BAC Information

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BAC

Clone NameB6Ng01-220G01
Chromosome18 (Build37)
Map Location 66,781,129 - 66,930,374
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220G01.bB6Ng01-220G01.g
ACCGA035950GA035951
length1,1371,051
definitionB6Ng01-220G01.b B6Ng01-220G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,929,218 - 66,930,374)(66,781,129 - 66,782,165)
sequence
gaattcaactgaggatgagggagtcaacaatgcacagatggtcaacaaaa
tggatgataaaataagtaacgtgaatttagaaaatcagcaacatggaaaa
attagcagaaataaagtgtaagggaataaaggcatatggaactgctggaa
ctaaaaatgtcagtgaacccaaataaaatatcaccaatagatttgactaa
tcataagcaaggacatctaggatagagaagaccgaataaatcctacactc
aaacatcaggaaaaaaagcaaagaacaatcatgaccacgtgccccagagg
acctatattcagtttctaaagcccacatggcagctcaagtatctataatt
ccagtcctaagggatcaaatgcctacatcttaccacaatgggcaccaggc
atgcatgtagtatatatatatatatacatacatatacatacatgtaggca
aaacacacataaaataaaattcaaaagcaaatctattatttctaaaattc
tagtgttgttgtctatggaacctatgtggttttaaaacaaaaagtataat
tagcaaaaagaaaaaaatctaaagattataagtttgtttgtttgtttttt
ttataaaccttgtcccaccttgtcaagctttgttacaaaattggctgtaa
tcaatggtcagctagtagctgagagagagaaacatagtatagaacagaga
ctagaaacaggcctgaccatgtgccatggcttacataggcttcaggtgtg
tctcccagaggctcatactctggaagcttggaaccttatgtggagtattg
agaagcgacagaacctttaagaacaggctctaatggaaggcaagtgaacc
agtggaggcactgttagtgtgaaagactaatatagtttccaccagacctt
agttagttccagggtcttagcaaaagagcaaggtggctgctgcatatctc
tggcttcctacacgtatgacagctcattcccacccatgtcccacaggatc
tctggactcagccaggagctcaccaaagtcacacaattcagtccatgatc
ttggctttcacccctctagagtagggataatacttttttttattagcatt
ccacctccgaattttaatgcagcaacgagaatgaata
gaattcaggctggcagtcggagtcagccatctccaccttcgcaccagaac
caaagactgataatggccacgttcttcttttgaagaagccgagtgagaaa
ataacttatctaaaaccaggtcctggatttaccacctcattcaccataca
tgggaggtctgactgctacatattccccgccagcagctccggggctcctt
aaggccagccagtcctcaagctctgactcttgatatcttgccactgcatt
atctgtgacactcttctcatgatgaaaaaaaaagtctgttttataaatag
ttagagaagaaaatggtattagggcagaaggagaatttgaaattgggtga
tgctgttcctgagaatggagaagactatccctgagtttcaaccgtgtatt
tgttggagagttgatgtaaactccaaggcccaggtaaacttagctctcat
taatttagaggacacaatacctgcacttctcagatgtattgagtgaattt
gcagagctatttgctcacgttgccatatgtgactacagcccatggcgcca
ttcctctgccgggtaaatttgataaagctatcctgatctcagcggtgatt
tttcaagttgccatagttttttagctgagatgatcatttgttaatctaat
gggcataattaccctaatacatttagaaaagacttaatttcttccagagt
tgttattttcttagattaccttctcctgagaaagcccacttacgaagtac
taagcagggttaagctcagcagaggaagcagttcattggaaaggtgtggc
ctttgcaggatagaaccccatttgatggcagtaactctgtgagccaaacg
tgagaataactgaaactaatgtagaaatcttctcaaaaaaaaaatgcttg
gctaggaaattaatgtctttttacagtgtgttgtgtgcgcgtgcgcatgc
cctgtgcttgagtctatatggaatgtgtgagcctttcgttctgcatgaaa
ggccaaaagaagggcaatcagaatactttggatgtggggttcatgtgctg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_66929218_66930374
seq2: B6Ng01-220G01.b_48_1184 (reverse)

seq1  TATTCATCTTCTGTTGCTGCAATAAAATATCTGAGGT-GAATGCTTAATA  49
      |||||||  || ||||||||| |||||| || ||||| |||||| |||||
seq2  TATTCATTCTC-GTTGCTGCATTAAAAT-TCGGAGGTGGAATGC-TAATA  47

seq1  AAAAAAAGGTTATTTAATCCCTACTTCTAGA-GGGTGAAAGCCCAAGATC  98
      ||||||||  ||||  |||||||| |||||| ||||||||| ||||||| 
seq2  AAAAAAAG--TATT--ATCCCTAC-TCTAGAGGGGTGAAAG-CCAAGAT-  90

seq1  CATGGACTGAATTTGTGTGACTTTTGGTGAAGGCTCCCTTGGCTGAGTCC  148
      ||||||||||| ||||||||| ||||||||  |||||  |||||||||||
seq2  CATGGACTGAA-TTGTGTGAC-TTTGGTGA--GCTCC--TGGCTGAGTCC  134

seq1  AGAGAATCCTGGTGGGAACATGGGTGGGAATGAGCTGTCATACGGTGGTA  198
      |||| ||||| ||||| |||||||||||||||||||||||||||   |||
seq2  AGAG-ATCCT-GTGGG-ACATGGGTGGGAATGAGCTGTCATACG--TGTA  179

seq1  GGAAGCCAGAGATATGCAGCAGCCACCCTTGCTCTTTTGCTAAGACCCTG  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGCCAGAGATATGCAGCAGCCA-CCTTGCTCTTTTGCTAAGACCCTG  228

seq1  GAACTAACTAAGGTCTGGTGGAAACTATATTAGTCTTTCACACTAACAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACTAAGGTCTGGTGGAAACTATATTAGTCTTTCACACTAACAGT  278

seq1  GCCTCCACTGGTTCACTTGCCTTCCATTAGAGCCTGTTCTTAAAGGTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACTGGTTCACTTGCCTTCCATTAGAGCCTGTTCTTAAAGGTTCT  328

seq1  GTCGCTTCTCAATACTCCACATAAGGTTCCAAGCTTCCAGAGTATGAGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTTCTCAATACTCCACATAAGGTTCCAAGCTTCCAGAGTATGAGCC  378

seq1  TCTGGGAGACACACCTGAAGCCTATGTAAGCCATGGCACATGGTCAGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGACACACCTGAAGCCTATGTAAGCCATGGCACATGGTCAGGCC  428

seq1  TGTTTCTAGTCTCTGTTCTATACTATGTTTCTCTCTCTCAGCTACTAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGTCTCTGTTCTATACTATGTTTCTCTCTCTCAGCTACTAGCT  478

seq1  GACCATTGATTACAGCCAATTTTGTAACAAAGCTTGACAAGGTGGGACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGATTACAGCCAATTTTGTAACAAAGCTTGACAAGGTGGGACAA  528

seq1  GGTTTATAAAAAAAACAAACAAACAAACTTATAATCTTTAGATTTTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAAAAAAACAAACAAACAAACTTATAATCTTTAGATTTTTTTC  578

seq1  TTTTTGCTAATTATACTTTTTGTTTTAAAACCACATAGGTTCCATAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTAATTATACTTTTTGTTTTAAAACCACATAGGTTCCATAGACA  628

seq1  ACAACACTAGAATTTTAGAAATAATAGATTTGCTTTTGAATTTTATTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTAGAATTTTAGAAATAATAGATTTGCTTTTGAATTTTATTTTA  678

seq1  TGTGTGTTTTGCCTACATGTATGTATATGTATGTATATATATATATATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTTGCCTACATGTATGTATATGTATGTATATATATATATATAC  728

seq1  TACATGCATGCCTGGTGCCCATTGTGGTAAGATGTAGGCATTTGATCCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATGCCTGGTGCCCATTGTGGTAAGATGTAGGCATTTGATCCCT  778

seq1  TAGGACTGGAATTATAGATACTTGAGCTGCCATGTGGGCTTTAGAAACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGGAATTATAGATACTTGAGCTGCCATGTGGGCTTTAGAAACTG  828

seq1  AATATAGGTCCTCTGGGGCACGTGGTCATGATTGTTCTTTGCTTTTTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGTCCTCTGGGGCACGTGGTCATGATTGTTCTTTGCTTTTTTTC  878

seq1  CTGATGTTTGAGTGTAGGATTTATTCGGTCTTCTCTATCCTAGATGTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTGAGTGTAGGATTTATTCGGTCTTCTCTATCCTAGATGTCCT  928

seq1  TGCTTATGATTAGTCAAATCTATTGGTGATATTTTATTTGGGTTCACTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGATTAGTCAAATCTATTGGTGATATTTTATTTGGGTTCACTGA  978

seq1  CATTTTTAGTTCCAGCAGTTCCATATGCCTTTATTCCCTTACACTTTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGTTCCAGCAGTTCCATATGCCTTTATTCCCTTACACTTTATT  1028

seq1  TCTGCTAATTTTTCCATGTTGCTGATTTTCTAAATTCACGTTACTTATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAATTTTTCCATGTTGCTGATTTTCTAAATTCACGTTACTTATTT  1078

seq1  TATCATCCATTTTGTTGACCATCTGTGCATTGTTGACTCCCTCATCCTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCATTTTGTTGACCATCTGTGCATTGTTGACTCCCTCATCCTCA  1128

seq1  GTTGAATTC  1157
      |||||||||
seq2  GTTGAATTC  1137

seq1: chr18_66781129_66782165
seq2: B6Ng01-220G01.g_65_1115

seq1  GAATTCAGGCTGGCAGTCGGAGTCAGCCATCTCCACCTTCGCACCAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTGGCAGTCGGAGTCAGCCATCTCCACCTTCGCACCAGAAC  50

seq1  CAAAGACTGATAATGGCCACGTTCTTCTTTTGAAGAAGCCGAGTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTGATAATGGCCACGTTCTTCTTTTGAAGAAGCCGAGTGAGAAA  100

seq1  ATAACTTATCTAAAACCAGGTCCTGGATTTACCACCTCATTCACCATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATCTAAAACCAGGTCCTGGATTTACCACCTCATTCACCATACA  150

seq1  TGGGAGGTCTGACTGCTACATATTCCCCGCCAGCAGCTCCGGGGCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTCTGACTGCTACATATTCCCCGCCAGCAGCTCCGGGGCTCCTT  200

seq1  AAGGCCAGCCAGTCCTCAAGCTCTGACTCTTGATATCTTGCCACTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCAGTCCTCAAGCTCTGACTCTTGATATCTTGCCACTGCATT  250

seq1  ATCTGTGACACTCTTCTCATGATGAAAAAAAAAGTCTGTTTTATAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGACACTCTTCTCATGATGAAAAAAAAAGTCTGTTTTATAAATAG  300

seq1  TTAGAGAAGAAAATGGTATTAGGGCAGAAGGAGAATTTGAAATTGGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGAAAATGGTATTAGGGCAGAAGGAGAATTTGAAATTGGGTGA  350

seq1  TGCTGTTCCTGAGAATGGAGAAGACTATCCCTGAGTTTCAACCGTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCTGAGAATGGAGAAGACTATCCCTGAGTTTCAACCGTGTATT  400

seq1  TGTTGGAGAGTTGATGTAAACTCCAAGGCCCAGGTAAACTTAGCTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGAGTTGATGTAAACTCCAAGGCCCAGGTAAACTTAGCTCTCAT  450

seq1  TAATTTAGAGGACACAATACCTGCACTTCTCAGATGTATTGAGTGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGAGGACACAATACCTGCACTTCTCAGATGTATTGAGTGAATTT  500

seq1  GCAGAGCTATTTGCTCACGTTGCCATATGTGACTACAGCCCATGGCGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTATTTGCTCACGTTGCCATATGTGACTACAGCCCATGGCGCCA  550

seq1  TTCCTCTGCCGGGTAAATTTGATAAAGCTATCCTGATCTCAGCGGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCCGGGTAAATTTGATAAAGCTATCCTGATCTCAGCGGTGATT  600

seq1  TTTCAAGTTGCCATAGTTTTTTAGCTGAGATGATCATTTGTTAATCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTGCCATAGTTTTTTAGCTGAGATGATCATTTGTTAATCTAAT  650

seq1  GGGCATAATTACCCTAATACATTTAGAAAAGACTTAATTTCTTCCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAATTACCCTAATACATTTAGAAAAGACTTAATTTCTTCCAGAGT  700

seq1  TGTTATTTTCTTAGATTACCTTCTCCTGAGAAAGCCCACTTACGAAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTCTTAGATTACCTTCTCCTGAGAAAGCCCACTTACGAAGTAC  750

seq1  TAAGCAGGGTTAAGCTCAGCAGAGGAAGCAGTTCATTGG-AAGGTGTGGC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGCAGGGTTAAGCTCAGCAGAGGAAGCAGTTCATTGGAAAGGTGTGGC  800

seq1  CTTTGCAGGATAGAA-CCCATTTGATGGCAGTAACTCTGTGAGCC-AACG  847
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CTTTGCAGGATAGAACCCCATTTGATGGCAGTAACTCTGTGAGCCAAACG  850

seq1  TGAGAATAACTGAAACT-ATGTAGAAATCTTCTC-AAAAAAAAATGCTTG  895
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TGAGAATAACTGAAACTAATGTAGAAATCTTCTCAAAAAAAAAATGCTTG  900

seq1  GCTAGGAAA-TAATGTCTTTTTACAGTGTG-TGTGTGCGCGTGCGCATG-  942
      ||||||||| |||||||||||||||||||| |||||||||||||||||| 
seq2  GCTAGGAAATTAATGTCTTTTTACAGTGTGTTGTGTGCGCGTGCGCATGC  950

seq1  CCTGTGCTTGAGTCTATAT-GAATGTGTGAGCC-TTCG-TCTGCATG-AA  988
      ||||||||||||||||||| ||||||||||||| |||| |||||||| ||
seq2  CCTGTGCTTGAGTCTATATGGAATGTGTGAGCCTTTCGTTCTGCATGAAA  1000

seq1  GGCCAAAAG-AGGGC-ATCAG-ATACTTTGGATGTGGGGTTACAGGTGCT  1035
      ||||||||| ||||| ||||| ||||||||||||||||||| || |||||
seq2  GGCCAAAAGAAGGGCAATCAGAATACTTTGGATGTGGGGTT-CATGTGCT  1049

seq1  GG  1037
      ||
seq2  GG  1051