BAC Information

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BAC

Clone NameB6Ng01-220K06
Chromosome18 (Build37)
Map Location 29,310,500 - 29,473,494
singlet/doubletdoublet
Overlap geneLOC100040930
Upstream geneEG271505, EG625997, BC051408
Downstream gene4930578E11Rik, LOC666073, Pik3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K06.bB6Ng01-220K06.g
ACCGA036147GA036148
length1,1061,062
definitionB6Ng01-220K06.b B6Ng01-220K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,472,394 - 29,473,494)(29,310,500 - 29,311,579)
sequence
gaattctcaaatgaggaacactgaatggctgagaagtaactgaaaaaatg
ttcagcatcctcaatcaccagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagatgacagc
agatgctggcgaggatgtgtagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccagtctggagagatactttattgggaatac
attattgactctggttccctaaccacttaaagcaacataatttctttccg
tgatatacaaagaattttttctctaatgatgactcagttcttgcaatctc
ttatctttttaagagtggcaatcaaagcagctgtgagtagagagttttat
ctccctgatgataatctcaatctccatctctcattctctctgatgtactt
gtgtgtttgttttcatgtatgtgcaaatatgtgtaggtacacattaagcc
atttctttagtcccaggatacatttttatgtaaacctaataaaaatctga
aagtcatcacttgtaaaatgtctatttagttctttggtcattttaattag
gttattattatttgctcttgagtgaaatgagtactgcacataatttagaa
attagaccttatcatttgtatgacatgcaatcttttgacagcagataagt
tcacttttcatttcagttactgtttgctttactgtgtagaaggtttcatg
tttcttttaactcttcttaattttgtctctgttgcttgttatttagattt
gatagcccaaagcttactgccatggccagtgtccaagagatttcccattc
gttttgttttaagagtcctctgagatttacagagcaaacctggttctcac
attctgtttttacagtgcctaattctttcagaatactaaaagattattta
atttttttgtgcatttactatgcacactactcttgtgagtcgggttatct
ttattaactgcatgtatcaagtgcagagcctcaggtgaagaagtttgaac
aacttgcccaaggttacagagtgatttacaccagctagttgctgggatgg
aaaacc

gaattctctgaaccttgcccacccccagcagctcaaagggatgttgccac
ttgtggtggtctgaatatgtttaactcataggaaatggctctattaggag
gtgtgaccttgtcggaaaatgcatgttctttaggaggaaatatggactgt
gtagacaggctttgagtcctatgcttcgggtcttccctgtgcacaagaaa
ccttcctctgagttgcctgaaagaagtctcagcttcagcaccatgtctgc
ctggacactgccatgctttctgccatgatgatagtgggttgaacctctga
aactctaagccagccttaattaaacactgccttttatatgagttgcctta
gtcatggtatctcttcatagtaatagaaactgtaagatgccactcttctt
agacaggatggacaatgcagatagctttccttgaagcatatttcacagaa
gaatttttctgtaataagaaagggaaggcaacaagacctttgttccagct
taatgggaaatttctccaatttgttaatctaggaccttgtaagctgtgac
tgcagtagaggaagcaggatttatgctgtaatatgtaacaatcagtacaa
gcccagacacttcaaatcattcacataaaactcataaaatttaaagtttt
ctaaaaaaaaaaaaaaaaaagaaagaaaggcaggcagacagacagacaga
cagaaagaaagaaagaaagaaagaagagaaaggaagaaagaaagaaagaa
gagtgagagagaaagaaagaaagaaagaagaaagacagacagacagacga
cagacagacagaaagaaagagacgagaagaaagaaaatcagaatgtcctt
gttggtcatctgtggtgcaattactaaaaagtggtgcttgcctgggatac
tggtggaaattatggcattcattgactatcttcaggttgaagcccctgca
gttttttctgctataattaaaggaccaccacccttgatttaaggttttag
tacattcttatttagcaaaactgcatgtatgacataacatctagatttta
tgatgttaacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29472394_29473494
seq2: B6Ng01-220K06.b_45_1150 (reverse)

seq1  GGTTTT-CATCCCAGC-ACT-GCT-GTGT-AATCACTCTGTAACCTTGGG  45
      |||||| ||||||||| ||| ||| |||| ||||||||||||||||||||
seq2  GGTTTTCCATCCCAGCAACTAGCTGGTGTAAATCACTCTGTAACCTTGGG  50

seq1  CAAGTGTTCCAAACTTCTCAACCTGAGGCTCTGCACCTGATACATGCAGT  95
      |||||  | |||||||||  |||||||||||||||| |||||||||||||
seq2  CAAGTTGTTCAAACTTCTTCACCTGAGGCTCTGCACTTGATACATGCAGT  100

seq1  TAATAAAGATAACCCGACTCACAAGAGTAGTGTGCATAGTAAATGCCACA  145
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TAATAAAGATAACCCGACTCACAAGAGTAGTGTGCATAGTAAATGCACAA  150

seq1  AAAAATTAAATAATCTTTTAGTATTCTGAAAGAATTAGGCACTGTAAAAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAATAATCTTTTAGTATTCTGAAAGAATTAGGCACTGTAAAAA  200

seq1  CAGAATGTGAGAACCAGGTTTGCTCTGTAAATCTCAGAGGACTCTTAAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGAGAACCAGGTTTGCTCTGTAAATCTCAGAGGACTCTTAAAA  250

seq1  CAAAACGAATGGGAAATCTCTTGGACACTGGCCATGGCAGTAAGCTTTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGAATGGGAAATCTCTTGGACACTGGCCATGGCAGTAAGCTTTGG  300

seq1  GCTATCAAATCTAAATAACAAGCAACAGAGACAAAATTAAGAAGAGTTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAATCTAAATAACAAGCAACAGAGACAAAATTAAGAAGAGTTAA  350

seq1  AAGAAACATGAAACCTTCTACACAGTAAAGCAAACAGTAACTGAAATGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATGAAACCTTCTACACAGTAAAGCAAACAGTAACTGAAATGAA  400

seq1  AAGTGAACTTATCTGCTGTCAAAAGATTGCATGTCATACAAATGATAAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACTTATCTGCTGTCAAAAGATTGCATGTCATACAAATGATAAGG  450

seq1  TCTAATTTCTAAATTATGTGCAGTACTCATTTCACTCAAGAGCAAATAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTAAATTATGTGCAGTACTCATTTCACTCAAGAGCAAATAAT  500

seq1  AATAACCTAATTAAAATGACCAAAGAACTAAATAGACATTTTACAAGTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTAATTAAAATGACCAAAGAACTAAATAGACATTTTACAAGTGA  550

seq1  TGACTTTCAGATTTTTATTAGGTTTACATAAAAATGTATCCTGGGACTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCAGATTTTTATTAGGTTTACATAAAAATGTATCCTGGGACTAA  600

seq1  AGAAATGGCTTAATGTGTACCTACACATATTTGCACATACATGAAAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGCTTAATGTGTACCTACACATATTTGCACATACATGAAAACAA  650

seq1  ACACACAAGTACATCAGAGAGAATGAGAGATGGAGATTGAGATTATCATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGTACATCAGAGAGAATGAGAGATGGAGATTGAGATTATCATC  700

seq1  AGGGAGATAAAACTCTCTACTCACAGCTGCTTTGATTGCCACTCTTAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATAAAACTCTCTACTCACAGCTGCTTTGATTGCCACTCTTAAAA  750

seq1  AGATAAGAGATTGCAAGAACTGAGTCATCATTAGAGAAAAAATTCTTTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAGATTGCAAGAACTGAGTCATCATTAGAGAAAAAATTCTTTGT  800

seq1  ATATCACGGAAAGAAATTATGTTGCTTTAAGTGGTTAGGGAACCAGAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACGGAAAGAAATTATGTTGCTTTAAGTGGTTAGGGAACCAGAGTC  850

seq1  AATAATGTATTCCCAATAAAGTATCTCTCCAGACTGGTTGTACAAGCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTATTCCCAATAAAGTATCTCTCCAGACTGGTTGTACAAGCTTG  900

seq1  CAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTACACATCCTCGCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTACACATCCTCGCCA  950

seq1  GCATCTGCTGTCATCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGTCATCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGA  1000

seq1  GGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGGTGATTGAGGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGGTGATTGAGGAT  1050

seq1  GCTGAACATTTTTTCAGTTACTTCTCAGCCATTCAGTGTTCCTCATTTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATTTTTTCAGTTACTTCTCAGCCATTCAGTGTTCCTCATTTGA  1100

seq1  GAATTC  1101
      ||||||
seq2  GAATTC  1106


seq1: chr18_29310500_29311579
seq2: B6Ng01-220K06.g_68_1129

seq1  GAATTCTCTGAACCTTGCCCACCCCCAGCAGCTCAAAGGGATGTTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACCTTGCCCACCCCCAGCAGCTCAAAGGGATGTTGCCAC  50

seq1  TTGTGGTGGTCTGAATATGTTTAACTCATAGGAAATGGCTCTATTAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGGTCTGAATATGTTTAACTCATAGGAAATGGCTCTATTAGGAG  100

seq1  GTGTGACCTTGTCGGAAAATGCATGTTCTTTAGGAGGAAATATGGACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCTTGTCGGAAAATGCATGTTCTTTAGGAGGAAATATGGACTGT  150

seq1  GTAGACAGGCTTTGAGTCCTATGCTTCGGGTCTTCCCTGTGCACAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGCTTTGAGTCCTATGCTTCGGGTCTTCCCTGTGCACAAGAAA  200

seq1  CCTTCCTCTGAGTTGCCTGAAAGAAGTCTCAGCTTCAGCACCATGTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTGAGTTGCCTGAAAGAAGTCTCAGCTTCAGCACCATGTCTGC  250

seq1  CTGGACACTGCCATGCTTTCTGCCATGATGATAGTGGGTTGAACCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTGCCATGCTTTCTGCCATGATGATAGTGGGTTGAACCTCTGA  300

seq1  AACTCTAAGCCAGCCTTAATTAAACACTGCCTTTTATATGAGTTGCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAGCCAGCCTTAATTAAACACTGCCTTTTATATGAGTTGCCTTA  350

seq1  GTCATGGTATCTCTTCATAGTAATAGAAACTGTAAGATGCCACTCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTATCTCTTCATAGTAATAGAAACTGTAAGATGCCACTCTTCTT  400

seq1  AGACAGGATGGACAATGCAGATAGCTTTCCTTGAAGCATATTTCACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATGGACAATGCAGATAGCTTTCCTTGAAGCATATTTCACAGAA  450

seq1  GAATTTTTCTGTAATAAGAAAGGGAAGGCAACAAGACCTTTGTTCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCTGTAATAAGAAAGGGAAGGCAACAAGACCTTTGTTCCAGCT  500

seq1  TAATGGGAAATTTCTCCAATTTGTTAATCTAGGACCTTGTAAGCTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAAATTTCTCCAATTTGTTAATCTAGGACCTTGTAAGCTGTGAC  550

seq1  TGCAGTAGAGGAAGCAGGATTTATGCTGTAATATGTAACAATCAGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGAGGAAGCAGGATTTATGCTGTAATATGTAACAATCAGTACAA  600

seq1  GCCCAGACACTTCAAATCATTCACATAAAACTCATAAAATTTAAAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACACTTCAAATCATTCACATAAAACTCATAAAATTTAAAGTTTT  650

seq1  CTAAAAAAAAAAAAAAAAAAGAAAGAAAGGCAGGCAGACAGACAGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAAAAAAAAAAGAAAGAAAGGCAGGCAGACAGACAGACAGA  700

seq1  CAGAAAGAAAGAAAGAAAGAAAGAAGAGAAAGGAAGAAAGAAAGAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAGAAAGAAAGAAAGAAGAGAAAGGAAGAAAGAAAGAAAGAA  750

seq1  GAGTGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGACAGACA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  GAGTGAGAGAGAAAGAAAGAAAGAAAG-AAGAAAGACAGACAGACAGAC-  798

seq1  GACAGACAGACAGAAAGAAAGAAGACGAAGAAAGAAAGAAAAATCAGAAT  850
      ||||||||||||||||||||| ||||||   ||||||| |||||||||||
seq2  GACAGACAGACAGAAAGAAAG-AGACGA--GAAGAAAG-AAAATCAGAAT  844

seq1  GTCCTTGTTGGTCATCTGTGGTGCAATTACTAAAAAGTGGTGCTTGCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCCTTGTTGGTCATCTGTGGTGCAATTACTAAAAAGTGGTGCTTGCCTG  894

seq1  GGATACTGGTGGAAATTATTGCATTCATTTGACTATCTTCAGGTTGTAGC  950
      ||||||||||||||||||| ||||||| |||||||||||||||||| |||
seq2  GGATACTGGTGGAAATTATGGCATTCA-TTGACTATCTTCAGGTTGAAGC  943

seq1  CCCTGCAGTTTTTTCTGCTATAATTTAAAGGAACACCACCCTTGATTTAA  1000
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCCTGCAGTTTTTTCTGCTATAA-TTAAAGGACCACCACCCTTGATTTAA  992

seq1  AGTTTTAGTACAATTCTATATTAGCAAAAACTGCATGGTATGACATAACA  1050
       |||||||||| |||||   ||||| |||||||||| |||||||||||||
seq2  GGTTTTAGTAC-ATTCTTATTTAGC-AAAACTGCAT-GTATGACATAACA  1039

seq1  TTCTTAGAATTTTTATGTATTGTTTAACGA  1080
      |   ||||  ||||||| ||   |||||||
seq2  T--CTAGA--TTTTATG-AT--GTTAACGA  1062


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