,975,118 - 86,976,051)
sequence
gaattcagtctttcagtaagcaaattgataagtgacctgaggtgaagcgg
attataaaatgctttttattcaatggttaaaaatgttagttccctgaaaa
catataaagacatattattaaatgaaaaaataacatgaaaagatgagaaa
ctgtgacattcaaaagtatatgacagatggaagaaaagtatatatggaga
tagtctaaaatcagtggttcctagtgtaggggaataaggagaaatgaact
agcagtgtggtgtgcacactcttttccttaacactttgccatgttttcta
aatttaattcatgtttaaaatactacatagtgtgatattcagatatatga
tagatatatgaatcaacaaagaaatgtattatttattctgaatgcatact
aatttacatctagatttttgaatcttatagtgaattatccctacctttga
tcactattgttcatttatcaatgcaaataagcacaaatagcagccattgt
tcaactttcttccacaagtaagttctcttactctcaccttgtaaaagaaa
ataagctttaaatttatgttttattgttaatttttagatagatgcatagc
ttcccccaaaaagctagttttcaagggtaccaatttcttgggaggtatca
gctataagcaaggattatgtccaagatggtcttgcttctgtgtgtgtcct
gttagacatctttcacgatgaatctgatcaaaaggaatgcacaatcagtt
tgagtgtgaggtgtgcatgatcgcttcttcctttttatcttccagaaagc
tttgatgttgtggaaactttttgaagacacaaaatataaacaatcagaca
ctgtgcagatcatctgtcacatcccacaggatagaatagcattagctttt
tcatgctgagccattaaatgtggtgatggtgatgttgatgctgctgttgt
tgcttaagcgatatcgtgtaaagagtacactgatactatcactccaatgt
ctataaatctatttccacatcattatagctatgatttatctgagtctctc
tataacttatgattagcaatatctatcacagcagtctgcacaataccaaa
tctaacgtcacttataacatacgattcgcatgcttcatagtgtgttccaa
caccaagacctacaaaaatctgcattctccgaatga
gaattctgggagctctcagacactgagcaaccaacagaagagtatacaga
ggatagactgaggccttggcatatgtgtggcagagggctgccttttctgg
tctcagtgggaggggatactcttatcctggcaaagacttgatatactagg
gtgggaggatactaaagaggtactctcgctctcagagaaaaagggttgat
gatggagggtctttgcgaaaggggaccaggagaaggagcagcaattatta
aataaataaattaaaatacaatacaaatataaaaatattttcaattaagg
aaagagactgaaaaagaattggacatttataagcagatgttagtcagttt
tattttgattgggaatcacataaaattttacattaataacacatcaattc
tgactgtctcgggtactaatcataagataaacatcttattaatttaattt
tctgagttctgaatcaatagaagatcattcaagtccagatggtatctgca
tccatttgaggatctggttttaagacctattcatagtatgttaagttttt
tttttttgttttttttttgtttttttttctgagatagggtttctctgtat
agccctggctgtcctggaactcattttgtagaccaggctggccttgaact
caaaatctgcctgcctctgcctcttgagtgcagggattataggcacgtgt
caccactctcggctaggatcatttatatttttccacatttttcttccgga
ttactactgacgtgcattgcgggaacacttgcctatatgtacaatgatcc
atgacttttgaaaatgctaattggcatattaattgtctgtgaaagaaccc
atgggcgaacgagttacagaggagtttcttgggggatactgtgctagagg
atactgtcatgacatcaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86847318_86848519
seq2: B6Ng01-215E03.b_43_1228

seq1  GAATTCAGTCATTTCAGTAAGCAAATTGATAAGTGACCTGAGGTGAAGCA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GAATTCAGTC-TTTCAGTAAGCAAATTGATAAGTGACCTGAGGTGAAGCG  49

seq1  GATTATAAAATGCTTTTTATTCAATGGTTAAAAATGTTAGTTCCCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAAATGCTTTTTATTCAATGGTTAAAAATGTTAGTTCCCTGAAA  99

seq1  ACATATAAAGACATATTATTAAATGAAAAAATAACATGAAAAGATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAGACATATTATTAAATGAAAAAATAACATGAAAAGATGAGAA  149

seq1  ACTGTGACATTCAAAAGTATATGACAGATGGAAGAAAAGTATATATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACATTCAAAAGTATATGACAGATGGAAGAAAAGTATATATGGAG  199

seq1  ATAGTCTAAAATCAGTGGTTCCTAGTGTAGGGGAATAAGGAGAAATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTAAAATCAGTGGTTCCTAGTGTAGGGGAATAAGGAGAAATGAAC  249

seq1  TAGCAGTGTGGTGTGCACACTCTTTTCCTTAACACTTTGCCATGTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGTGGTGTGCACACTCTTTTCCTTAACACTTTGCCATGTTTTCT  299

seq1  AAATTTAATTCATGTTTAAAATACTACATAGTGTGATATTCAGATATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTCATGTTTAAAATACTACATAGTGTGATATTCAGATATATG  349

seq1  ATAGATATATGAATCAACAAAGAAATGTATTATTTATTCTGAATGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATATGAATCAACAAAGAAATGTATTATTTATTCTGAATGCATAC  399

seq1  TAATTTACATCTAGATTTTTGAATCTTATAGTGAATTATCCCTACCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATCTAGATTTTTGAATCTTATAGTGAATTATCCCTACCTTTG  449

seq1  ATCACTATTGTTCATTTATCAATGCAAATAAGCACAAATAGCAGCCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATTGTTCATTTATCAATGCAAATAAGCACAAATAGCAGCCATTG  499

seq1  TTCAACTTTCTTCCACAAGTAAGTTCTCTTACTCTCACCTTGTAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTTCTTCCACAAGTAAGTTCTCTTACTCTCACCTTGTAAAAGAA  549

seq1  AATAAGCTTTAAATTTATGTTTTATTGTTAATTTTTAGATAGATGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTTTAAATTTATGTTTTATTGTTAATTTTTAGATAGATGCATAG  599

seq1  CTTCCCCCAAAAAGCTAGTTTTCAAGGGTACCAATTTCTTGGGAGGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAAAAAGCTAGTTTTCAAGGGTACCAATTTCTTGGGAGGTATC  649

seq1  AGCTATAAGCAAGGATTATGTCCAAGATGGTCTTGCTTCTGTGTGTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAGCAAGGATTATGTCCAAGATGGTCTTGCTTCTGTGTGTGTCC  699

seq1  TGTTAGACATCTTTCACAATGAATCTGATCAAAAGGAATGCACAATCAGT  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTAGACATCTTTCACGATGAATCTGATCAAAAGGAATGCACAATCAGT  749

seq1  TTGAGTGTGAGGTGTGCATGATCGCTTCTTCCATTTTTATCTTCCAGAAA  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGAGTGTGAGGTGTGCATGATCGCTTCTTCC-TTTTTATCTTCCAGAAA  798

seq1  GCTTTGAGGTTGTGGAAACTTTTTGAAGACACAAAATAGAAACAATCAGA  850
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTTGATGTTGTGGAAACTTTTTGAAGACACAAAATATAAACAATCAGA  848

seq1  GACTGTGCAGATCATCTGTCACATCCCACAGGAAAGAAGAACATTAGCTT  900
       |||||||||||||||||||||||||||||||| |||| | |||||||||
seq2  CACTGTGCAGATCATCTGTCACATCCCACAGGATAGAATAGCATTAGCTT  898

seq1  TTTCATGCTGAGTCCATTAAATGTTGGTGATGGTGATGTTGTTGCTGCTG  950
      |||||||||||| |||||||||| ||||||||||||||||| ||||||||
seq2  TTTCATGCTGAG-CCATTAAATG-TGGTGATGGTGATGTTGATGCTGCTG  946

seq1  TTGTTGTTAGAAAGCAAATATTGTGTAAATGAGTACACTGCACACTAACA  1000
      |||||| |   ||||  |||| ||||||| |||||||||| | |||| | 
seq2  TTGTTGCT--TAAGC-GATATCGTGTAAA-GAGTACACTG-ATACTATC-  990

seq1  ACACCAAACATCTATAAATCTAGTTTTCCAAAAGCAT--TTTTACATATG  1048
      || || ||  ||||||||||||  ||||||    |||  || ||  ||||
seq2  ACTCC-AATGTCTATAAATCTA--TTTCCA----CATCATTATAGCTATG  1033

seq1  ATTTTTCTGATTTTCCCTATAACTTTATGAGT-GGAAAATCTACCAGAAC  1097
      |||| ||||| | || ||||||| |||||| | | || ||||| || | |
seq2  ATTTATCTGAGTCTCTCTATAAC-TTATGATTAGCAATATCTATCACAGC  1082

seq1  AAGTTG-AAAATACC-CATCTAACGT-ATTTA----AAATTAGTTGTATC  1140
      |   || | ||||||  ||||||||| | |||    | |  | | | || 
seq2  AGTCTGCACAATACCAAATCTAACGTCACTTATAACATACGATTCGCAT-  1131

seq1  ACTTCATTTTTTTTCTAAAAAACAAAAACAAACAAAAAAATCTGCAAAAT  1190
       ||||||  | | | |  || || || ||  ||  ||||||||||   ||
seq2  GCTTCATAGTGTGT-TCCAACACCAAGACCTAC--AAAAATCTGC---AT  1175

seq1  TCTCCAGAATGA  1202
      ||||| ||||||
seq2  TCTCC-GAATGA  1186

seq1: chr18_86975118_86976051
seq2: B6Ng01-215E03.g_63_983 (reverse)

seq1  GCCTTGATGGTCATGGACCTTAATCCTCTAAAACAGTAAACCCCCAAAGA  50
      |||||||| ||||| |||  | ||||||||  |||||  | |||| ||||
seq2  GCCTTGAT-GTCAT-GACAGT-ATCCTCTAGCACAGT--ATCCCCCAAGA  45

seq1  AACTCTTCTGTAACTTGTTTGCCCATGGTGTTTTATCACAGAACAATTAA  100
      ||||| ||||||||| ||| |||||||| ||| | |||||| |||||| |
seq2  AACTCCTCTGTAACTCGTTCGCCCATGG-GTTCTTTCACAG-ACAATT-A  92

seq1  ATCTGCCAATTAGCATATTTCAAAAGTCATGGATCATTTGTACAAATAGA  150
      || ||||||||||||| ||||||||||||||||||| ||||||| |||| 
seq2  ATATGCCAATTAGCAT-TTTCAAAAGTCATGGATCA-TTGTACATATAGG  140

seq1  CAAGTGTTCCCACAATGCACTTTAGTAGTAATTTAGGAAGAAAAATGTTG  200
      ||||||||||| |||||||| | |||||||| |  |||||||||||| ||
seq2  CAAGTGTTCCCGCAATGCACGTCAGTAGTAA-TCCGGAAGAAAAATG-TG  188

seq1  GAAAAATATAAATGATCCTAGCCGAGAGTGGTGACACGTGCCTATAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATAAATGATCCTAGCCGAGAGTGGTGACACGTGCCTATAATCC  238

seq1  CTGCACTCAAGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCT  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCACTCAAGAGGCAGAGGCAGGCAGATTT-TGAGTTCAAGGCCAGCCT  287

seq1  GGTCTACAAAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAAAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTA  337

seq1  TCTCAGAAAAAAAAACAAAAAAAAAACAAAAAAAAAAAACTTAACATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAAAAAAACAAAAAAAAAACAAAAAAAAAAAACTTAACATACT  387

seq1  ATGAATAGGTCTTAAAACCAGATCCTCAAATGGATGCAGATACCATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGGTCTTAAAACCAGATCCTCAAATGGATGCAGATACCATCTGG  437

seq1  ACTTGAATGATCTTCTATTGATTCAGAACTCAGAAAATTAAATTAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATGATCTTCTATTGATTCAGAACTCAGAAAATTAAATTAATAAG  487

seq1  ATGTTTATCTTATGATTAGTACCCGAGACAGTCAGAATTGATGTGTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCTTATGATTAGTACCCGAGACAGTCAGAATTGATGTGTTATT  537

seq1  AATGTAAAATTTTATGTGATTCCCAATCAAAATAAAACTGACTAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATTTTATGTGATTCCCAATCAAAATAAAACTGACTAACATCT  587

seq1  GCTTATAAATGTCCAATTCTTTTTCAGTCTCTTTCCTTAATTGAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAATGTCCAATTCTTTTTCAGTCTCTTTCCTTAATTGAAAATAT  637

seq1  TTTTATATTTGTATTCTATTTTAATTTATTTATTTAATAATTGCTGCTCC  700
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTGTATTGTATTTTAATTTATTTATTTAATAATTGCTGCTCC  687

seq1  TTCTCCTGGTCCCCTTTCGCAAAGACCCTCCATCATCAACCCTTTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGTCCCCTTTCGCAAAGACCCTCCATCATCAACCCTTTTTCTC  737

seq1  TGAGAGCGAGAGTACCTCTTTAGTATCCTCCCACCCTAGTATATCAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCGAGAGTACCTCTTTAGTATCCTCCCACCCTAGTATATCAAGTC  787

seq1  TTTGCCAGGATAAGAGTATCCCCTCCCACTGAGACCAGAAAAGGCAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGGATAAGAGTATCCCCTCCCACTGAGACCAGAAAAGGCAGCCC  837

seq1  TCTGCCACACATATGCCAAGGCCTCAGTCTATCCTCTGTATACTCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACACATATGCCAAGGCCTCAGTCTATCCTCTGTATACTCTTCTG  887

seq1  TTGGTTGCTCAGTGTCTGAGAGCTCCCAGAATTC  934
      ||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCTCAGTGTCTGAGAGCTCCCAGAATTC  921