BAC Information

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BAC

Clone NameB6Ng01-218O13
Chromosome18 (Build37)
Map Location 45,094,564 - 45,095,676
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
Downstream geneLOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218O13.bB6Ng01-218O13.g
ACCGA034907GA034908
length1,2521,145
definitionB6Ng01-218O13.b B6Ng01-218O13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggaccatacttaaacatgataaaagcaatctacagcaaacca
ctagccaacaacaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctacccactttctccatacctattcaacattg
tactttaaatcctagccagagcaattcaacaacaaaaggaaatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagggaactcctaaacc
tgataaacagcttcagtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattag
ggaaacaactcccttctcaatagtcacaaatagtataaaataccttggcg
tgactctaaggaagtgaaagatctgtatgataagaacttcaagtctctga
agaaagaaattaaagatctcagaagatggaaagatctcccatgctcatga
attggcaggatcaatatagaaaaaatggctatcttaacaaaagcaatcta
cagattcaatgcaatccccatcaaaattccaactcaattcttcaatgaat
tagaaagagcaatctgcaaattcatcttgaataacaaaaaacctaggata
caaaaactcttctcaatgataaaagaacctctggtggaatcaccatgcct
aacctaaagttgtactacagagcaattgtgataaaaactgcatggtactt
gtatagtgacacacaaatagaccaatggaatagaattgaagacgtagaaa
tgaacccccacacctatggtctcttgatctttgacaatggagcttaaacc
atccagtgggaaaaagacagcattttccacaaatggtgctgtcacaactg
gcggctatcatgtagaagaatgtgaattgatccattcctatctccttgta
ctaaggtcaaatctagtggatcaaggaactcaattataaaccagagacag
tgaacttatagagggagaaagtggggaaaagcctcagaatatgggcaaca
ggggaaaattcctgaataggaacagccatgccttgtggctgtaagaatcg
agaatgaaaatggacctcatgaactgacaagctcctgcaggcaagaacta
ctcattagagaaaaagtccactccaacgaattggggaaggagaccttcta
tc
gaattcacttctatgtggttgaatggctgaggacccttttctgttgaagg
ctgttattaggtcccagagcccacctatgtggccctgtgccctgtggccc
tctccagaagcagttcctggcctggcagactacaaaaagcatctcttctg
ttagctgagatggaatcttttggaacacatccatcatggaggtggcattc
ccatcataaggttcatccatgctcagtgagattttgcaagagcttcaagg
tggagaagcagcaggtctcactctagggcaggtcctctatgaagcactca
tagttcctgtaaaaaccccagatccctatttactaagtcattatttaaga
gcaagtcccctttccagatcttattttacacccaaagccatgctggtcac
taaagggccacatatgctcctgggatgacttcagagtgatctctgcagct
gggtgagacttccccacataggcagcctcagctctgccctctacccaccc
cccgcccctcccccatatccctctttatctgacacaggaggttcttcatc
gaatgtgtaactgcaaaattatgtatttgttaaaattaaatgaagacagg
gaggggttcaagggccccattcctaactgaggagctatgaatagttggtg
gcttttgaattaggggagagtcagttttctttaagggtgccccccacccc
cacacgtattttgacaatactccagaagtatacgagcagcacagattgaa
gctgatgtgttgctaaattaaaatttaaaaaatccacaaaagttggggag
gggacagaggggtaaggggtgtatctggagggacttaaggagaggagctg
ggaattgaatataactttaaaacattgcaggaaatttcttaaaggaattt
gaatagaagttattttgttgaaaaagactttgagaataatactctccatt
ggggttctctaaaggacagtattttggtcacctttcttggaagttgaagc
tgtacgttcatgattccatattttatggaatatactattgtgcagccaaa
acaatatttgagaggtattctagattatgtgaatttcatggccatgtggc
tttctttgtactgaaatacaaacactacgcagctatgaaaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45094564_45095676
seq2: B6Ng01-218O13.g_64_1208

seq1  GAATTCACTTCTATGTGGTTGAATGGCTGAGGACCCTTTTCTGTTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTATGTGGTTGAATGGCTGAGGACCCTTTTCTGTTGAAGG  50

seq1  CTGTTATTAGGTCCCAGAGCCCACCTATGTGGCCCTGTGCCCTGTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTAGGTCCCAGAGCCCACCTATGTGGCCCTGTGCCCTGTGGCCC  100

seq1  TCTCCAGAAGCAGTTCCTGGCCTGGCAGACTACAAAAAGCATCTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAGCAGTTCCTGGCCTGGCAGACTACAAAAAGCATCTCTTCTG  150

seq1  TTAGCTGAGATGGAATCTTTTGGAACACATCCATCATGGAGGTGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAGATGGAATCTTTTGGAACACATCCATCATGGAGGTGGCATTC  200

seq1  CCATCATAAGGTTCATCCATGCTCAGTGAGATTTTGCAAGAGCTTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAAGGTTCATCCATGCTCAGTGAGATTTTGCAAGAGCTTCAAGG  250

seq1  TGGAGAAGCAGCAGGTCTCACTCTAGGGCAGGTCCTCTATGAAGCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGCAGCAGGTCTCACTCTAGGGCAGGTCCTCTATGAAGCACTCA  300

seq1  TAGTTCCTGTAAAAACCCCAGATCCCTATTTACTAAGTCATTATTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTGTAAAAACCCCAGATCCCTATTTACTAAGTCATTATTTAAGA  350

seq1  GCAAGTCCCCTTTCCAGATCTTATTTTACACCCAAAGCCATGCTGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCCCTTTCCAGATCTTATTTTACACCCAAAGCCATGCTGGTCAC  400

seq1  TAAAGGGCCACATATGCTCCTGGGATGACTTCAGAGTGATCTCTGCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCCACATATGCTCCTGGGATGACTTCAGAGTGATCTCTGCAGCT  450

seq1  GGGTGAGACTTCCCCACATAGGCAGCCTCAGCTCTGCCCTCTACCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGACTTCCCCACATAGGCAGCCTCAGCTCTGCCCTCTACCCACCC  500

seq1  CCCGCCCCTCCCCCATATCCCTCTTTATCTGACACAGGAGGTTCTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCTCCCCCATATCCCTCTTTATCTGACACAGGAGGTTCTTCATC  550

seq1  GAATGTGTAACTGCAAAATTATGTATTTGTTAAAATTAAATGAAGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTAACTGCAAAATTATGTATTTGTTAAAATTAAATGAAGACAGG  600

seq1  GAGGGGTTCAAGGGCCCCATTCCTAACTGAGGAGCTATGAATAGTTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTCAAGGGCCCCATTCCTAACTGAGGAGCTATGAATAGTTGGTG  650

seq1  GCTTTTGAATTAGGGGAGAGTCAGTTTTCTTTAAGGGTGCCCCCCACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAATTAGGGGAGAGTCAGTTTTCTTTAAGGGTGCCCCCCACCCC  700

seq1  CACACGTATTTTGACAATACTCCAGAAGTATACGAGCAGCACAGATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTATTTTGACAATACTCCAGAAGTATACGAGCAGCACAGATTGAA  750

seq1  GCTGATGTGTTGCTAAATTAAAATTTAAAAAATCCACAAAAGTTGGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTGTTGCTAAATTAAAATTTAAAAAATCCACAAAAGTTGGGGAG  800

seq1  GGGACAGAGGGGTAA-GGGTGTATCTGGAGGGACTTAAGGAGAGGAGCT-  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  GGGACAGAGGGGTAAGGGGTGTATCTGGAGGGACTTAAGGAGAGGAGCTG  850

seq1  GGAATTGAATATAACTTTAAAACATTGCAGGAAA-TTCTT-AAGGAATT-  895
      |||||||||||||||||||||||||||||||||| ||||| |||||||| 
seq2  GGAATTGAATATAACTTTAAAACATTGCAGGAAATTTCTTAAAGGAATTT  900

seq1  -GATAGAAGT--ATTTGTTG-AAAAGAC-TTGAGAAT-ATACTCTCCATT  939
        ||||||||   ||||||| ||||||| |||||||| ||||||||||||
seq2  GAATAGAAGTTATTTTGTTGAAAAAGACTTTGAGAATAATACTCTCCATT  950

seq1  -GGGTTCTCT-AAGGACAGTTATTTTGTCA-CTTTCTTGGAAGTTG-AGC  985
       ||||||||| |||||||||  ||| |||| ||||||||||||||| |||
seq2  GGGGTTCTCTAAAGGACAGTATTTTGGTCACCTTTCTTGGAAGTTGAAGC  1000

seq1  TGTACGTTCATGATCCAATA-TTTATG--ATATACTA-TGTGCAG-CAAA  1030
      |||||||||||||| | ||| ||||||  |||||||| ||||||| ||||
seq2  TGTACGTTCATGATTCCATATTTTATGGAATATACTATTGTGCAGCCAAA  1050

seq1  AC-ATA-TTGAGAGGTA-TCTAGATTATGTG-ATTTCATG--CATGTGG-  1073
      || ||| |||||||||| ||||||||||||| ||||||||  ||||||| 
seq2  ACAATATTTGAGAGGTATTCTAGATTATGTGAATTTCATGGCCATGTGGC  1100

seq1  TTTCTTTGT-CTG-AATACAAA-AC-ACGCAGCTATGAGAACCC-  1113
      ||||||||| ||| |||||||| || |||||||||||| || || 
seq2  TTTCTTTGTACTGAAATACAAACACTACGCAGCTATGAAAAACCC  1145