BAC Information

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BAC

Clone NameB6Ng01-215N10
ChromosomeX (Build37)18 (Build37)
Map Location 49,101,555 - 49,101,98455,608,624 - 55,609,516
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2
Downstream geneUsp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215N10.bB6Ng01-215N10.g
ACCGA032689GA032690
length424901
definitionB6Ng01-215N10.b B6Ng01-215N10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,101,555 - 49,101,984)(55,608,624 - 55,609,516)
sequence
agaatcaaagtaccctagttgacatttattctctctaaaaggaagttgag
agataagccgtcacctcattttcatgcttcagttggctgtgttggtagca
tgagaggctactgccggatggttttattaggtggttacagttcaagatgt
gcatcagtaacagatacagtgtacatcactctggcccctccatttatgac
ccaccatcctggttcatggctcaattttgactcacccactaagaatattc
caaaggtgaaaccacagaaatgtttgtttctgtaacttaaaagtgtgtgt
aaggcctgggaagatgtataaatcacttaaccatacaagcataaggactg
aaggtcaggtaccccacacctaacatgaaagcctgatgtgcatggtggaa
gactgggtatctggggggtggggg

gaattcattcttggaatgtttatttagctaaaaatggtcagaacgtctct
ctcaatgtaatgtaaagatattcttataatttatgatttttattattact
atggtaagttacaattatttacctgtgtatacatgttgtgggcacactta
gcattgctcatgtgtggaggtcagagtacaacttggaattggtgcctttc
tccttccaccatggcaggccagactcaggtccacagccgtgacaacaagc
actattatccaaccacactctctgtttgtttgtttataattacaaaccaa
aaggaaatgaaagaatttctgctccagaagccaactggctattcataata
aacttggtgtttggaatttaaccaagatttgtgtttggcctgcaggggag
agggtcttctattctctttcttcaggaagtccattcagaaatcttacaga
ttctctctgtcaagagactatgatgaagaagctcttgagcaatagtaaaa
ctactttctttgctgtatctgaagactggtttgtttatacaccactattc
cttcaaatacttcattactaacttcctgtttagactcctggagactagca
aatagatggccacacctgtaacagtcatagagtttcaggcagtgaagggc
ttttatatttggagaatgatgcagcatagaacaattgttttcattgttgt
tgtttgtttgttttgttttttttttcacaaaatcttgcaacgaaaataac
aactctcaagataatgctatttgtcaatcaaattgagcaccccttgccca
tttctaaattgtttctttcttctcgggtttcactgcagctgaataagctg
tctttccatatttgtcttccacaatataatattagggtaattaatgttgg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49101555_49101984
seq2: B6Ng01-215N10.b_46_475 (reverse)

seq1  CCCCCACCCCCCAGATACCCAGTCTTCCACCATGCACATCAGGCTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCAGATACCCAGTCTTCCACCATGCACATCAGGCTTTCAT  50

seq1  GTTAGGTGTGGGGTACCTGACCTTCAGTCCTTATGCTTGTATGGTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGTGGGGTACCTGACCTTCAGTCCTTATGCTTGTATGGTTAAGT  100

seq1  GATTTATACATCTTCCCAGGCCTTACACACACTTTTAAGTTACAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATACATCTTCCCAGGCCTTACACACACTTTTAAGTTACAGAAACA  150

seq1  AACATTTCTGTGGTTTCACCTTTGGAATATTCTTAGTGGGTGAGTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTGTGGTTTCACCTTTGGAATATTCTTAGTGGGTGAGTCAAAA  200

seq1  TTGAGCCATGAACCAGGATGGTGGGTCATAAATGGAGGGGCCAGAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCATGAACCAGGATGGTGGGTCATAAATGGAGGGGCCAGAGTGAT  250

seq1  GTACACTGTATCTGTTACTGATGCACATCTTGAACTGTAACCACCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTATCTGTTACTGATGCACATCTTGAACTGTAACCACCTAATA  300

seq1  AAACCATCCGGCAGTAGCCTCTCATGCTACCAACACAGCCAACTGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCGGCAGTAGCCTCTCATGCTACCAACACAGCCAACTGAAGCA  350

seq1  TGAAAATGAGGTGACGGCTTATCTCTCAACTTCCTTTTAGAGAGAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAGGTGACGGCTTATCTCTCAACTTCCTTTTAGAGAGAATAAA  400

seq1  TGTCAACTAGGGTACTTTGATTCTGAATTC  430
      ||||||||||||||||||||||||||||||
seq2  TGTCAACTAGGGTACTTTGATTCTGAATTC  430


seq1: chr18_55608624_55609516
seq2: B6Ng01-215N10.g_67_967 (reverse)

seq1  GGCAACATTAATTACCCTAATATTATATTGTGGAAGAC-AATATGGAAAG  49
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCAACATTAATTACCCTAATATTATATTGTGGAAGACAAATATGGAAAG  50

seq1  ACAGCTTATTCAGCTGCAGTGAAACCCGAGAAGAAAGAAAC-ATTTAG-A  97
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  ACAGCTTATTCAGCTGCAGTGAAACCCGAGAAGAAAGAAACAATTTAGAA  100

seq1  ATGGGCAAGGGGTGCTCAATTTGATTGACAAATAGCATTATCTTGAGAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAGGGGTGCTCAATTTGATTGACAAATAGCATTATCTTGAGAGT  150

seq1  TGTTATTTTCGTTGCAAGA-TTTGTGAAAAAAAAAACAAAACAAACAAAC  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTATTTTCGTTGCAAGATTTTGTGAAAAAAAAAACAAAACAAACAAAC  200

seq1  AACAACAATGAAAAC-ATTGTTCTATGCTGCATCATTCTCCAAATAT-AA  244
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AACAACAATGAAAACAATTGTTCTATGCTGCATCATTCTCCAAATATAAA  250

seq1  AGCCCTTCACTGCCTG-AACTCTATGACTGTTACAGGTGTGGCCATCTA-  292
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AGCCCTTCACTGCCTGAAACTCTATGACTGTTACAGGTGTGGCCATCTAT  300

seq1  TTGCTAGTCTCCAGGAGTCTAAACAGGAAGTTAGTAATGAAGTATTTGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTCTCCAGGAGTCTAAACAGGAAGTTAGTAATGAAGTATTTGAA  350

seq1  GGAATAGTGGTGTATAAACAAACCAGTCTTCAGATACAGCAAAGAAAGTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGGTGTATAAACAAACCAGTCTTCAGATACAGCAAAGAAAGTA  400

seq1  GTTTTACTATTGCTCAAGAGCTTCTTCATCATAGTCTCTTGACAGAGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTATTGCTCAAGAGCTTCTTCATCATAGTCTCTTGACAGAGAGA  450

seq1  ATCTGTAAGATTTCTGAATGGACTTCCTGAAGAAAGAGAATAGAAGACCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAGATTTCTGAATGGACTTCCTGAAGAAAGAGAATAGAAGACCC  500

seq1  TCTCCCCTGCAGGCCAAACACAAATCTTGGTTAAATTCCAAACACCAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTGCAGGCCAAACACAAATCTTGGTTAAATTCCAAACACCAAGT  550

seq1  TTATTATGAATAGCCAGTTGGCTTCTGGAGCAGAAATTCTTTCATTTCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAATAGCCAGTTGGCTTCTGGAGCAGAAATTCTTTCATTTCCT  600

seq1  TTTGGTTTGTAATTATAAACAAACAAACAGAGAGTGTGGTTGGATAATAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGTAATTATAAACAAACAAACAGAGAGTGTGGTTGGATAATAG  650

seq1  TGCTTGTTGTCACGGCTGTGGACCTGAGTCTGGCCTGCCATGGTGGAAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTGTCACGGCTGTGGACCTGAGTCTGGCCTGCCATGGTGGAAGG  700

seq1  AGAAAGGCACCAATTCCAAGTTGTACTCTGACCTCCACACATGAGCAATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCACCAATTCCAAGTTGTACTCTGACCTCCACACATGAGCAATG  750

seq1  CTAAGTGTGCCCACAACATGTATACACAGGTAAATAATTGTAACTTACCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTGCCCACAACATGTATACACAGGTAAATAATTGTAACTTACCA  800

seq1  TAGTAATAATAAAAATCATAAATTATAAGAATATCTTTACATTACATTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAATAAAAATCATAAATTATAAGAATATCTTTACATTACATTGA  850

seq1  GAGAGACGTTCTGACCATTTTTAGCTAAATAAACATTCCAAGAATGAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACGTTCTGACCATTTTTAGCTAAATAAACATTCCAAGAATGAATT  900

seq1  C  893
      |
seq2  C  901


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