BAC Information

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BAC

Clone NameB6Ng01-220M22
Chromosome18 (Build37)
Map Location 49,683,352 - 49,837,573
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M22.bB6Ng01-220M22.g
ACCGA036274GA036275
length8001,157
definitionB6Ng01-220M22.b B6Ng01-220M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,683,352 - 49,684,152)(49,836,408 - 49,837,573)
sequence
gaattccactcaccagtgatcctaagatcctgggcatgctagggcacctg
gggtgtagcagatctaatactcttactacaccctcttctgccatgttccc
tgaaccttcagtgatatagctatcctatttaggtcctagggctaagcata
tcactttctagaggccaaacctctgccacagttgtgttttagcctatatg
ccaagctcacattgatgatgtgtagttttttttacaaatgccaaggtaga
aagtacattaaaatggtaagactcggagaaagctttaccatgcaattttt
tatggatgtttataaggttcttttcagagactacagtggcttatataaat
agctaagtgtttgtgatgagaaatgcaaaccctgtcattgtcactgaaat
aatctatgtgatttaattccatgctttgctccaaggaaagaggaacagag
aaaatgagatcattaaagagaatagaatgtagactgccacatcaaataag
aagaagtgagaagcctgtgttttcatcccagtggaccaagaggaaaggag
gaaagaagcaaggaaggaaagcagttttacctttttcactaatcccatat
ttttcagtgaacaccactcttttaacttctctggtaaattccaaacctgc
tttctggatagttccatgtgaacttatcaccactgcaccatatctagcat
actatgtgctacatgctaaattaagtctctcttatccaagaatcatgtgt
tgttgttgttgttgttgttattattattattattattattattattatat

gaattctgggatagagccaagtacagggagattcaccagggagttgtgag
gacacagacacatggtatgtgagcacaggtaaccagccatgtgacagatt
gtagattaaaataaatgggctagtcagagaagagcctggctatatggcca
aggtatttgtaaatacattttgagtctgagatttacttctgggagtgtgg
ggctagaaggtagaactggacctaatatttacaaaatctgttattcttac
tctcttttattatcatcatagttgagagtttaaatggcatacaacatgct
tattttcaaataactaaaatggatctatagtgtaaagtagccaattcgta
tctttccagctgaaattatgtttctaaaagcaggttttataaatgtatgt
attataccaacttaaaattatgattttctaacacttttggttttagctag
gaaaaaaatagcataaagataaaaaaatcacatagatacttgttctgaaa
gtcacatgtgtttctataagaaggaaaagcaacttgtcgaagttgaacat
ctagtagtactctttttatacttctaagtatggaagaaatgtaaacagaa
gggtgtccctttgccagagatctgttctttctctttcattataagatcac
aacagttacaccactgctccttagaaaatcctttaattctgcctgaatct
ttataaagaaaggtccaacaacagtaatattttatacccacttgctagct
tgcattgttcatctcggtccttgtgatctagtatttggttccctaactta
ttcctttagaaaccaggtcacatccacaccctctttgcgtggggagtagg
atatcgtttctcttttctgagcccaggaaactattcactacacatgggaa
atctctgtcagatatgaaacaaagcttcattagatgttctttataaagaa
aatcaattctgtgttcttagcccgcttcaccaatagcaacagaatatagt
taacgaagtgctttatgtgacaaggacttactgcacaggggttgttctgg
ttagcttgctgatttgatagaacatgtcttgctggttgcaatattcaggt
agagtagcacggaatgggactgaccatgatcagtgagaatctcgtaggaa
cctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49683352_49684152
seq2: B6Ng01-220M22.b_42_841

seq1  GAATTCCACTCACCAGTGATCCTAAGATCCTGGGCATGCTAGGGCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCAGTGATCCTAAGATCCTGGGCATGCTAGGGCACCTG  50

seq1  GGGTGTAGCAGATCTAATACTCTTACTACACCCTCTTCTGCCATGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGCAGATCTAATACTCTTACTACACCCTCTTCTGCCATGTTCCC  100

seq1  TGAACCTTCAGTGATATAGCTATCCTATTTAGGTCCTAGGGCTAAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTCAGTGATATAGCTATCCTATTTAGGTCCTAGGGCTAAGCATA  150

seq1  TCACTTTCTAGAGGCCAAACCTCTGCCACAGTTGTGTTTTAGCCTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTAGAGGCCAAACCTCTGCCACAGTTGTGTTTTAGCCTATATG  200

seq1  CCAAGCTCACATTGATGATGTGTAGTTTTTTTTACAAATGCCAAGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCACATTGATGATGTGTAGTTTTTTTTACAAATGCCAAGGTAGA  250

seq1  AAGTACATTAAAATGGTAAGACTCGGAGAAAGCTTTACCATGCAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTAAAATGGTAAGACTCGGAGAAAGCTTTACCATGCAATTTTT  300

seq1  TATGGATGTTTATAAGGTTCTTTTCAGAGACTACAGTGGCTTATATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTTTATAAGGTTCTTTTCAGAGACTACAGTGGCTTATATAAAT  350

seq1  AGCTAAGTGTTTGTGATGAGAAATGCAAACCCTGTCATTGTCACTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGTTTGTGATGAGAAATGCAAACCCTGTCATTGTCACTGAAAT  400

seq1  AATCTATGTGATTTAATTCCATGCTTTGCTCCAAGGAAAGAGGAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTGATTTAATTCCATGCTTTGCTCCAAGGAAAGAGGAACAGAG  450

seq1  AAAATGAGATCATTAAAGAGAATAGAATGTAGACTGCCACATCAAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGATCATTAAAGAGAATAGAATGTAGACTGCCACATCAAATAAG  500

seq1  AAGAAGTGAGAAGCCTGTGTTTTCATCCCAGTGGACCAAGAGGAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAGAAGCCTGTGTTTTCATCCCAGTGGACCAAGAGGAAAGGAG  550

seq1  GAAAGAAGCAAGGAAGGAAAGCAGTTTTACCTTTTTCACTAATCCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCAAGGAAGGAAAGCAGTTTTACCTTTTTCACTAATCCCATAT  600

seq1  TTTTCAGTGAACACCACTCTTTTAACTTCTCTGGTAAATTCCAAAACCTG  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCAGTGAACACCACTCTTTTAACTTCTCTGGTAAATTCC-AAACCTG  649

seq1  CTTTCTGGATAGTTCCATGTGAACTTATCACCACTGCACCATATCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGATAGTTCCATGTGAACTTATCACCACTGCACCATATCTAGCA  699

seq1  TACTATGTGCTACATGCTAAATTAAGTCTCTCTTATCCAAGAATCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTGCTACATGCTAAATTAAGTCTCTCTTATCCAAGAATCATGTG  749

seq1  TTGTTGTTGTTGTTGTTGTTATTATTATTATTATTATTATTATTATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTATTATTATTATTATTATTATTATTATTATA  799

seq1  T  801
      |
seq2  T  800

seq1: chr18_49836408_49837573
seq2: B6Ng01-220M22.g_66_1222 (reverse)

seq1  TTTTA-GTTCCTACAAGATTTCCTCACTGGAATCATTGGTCAGTCCAATC  49
      ||||| |||||||| |||||  |||||||  |||| |||||||||| || 
seq2  TTTTAGGTTCCTACGAGATT--CTCACTG--ATCA-TGGTCAGTCCCATT  45

seq1  CCTTGCTACTCTTACCTGAATTATGCACCAAGCAAGACATGTTCCTATAC  99
      || |||||||| |||||||||  |||| | ||||||||||||| |||| |
seq2  CCGTGCTACTC-TACCTGAATATTGCAACCAGCAAGACATGTT-CTAT-C  92

seq1  AAATCAGCAAGCTAACCAGAACAACCCCTGTGCAGTAAGTCCTTGTCAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATCAGCAAGCTAACCAGAACAACCCCTGTGCAGTAAGTCCTTGTC-AC  141

seq1  ATAAAAGCACTTCGTAAACTATATTCTGTTGCTATTTGGTGAAGCGGGCT  199
      || |||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AT-AAAGCACTTCGTTAACTATATTCTGTTGCTA-TTGGTGAAGCGGGCT  189

seq1  AAGAACACAGAATTGATTTTCTTTATAAGGAACATCTAATGAAGCTTTGT  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGAACACAGAATTGATTTTCTTTATAAAGAACATCTAATGAAGCTTTGT  239

seq1  TTCATATCTGACAGAGATTTCCCATGTGTAGTGAATAGTTTCCTGGGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTGACAGAGATTTCCCATGTGTAGTGAATAGTTTCCTGGGCTC  289

seq1  AG-AAAGAGAAACGATATCCTACTCCCCACGCAAAGAGGGTGTGGATGTG  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAACGATATCCTACTCCCCACGCAAAGAGGGTGTGGATGTG  339

seq1  ACCTGGTTTCTAAAGGAATAAGTTAGGGAACCAAATACTAGATCACAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTCTAAAGGAATAAGTTAGGGAACCAAATACTAGATCACAAGG  389

seq1  ACCGAGATGAACAATGCAAGCTAGCAAGTGGGTATAAAATATTACTGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGATGAACAATGCAAGCTAGCAAGTGGGTATAAAATATTACTGTTG  439

seq1  TTGGACCTTTCTTTATAAAGATTCAGGCAGAATTAAAGGATTTTCTAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCTTTCTTTATAAAGATTCAGGCAGAATTAAAGGATTTTCTAAGG  489

seq1  AGCAGTGGTGTAACTGTTGTGATCTTATAATGAAAGAGAAAGAACAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGTGTAACTGTTGTGATCTTATAATGAAAGAGAAAGAACAGATC  539

seq1  TCTGGCAAAGGGACACCCTTCTGTTTACATTTCTTCCATACTTAGAAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAAGGGACACCCTTCTGTTTACATTTCTTCCATACTTAGAAGTA  589

seq1  TAAAAAGAGTACTACTAGATGTTCAACTTCGACAAGTTGCTTTTCCTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGTACTACTAGATGTTCAACTTCGACAAGTTGCTTTTCCTTCT  639

seq1  TATAGAAACACATGTGACTTTCAGAACAAGTATCTATGTGATTTTTTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACACATGTGACTTTCAGAACAAGTATCTATGTGATTTTTTTAT  689

seq1  CTTTATGCTATTTTTTTCCTAGCTAAAACCAAAAGTGTTAGAAAATCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCTATTTTTTTCCTAGCTAAAACCAAAAGTGTTAGAAAATCATA  739

seq1  ATTTTAAGTTGGTATAATACATACATTTATAAAACCTGCTTTTAGAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTGGTATAATACATACATTTATAAAACCTGCTTTTAGAAACA  789

seq1  TAATTTCAGCTGGAAAGATACGAATTGGCTACTTTACACTATAGATCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGCTGGAAAGATACGAATTGGCTACTTTACACTATAGATCCAT  839

seq1  TTTAGTTATTTGAAAATAAGCATGTTGTATGCCATTTAAACTCTCAACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATTTGAAAATAAGCATGTTGTATGCCATTTAAACTCTCAACTA  889

seq1  TGATGATAATAAAAGAGAGTAAGAATAACAGATTTTGTAAATATTAGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAATAAAAGAGAGTAAGAATAACAGATTTTGTAAATATTAGGTC  939

seq1  CAGTTCTACCTTCTAGCCCCACACTCCCAGAAGTAAATCTCAGACTCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTACCTTCTAGCCCCACACTCCCAGAAGTAAATCTCAGACTCAAA  989

seq1  ATGTATTTACAAATACCTTGGCCATATAGCCAGGCTCTTCTCTGACTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACAAATACCTTGGCCATATAGCCAGGCTCTTCTCTGACTAGC  1039

seq1  CCATTTATTTTAATCTACAATCTGTCACATGGCTGGTTACCTGTGCTCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTTTAATCTACAATCTGTCACATGGCTGGTTACCTGTGCTCAC  1089

seq1  ATACCATGTGTCTGTGTCCTCACAACTCCCTGGTGAATCTCCCTGTACTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTGTCTGTGTCCTCACAACTCCCTGGTGAATCTCCCTGTACTT  1139

seq1  GGCTCTATCCCAGAATTC  1166
      ||||||||||||||||||
seq2  GGCTCTATCCCAGAATTC  1157