BAC Information

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BAC

Clone NameB6Ng01-220M06
Chromosome18 (Build37)
Map Location 21,010,819 - 21,161,651
singlet/doubletdoublet
Overlap geneD030074E01Rik, Rnf125, Rnf138
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6
Downstream geneMep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M06.bB6Ng01-220M06.g
ACCGA036242GA036243
length1,0771,117
definitionB6Ng01-220M06.b B6Ng01-220M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,010,819 - 21,011,898)(21,160,538 - 21,161,651)
sequence
gaattcaaaagaaagaaggaaaacaatataattctattttaattaaaaac
atattttttaaaaagaaaaagaaaagctacaaaacaatgtttactgaaat
attaaaattctcttttaaaaactgtgtaagggtcatggagtacagatcta
taaccaagaaactttctacaactttttaaatgacaggtagttacatactt
tgcaataaagccattttattatattctcaggccagtagtaagcatgtttt
ttccctgaaaatagtaactggaaaaaaagtttaaatgtttattcctagag
agaagtatttaccttataaacataaagatattctctgaggaaggctcctt
gctgagcagcagactgtttgctttcattgattaaaatgtgtctaaaagca
gaaacagcattgtccagctgcctcagagtataggactggcgcccaatggt
gaagttgatgtgatcctctgccagagaccagccctttcctttgtaaactt
gcatggcttgacaatagcagcgcaaagcatgctttttctgtgagaaaata
aatgaaacgtgttatagtttaaatatgccttgaactggaagaaaataagc
acaaacacatgcagagacatacacaaatataaacaagaaaatggctcatc
cactaaaagagaatgtgataaagaaaatgaagctaataactaggatgatt
tcaccatcacacaactctatgtagaaccacaggttaggtctcctcggtca
tctacaatatgagtgtgcatgtgtttgtctgttctgacacctgcccctta
tttttctgagatcagcttctaagaaaaatattcattgctcaatttggctt
tatttatttcaaattctttctgtgaacaggtgaggtgtaaaagttgattg
tcaataccaatctgactggatttagactcactatggaaacacatctctga
gagtgtcatgagagagtccagaaaattttaactgagggggaagactcatc
ctgaatataggagtacaaacctataggatgtgggctactatactaaagag
agacaagaggggccactgagatactca
gaattcttttcagctatttgaaaacacagaactttttcaggccccacctg
ccaaaaattcatttctaacttcgggatggagcctaggaactggttatctt
tgctataaagagtccctctggggagcctatcccctattcgttcaatccca
gaggcaggtggattactgtgagttgaagccagtcagagctacatgagacc
ttgtcacacacattaaagaaaaagttcctcgagggctctgctcatcactc
gggcttgtcagatgcttagtgtacgttctcaagggctggctccaactccc
actgacactggttgtcctgaaaatgactgaaattctttctatgccaacta
agacctacctcaagtcaccttgcccagcccagccagcgcctttgtgctcc
atccacctcatccctggaggaaacacctcctctaacagaacggtatcttg
cctccattcttgtcatcacccagcaataataaacataaggagagcacaaa
gggagctatctcgagccccggaaatcctgccggttcggggtgggagaagg
aagctagctcatcttgggccgttttatcactgaattgttaaattagctca
aggatggggctgagcgggcgtgcaaggggggcggggacgctgctgctgac
accgacagggctaggggctacaaagccaaggaaagccaagaaaagcgcgg
cacccccggcaggtagcccggcgggcccgcacacctctgcagggcccagg
ccgagcacccaacgcccgggtctccacaaaggattgctaggaaacaaaaa
aggctccacgttctctgtgattcctctcgggcctggcgaggacgccgagg
gacgcagggcccgagcaccgcccccgggtgcaggaagctggcgacaggac
gagaccagggggtgcggggcacgggttcggagggccgggccgggccgggg
cgccgccacgagggaaggggcgttcactcacacgtgctgacaggccgcgg
tccgcaccggcgtcttgagcaccttctgacagaacagggcagtaaaaatc
atcttccgtgtaggacttgaccgccgaaaggtctcggacatgccaagggg
tggggccgggatgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21010819_21011898
seq2: B6Ng01-220M06.b_43_1119

seq1  GAATTCAAAAGAAAGAAGGAAAACAATATAATTCTATTTTAATTAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAAAGAAGGAAAACAATATAATTCTATTTTAATTAAAAAC  50

seq1  ATATTTTTTAAAAAGAAAAAGAAAAGCTACAAAACAATGTTTACTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTAAAAAGAAAAAGAAAAGCTACAAAACAATGTTTACTGAAAT  100

seq1  ATTAAAATTCTCTTTTAAAAACTGTGTAAGGGTCATGGAGTACAGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTCTCTTTTAAAAACTGTGTAAGGGTCATGGAGTACAGATCTA  150

seq1  TAACCAAGAAACTTTCTACAACTTTTTAAATGACAGGTAGTTACATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGAAACTTTCTACAACTTTTTAAATGACAGGTAGTTACATACTT  200

seq1  TGCAATAAAGCCATTTTATTATATTCTCAGGCCAGTAGTAAGCATGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAAAGCCATTTTATTATATTCTCAGGCCAGTAGTAAGCATGTTTT  250

seq1  TTCCCTGAAAATAGTAACTGGAAAAAAAGTTTAAATGTTTATTCCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAAAATAGTAACTGGAAAAAAAGTTTAAATGTTTATTCCTAGAG  300

seq1  AGAAGTATTTACCTTATAAACATAAAGATATTCTCTGAGGAAGGCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTTACCTTATAAACATAAAGATATTCTCTGAGGAAGGCTCCTT  350

seq1  GCTGAGCAGCAGACTGTTTGCTTTCATTGATTAAAATGTGTCTAAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAGCAGACTGTTTGCTTTCATTGATTAAAATGTGTCTAAAAGCA  400

seq1  GAAACAGCATTGTCCAGCTGCCTCAGAGTATAGGACTGGCGCCCAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCATTGTCCAGCTGCCTCAGAGTATAGGACTGGCGCCCAATGGT  450

seq1  GAAGTTGATGTGATCCTCTGCCAGAGACCAGCCCTTTCCTTTGTAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGATGTGATCCTCTGCCAGAGACCAGCCCTTTCCTTTGTAAACTT  500

seq1  GCATGGCTTGACAATAGCAGCGCAAAGCATGCTTTTTCTGTGAGAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTTGACAATAGCAGCGCAAAGCATGCTTTTTCTGTGAGAAAATA  550

seq1  AATGAAACGTGTTATAGTTTAAATATGCCTTGAACTGGAAGAAAATAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACGTGTTATAGTTTAAATATGCCTTGAACTGGAAGAAAATAAGC  600

seq1  ACAAACACATGCAGAGACATACACAAATATAAACAAGAAAATGGCTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATGCAGAGACATACACAAATATAAACAAGAAAATGGCTCATC  650

seq1  CACTAAAAGAGAATGTGATAAAGAAAATGAAGCTAATAACTAGGATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAGAGAATGTGATAAAGAAAATGAAGCTAATAACTAGGATGATT  700

seq1  TCACCATCACACAACTCTATGTAGAACCACAGGTTAGGTCTCCTCGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCACACAACTCTATGTAGAACCACAGGTTAGGTCTCCTCGGTCA  750

seq1  TCTACAATATGAGTGTGCATGTGTTTGTCTGTTCTGACACCTGCCCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATATGAGTGTGCATGTGTTTGTCTGTTCTGACACCTGCCCCTTA  800

seq1  TTTTTCTGAGATCAGCTTCTAAGAAAAATATTCATTGCTCAATTTGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGATCAGCTTCTAAGAAAAATATTCATTGCTCAATTTGGCTT  850

seq1  TATTTATTTCAAATTCTTTCTGTGAACAGGTGAGGTGTAAAAGTTGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTCAAATTCTTTCTGTGAACAGGTGAGGTGTAAAAGTTGATTG  900

seq1  TCAATACCAATCTGACTGGATTTAGACTCACTATGGAAACACATCTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCAATCTGACTGGATTTAGACTCACTATGGAAACACATCTCTGA  950

seq1  GAGTGTCATGAGAGAGTCCAGAAAAATTTTAACTGAGGGGGGAAGACTCA  1000
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GAGTGTCATGAGAGAGTCCAG-AAAATTTTAACTGA-GGGGGAAGACTCA  998

seq1  TCCTGAATATAGGAGTACAAACCTATAGGATGTGGGCTACTATACTAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATATAGGAGTACAAACCTATAGGATGTGGGCTACTATACTAAAG  1048

seq1  AGAGACAAGAGGGGCCACTGAGATAACTCA  1080
      |||||||||||||||||||||||| |||||
seq2  AGAGACAAGAGGGGCCACTGAGAT-ACTCA  1077

seq1: chr18_21160538_21161651
seq2: B6Ng01-220M06.g_69_1185 (reverse)

seq1  GCCTC-TCCCG--CCCACCCCTCGCCATGTCCGAGGAACTTTCGGCGGCC  47
      ||||| |||||  ||||||||| | ||||||||| || |||||||||| |
seq2  GCCTCATCCCGGCCCCACCCCTTGGCATGTCCGA-GACCTTTCGGCGGTC  49

seq1  ACGTCCTACACGGAAGATGATTTCTACTGCCCTG-TCTGTCAGGAGGTGC  96
      | ||||||||||||||||||||| |||||||||| |||||||| ||||||
seq2  AAGTCCTACACGGAAGATGATTTTTACTGCCCTGTTCTGTCAGAAGGTGC  99

seq1  TCAAGACGCCGGTGCGGACCGCGGCCTGTCAGCACGTGTGAGTGGACGCC  146
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAAGACGCCGGTGCGGACCGCGGCCTGTCAGCACGTGTGAGTGAACGCC  149

seq1  CCTTCCCTCGT-GCGGCGCCCCGGCCCGGCCCGGCCCCTCCGAACCCGTG  195
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  CCTTCCCTCGTGGCGGCGCCCCGGCCCGGCCCGG-CCCTCCGAACCCGTG  198

seq1  CCCCGCACCCCCTGGTCTCGTCCTGGTCGCCAGCTTCCTGCACCCGGGGG  245
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCCGCACCCCCTGGTCTCGTCCT-GTCGCCAGCTTCCTGCACCCGGGGG  247

seq1  CGGTGCTCGGGCCCTGCGTCCCTCGGCGTCCTCGCCAGGCCCGAGAGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTCGGGCCCTGCGTCCCTCGGCGTCCTCGCCAGGCCCGAGAGGAA  297

seq1  TCACAGAGAACGTGGAGCCTTTTTTGTTTCCTAGCAATCC-TTGTGGAGA  344
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCACAGAGAACGTGGAGCCTTTTTTGTTTCCTAGCAATCCTTTGTGGAGA  347

seq1  CCCGGGCGTTGGGTGCTCGGCCTGGGCCCTGCAGAGGTGTGCGGGCCCGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCGTTGGGTGCTCGGCCTGGGCCCTGCAGAGGTGTGCGGGCCCGC  397

seq1  CGGGCTACCTGCCGGGGGTGCCGCGCTTTTCTTGGCTTTCCTTGGCTTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTACCTGCCGGGGGTGCCGCGCTTTTCTTGGCTTTCCTTGGCTTTG  447

seq1  TAGCCCCTAGCCCTGTCGGTGTCAGCAGCAGCGTCCCCGCCCCCCTTGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTAGCCCTGTCGGTGTCAGCAGCAGCGTCCCCGCCCCCCTTGCA  497

seq1  CGCCCGCTCAGCCCCATCCTTGAGCTAATTTAACAATTCAGTGATAAAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCTCAGCCCCATCCTTGAGCTAATTTAACAATTCAGTGATAAAAC  547

seq1  GGCCCAAGATGAGCTAGCTTCCTTCTCCCACCCCGAACCGGCAGGATTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGATGAGCTAGCTTCCTTCTCCCACCCCGAACCGGCAGGATTTC  597

seq1  CGGGGCTCGAGATAGCTCCCTTTGTGCTCTCCTTATGTTTATTATTGCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTCGAGATAGCTCCCTTTGTGCTCTCCTTATGTTTATTATTGCTG  647

seq1  GGTGATGACAAGAATGGAGGCAAGATACCGTTCTGTTAGAGGAGGTGTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGACAAGAATGGAGGCAAGATACCGTTCTGTTAGAGGAGGTGTTT  697

seq1  CCTCCAGGGATGAGGTGGATGGAGCACAAAGGCGCTGGCTGGGCTGGGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGATGAGGTGGATGGAGCACAAAGGCGCTGGCTGGGCTGGGCA  747

seq1  AGGTGACTTGAGGTAGGTCTTAGTTGGCATAGAAAGAATTTCAGTCATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTTGAGGTAGGTCTTAGTTGGCATAGAAAGAATTTCAGTCATTT  797

seq1  TCAGGACAACCAGTGTCAGTGGGAGTTGGAGCCAGCCCTTGAGAACGTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACAACCAGTGTCAGTGGGAGTTGGAGCCAGCCCTTGAGAACGTAC  847

seq1  ACTAAGCATCTGACAAGCCCGAGTGATGAGCAGAGCCCTCGAGGAACTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCATCTGACAAGCCCGAGTGATGAGCAGAGCCCTCGAGGAACTTT  897

seq1  TTCTTTAATGTGTGTGACAAGGTCTCATGTAGCTCTGACTGGCTTCAACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTGTGTGACAAGGTCTCATGTAGCTCTGACTGGCTTCAACT  947

seq1  CACAGTAATCCACCTGCCTCTGGGATTGAACGAATAGGGGATAGGCTCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATCCACCTGCCTCTGGGATTGAACGAATAGGGGATAGGCTCCC  997

seq1  CAGAGGGACTCTTTATAGCAAAGATAACCAGTTCCTAGGCTCCATCCCGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACTCTTTATAGCAAAGATAACCAGTTCCTAGGCTCCATCCCGA  1047

seq1  AGTTAGAAATGAATTTTTGGCAGGTGGGGCCTGAAAAAGTTCTGTGTTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAATGAATTTTTGGCAGGTGGGGCCTGAAAAAGTTCTGTGTTTT  1097

seq1  CAAATAGCTGAAAAGAATTC  1114
      ||||||||||||||||||||
seq2  CAAATAGCTGAAAAGAATTC  1117