BAC Information

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BAC

Clone NameB6Ng01-215P13
Chromosome18 (Build37)
Map Location 29,070,697 - 29,264,013
singlet/doubletdoublet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215P13.bB6Ng01-215P13.g
ACCGA032787GA032788
length1,1771,048
definitionB6Ng01-215P13.b B6Ng01-215P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,262,824 - 29,264,013)(29,070,697 - 29,071,744)
sequence
gaattcacacatgagtagtagaatgcagtgaactctgacactgtaaatgc
ttgacatttttacttttcttgcattttaccttaattttcttgtctatttt
tcatttttgaaactaagcatatacagtaaacatataaacatataatttcc
tcccattacccagtttttctgattaacgaaatgcaagttgtccagtccat
ataatatttctttttgtctatgaattcagggctgactatttgagattagg
ataaccaaatcggtgtctttacttaggcaagattcccagagatggaggca
aacaatattcttattgagctctgacccttatgagctaaaataataaccaa
tgaggcaggatatccttaacagtgaaatagcatgcataccttgggaacca
aaagctctgtaacaagacttaagagctgctagacaagagacaatccatgc
ctggtattggaaacctatccatctgactgaagctaatacaatcatgatca
tagaggaaaactacaactttcagaaagattaaatcaccatgaatcctaac
tacactttaaatatttatccttatgtccacagataagtataaaatttcac
tcctcatcattgaaataagtccttgaaaaactgtataagattttaattat
agttatttttattgtgttggataaggaagaagtgtctcataacaaggtaa
caaaatatatttttaaaattatctttatatgaactgattctggtaaaaca
cgattgtgtgacattaaacattatggattcagatagtatttgtttactca
agaaaataggaagtaagatgataaataaaaaggagcacgggtaataaagt
ataattttgcatgatcatgaaaaaggaacatgttcttggagaaatggcta
ctgcaaaactctgtgtaagggaaagattaggaggaagatctctaaaattt
gtcaacttgtttagagcttggtgcttggtgtcatagaatgctgaaacatc
ctggggaaatcagctactgatcattcgacttcagcaaactattcttggca
atttggtacagcttcttagaacacagatcttattaacatctcttgaataa
tcaatcacctttcctattttcatgtaatgaactcaaaataagaatatttc
aacttgaagttgcaacctccaatgaga

gaattccatacctttccctctaattaaatcagttctaaactaaaacaaaa
tttttgtgggaaagtaaaagagcattctttgatcaaatttaaataaagct
tgcttaaacatttttcatactgaaattataatccatagttaaaaccatca
gtaaccgggcttcctccatatttagaactttggttcagccaatagtaaag
catgatcagctctagtacagaaaacactttctgtatctgattaattgctt
ttaagcagaacatgcaaagaagtttctacagaaaaaatccaattacagca
gaaaagacatgagcacgcatttgcttggaacatgtgcagatagtaataag
caaataaaaacaaccagcatcctcagatgttagagtttcccaactgaaat
ccatgatgagatgttgtcacccagtaattagaacgcctgttgctgtattc
ttctgtgcataacctcattttggtcaggagcatacaatgctttggtcaca
tatatttcctactggtgttcttgccaagttgattcctgaaagtacacact
cagagcatggcaatgatcaaagcctaatgctgtgggtttttttttttttt
ttttttgtcatcagtcactgtcttcattgtgaaaagcaccatcatttcct
ccacagtttccttacatgtggatttgaaacgaggaaaatgtgcaagagga
agcaagcagaaaaaagaaagagtgtactatagtatccaatttactagttt
agaaagatagaactagtaccaagcaatgacaacagtgatttgagatgtag
tgatcacagaaataactgtctactaattgtattacactgacagcaaacaa
ggttggagatctactataaatattgtaaatatggtgaggaagaatactac
cctgtggatgccaacaagtgcatgctgacagcagcctgacatagctgtct
cctaggaggcttctgtcagtgtctgacaaaaacaggaggtggatgccttt
cagccaacatgactgagccacatgtcccagtggagaaagctagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29262824_29264013
seq2: B6Ng01-215P13.b_51_1227 (reverse)

seq1  TCTCATTTGGAGTGTTGCAACACTCATGTTTTAAAAATAAATCTTAATTT  50
      ||||| |||||| ||||||||  ||| |||    |||| | |||| ||||
seq2  TCTCA-TTGGAG-GTTGCAAC-TTCAAGTT---GAAAT-ATTCTT-ATTT  42

seq1  TGAATTTCATTTTACATGAAAATAGG-AAGTTGA-TGATATATTCAAGAG  98
      || | ||||  ||||||||||||||| ||| ||| |||| ||||||||||
seq2  TG-AGTTCA--TTACATGAAAATAGGAAAGGTGATTGAT-TATTCAAGAG  88

seq1  ATGTT-ATTAGATCTGGTGTCCT-AGGAGCTGGTACCAAATTGCCAAAGA  146
      ||||| || |||||| |||| || || |||| ||||||||||||| ||||
seq2  ATGTTAATAAGATCT-GTGTTCTAAGAAGCT-GTACCAAATTGCC-AAGA  135

seq1  ATAGTTTGCTGAAGTCGAATGAATCCAGTAGCTGATTTTCCCCAGGATGT  196
      ||||||||||||||||||||||   |||||||||| ||||||||||||||
seq2  ATAGTTTGCTGAAGTCGAATGA--TCAGTAGCTGA-TTTCCCCAGGATGT  182

seq1  TTCAGCATTCTATGACACCAAGCACCAAGCTCTAAACAAG-TGACAAATT  245
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCAGCATTCTATGACACCAAGCACCAAGCTCTAAACAAGTTGACAAATT  232

seq1  TTAGAGATCTTCCTCCTAATCTTTCCCTTACACAGAGTTTTGCAGTAGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATCTTCCTCCTAATCTTTCCCTTACACAGAGTTTTGCAGTAGCC  282

seq1  ATTTCTCCAAGAACATGTTCCTTTTTCATGATCATGCAAAATTATACTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAAGAACATGTTCCTTTTTCATGATCATGCAAAATTATACTTT  332

seq1  ATTACCCGTGCTCCTTTTTATTTATCATCTTACTTCCTATTTTCTTGAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCGTGCTCCTTTTTATTTATCATCTTACTTCCTATTTTCTTGAGT  382

seq1  AAACAAATACTATCTGAATCCATAATGTTTAATGTCACACAATCGTGTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATACTATCTGAATCCATAATGTTTAATGTCACACAATCGTGTTT  432

seq1  TACCAGAATCAGTTCATATAAAGATAATTTTAAAAATATATTTTGTTACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAATCAGTTCATATAAAGATAATTTTAAAAATATATTTTGTTACC  482

seq1  TTGTTATGAGACACTTCTTCCTTATCCAACACAATAAAAATAACTATAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGAGACACTTCTTCCTTATCCAACACAATAAAAATAACTATAAT  532

seq1  TAAAATCTTATACAGTTTTTCAAGGACTTATTTCAATGATGAGGAGTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTATACAGTTTTTCAAGGACTTATTTCAATGATGAGGAGTGAA  582

seq1  ATTTTATACTTATCTGTGGACATAAGGATAAATATTTAAAGTGTAGTTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACTTATCTGTGGACATAAGGATAAATATTTAAAGTGTAGTTAG  632

seq1  GATTCATGGTGATTTAATCTTTCTGAAAGTTGTAGTTTTCCTCTATGATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGGTGATTTAATCTTTCTGAAAGTTGTAGTTTTCCTCTATGATC  682

seq1  ATGATTGTATTAGCTTCAGTCAGATGGATAGGTTTCCAATACCAGGCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGTATTAGCTTCAGTCAGATGGATAGGTTTCCAATACCAGGCATG  732

seq1  GATTGTCTCTTGTCTAGCAGCTCTTAAGTCTTGTTACAGAGCTTTTGGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCTCTTGTCTAGCAGCTCTTAAGTCTTGTTACAGAGCTTTTGGTT  782

seq1  CCCAAGGTATGCATGCTATTTCACTGTTAAGGATATCCTGCCTCATTGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTATGCATGCTATTTCACTGTTAAGGATATCCTGCCTCATTGGT  832

seq1  TATTATTTTAGCTCATAAGGGTCAGAGCTCAATAAGAATATTGTTTGCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTAGCTCATAAGGGTCAGAGCTCAATAAGAATATTGTTTGCCT  882

seq1  CCATCTCTGGGAATCTTGCCTAAGTAAAGACACCGATTTGGTTATCCTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGGGAATCTTGCCTAAGTAAAGACACCGATTTGGTTATCCTAA  932

seq1  TCTCAAATAGTCAGCCCTGAATTCATAGACAAAAAGAAATATTATATGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATAGTCAGCCCTGAATTCATAGACAAAAAGAAATATTATATGGA  982

seq1  CTGGACAACTTGCATTTCGTTAATCAGAAAAACTGGGTAATGGGAGGAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAACTTGCATTTCGTTAATCAGAAAAACTGGGTAATGGGAGGAAA  1032

seq1  TTATATGTTTATATGTTTACTGTATATGCTTAGTTTCAAAAATGAAAAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTTTATATGTTTACTGTATATGCTTAGTTTCAAAAATGAAAAAT  1082

seq1  AGACAAGAAAATTAAGGTAAAATGCAAGAAAAGTAAAAATGTCAAGCATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAAATTAAGGTAAAATGCAAGAAAAGTAAAAATGTCAAGCATT  1132

seq1  TACAGTGTCAGAGTTCACTGCATTCTACTACTCATGTGTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTCAGAGTTCACTGCATTCTACTACTCATGTGTGAATTC  1177


seq1: chr18_29070697_29071744
seq2: B6Ng01-215P13.g_68_1115

seq1  GAATTCCATACCTTTCCCTCTAATTAAATCAGTTCTAAACTAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCTTTCCCTCTAATTAAATCAGTTCTAAACTAAAACAAAA  50

seq1  TTTTTGTGGGAAAGTAAAAGAGCATTCTTTGATCAAATTTAAATAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGGAAAGTAAAAGAGCATTCTTTGATCAAATTTAAATAAAGCT  100

seq1  TGCTTAAACATTTTTCATACTGAAATTATAATCCATAGTTAAAACCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAACATTTTTCATACTGAAATTATAATCCATAGTTAAAACCATCA  150

seq1  GTAACCGGGCTTCCTCCATATTTAGAACTTTGGTTCAGCCAATAGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCGGGCTTCCTCCATATTTAGAACTTTGGTTCAGCCAATAGTAAAG  200

seq1  CATGATCAGCTCTAGTACAGAAAACACTTTCTGTATCTGATTAATTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAGCTCTAGTACAGAAAACACTTTCTGTATCTGATTAATTGCTT  250

seq1  TTAAGCAGAACATGCAAAGAAGTTTCTACAGAAAAAATCCAATTACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGAACATGCAAAGAAGTTTCTACAGAAAAAATCCAATTACAGCA  300

seq1  GAAAAGACATGAGCACGCATTTGCTTGGAACATGTGCAGATAGTAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACATGAGCACGCATTTGCTTGGAACATGTGCAGATAGTAATAAG  350

seq1  CAAATAAAAACAACCAGCATCCTCAGATGTTAGAGTTTCCCAACTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAACAACCAGCATCCTCAGATGTTAGAGTTTCCCAACTGAAAT  400

seq1  CCATGATGAGATGTTGTCACCCAGTAATTAGAACGCCTGTTGCTGTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGAGATGTTGTCACCCAGTAATTAGAACGCCTGTTGCTGTATTC  450

seq1  TTCTGTGCATAACCTCATTTTGGTCAGGAGCATACAATGCTTTGGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCATAACCTCATTTTGGTCAGGAGCATACAATGCTTTGGTCACA  500

seq1  TATATTTCCTACTGGTGTTCTTGCCAAGTTGATTCCTGAAAGTACACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCTACTGGTGTTCTTGCCAAGTTGATTCCTGAAAGTACACACT  550

seq1  CAGAGCATGGCAATGATCAAAGCCTAATGCTGTGGGTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATGGCAATGATCAAAGCCTAATGCTGTGGGTTTTTTTTTTTTTT  600

seq1  TTTTTTGTCATCAGTCACTGTCTTCATTGTGAAAAGCACCATCATTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCATCAGTCACTGTCTTCATTGTGAAAAGCACCATCATTTCCT  650

seq1  CCACAGTTTCCTTACATGTGGATTTGAAACGAGGAAAATGTGCAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTCCTTACATGTGGATTTGAAACGAGGAAAATGTGCAAGAGGA  700

seq1  AGCAAGCAGAAAAAAGAAAGAGTGTACTATAGTATCCAATTTACTAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGAAAAAAGAAAGAGTGTACTATAGTATCCAATTTACTAGTTT  750

seq1  AGAAAGATAGAACTAGTACCAAGCAATGACAACAGTGATTTGAGATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAGAACTAGTACCAAGCAATGACAACAGTGATTTGAGATGTAG  800

seq1  TGATCACAGAAATAACTGTCTACTAATTGTATTACACTGACAGCAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAGAAATAACTGTCTACTAATTGTATTACACTGACAGCAAACAA  850

seq1  GGTTGGAGATCTACTATAAATATTGTAAAATATGGTGAGGAAGAATACTA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTTGGAGATCTACTATAAATATTGT-AAATATGGTGAGGAAGAATACTA  899

seq1  CACTGTGGATGCCAACAAGTGCATGCTGACAGCAGCCTGACATAGCTGTC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGATGCCAACAAGTGCATGCTGACAGCAGCCTGACATAGCTGTC  949

seq1  TCCTAAGAGGC-TCTGTCAGTGCCTGACAAAAACA-GAGGTGGATG-CTT  997
      ||||| ||||| |||||||||| |||||||||||| |||||||||| |||
seq2  TCCTAGGAGGCTTCTGTCAGTGTCTGACAAAAACAGGAGGTGGATGCCTT  999

seq1  TCAGCCAACCATTGGACTGAGCACAAGGTCCCAGTGGAG-AAGCTAGAGA  1046
      |||||||| |||  ||||||||   | |||||||||||| ||||||||||
seq2  TCAGCCAA-CAT--GACTGAGCCACATGTCCCAGTGGAGAAAGCTAGAGA  1046

seq1  AA  1048
      ||
seq2  AA  1048


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