BAC Information

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BAC

Clone NameB6Ng01-222P22
Chromosome18 (Build37)
Map Location 15,945,352 - 15,946,526
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012
Downstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222P22.bB6Ng01-222P22.g
ACCGA037860GA037861
length1,159894
definitionB6Ng01-222P22.b B6Ng01-222P22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttcttcagaccataaaaatgacaagattcctgaagatttac
atttttatgctatagattaatcaatctctcaggtagaaagagaaattttg
gtgcatgtgttatagactatctattcagcccgaggaaagtgtaagaaatt
aatttcccctttccaacagaaaatgatagcaaagacagcttgcctaaatc
aaagaagatgccattaaagtttcttctgtgtcacatgctttttgatagac
tccaacaatggtgtcaatagcatcataaagaaaaatctctgaatgtgtgg
aagagaattttgacattcgccaagtaactggtgatgtttttgttgctgtt
tttaaattcgagctcaatgtgctgattaattaaaaaaaaaacactcagaa
aggtggctccatcaatataagacttgctgtgcatgcgtgaggactgagtt
cagaatccatacaaagcaaacaaacagaaaaccaacagcatggatcctca
ggtttgtaacccctatactagcaaacaatgactgtgtagaatctgtgggc
tgatgggagagccagcctggctaaatccatatgctcccggttcaacagga
agattctgcttctaaacagcaagtaactgaagaagccatgggggtgacct
ctgacctccaactgcacaagcacacacatccatggacacctgcacgtgga
tcagcacttccatatacactaacaagtattcaaacatacaagaaggaatg
tttctttagtgtcacagaaataattttatctcataaaactgttgctggat
ttccacatggggctaccattgtttttaaagaaacactgctgaaattttcc
atatcaatccactttaaaatatactcatgttcacccaacaacctaatcaa
gtatttatgcacagtagcaattaaattgctttaattgttgctttggacag
ttcttttatcacaaaaaaataccagtgacaattgcatagtgcactgagtg
tttacatactgatgacatttcagagtgtgactctcgtgttctaccactaa
atagttaggactactgggaaagggcaagaaaatgcatattaactaatatt
tagtaggttactttctgaagactgttaaagcatgccaatgcctataactt
aaaatgcat

gaattccccttaaagagatagcccctctggctatctatcccttgcttcag
ggaagatgagtggggatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcgggtccg
cactttcgccatggtagcgtaggcttttgctgcagtggaggtgggacaat
ctcctcagattcggtttgccgctctaaaagaaattatgctgcgttatgcc
gtggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatc
ctgtggaaggcatgtctgattgcatgaaggttcagtgtcctagttccctt
cccccaggaaaaacgacacgggagctggccaagacctctctgggtgatga
gcctaagggatggttttgtgtagggcccctatgcttgcacactggggatc
agacctctaccttcacccatgaggcttgcttgcagcaattaagatctggc
cataagttaattaacatcctggccttttgatgcacctcctgcaagcaaaa
cacaatctccccaggagtggcttggcatgattgagaggtagtcagtgata
agactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctg
tttgtcacccaaggacgggtaaggggcatggctgcgggggggctatctac
agacattctctctgccaaaaaagaaaaaagggggagatgtgaggagcggg
tgtgggtggcaagtctcaaaaggcgccagggatctgctgctaagtcatta
ttgaacttgcacctgactttcctcatataggaaacaaacatcttgagtgc
ttgcgcaggtgtccctagaaatcaggttgattcctatttggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15945352_15946526
seq2: B6Ng01-222P22.b_46_1204

seq1  GAATTCATCTTCTTCAGACCATAAAAATGACAAGATTCCTGAAGATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCTTCAGACCATAAAAATGACAAGATTCCTGAAGATTTAC  50

seq1  ATTTTTATGCTATAGATTAATCAATCTCTCAGGTAGAAAGAGAAATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGCTATAGATTAATCAATCTCTCAGGTAGAAAGAGAAATTTTG  100

seq1  GTGCATGTGTTATAGACTATCTATTCAGCCCGAGGAAAGTGTAAGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGTTATAGACTATCTATTCAGCCCGAGGAAAGTGTAAGAAATT  150

seq1  AATTTCCCCTTTCCAACAGAAAATGATAGCAAAGACAGCTTGCCTAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCTTTCCAACAGAAAATGATAGCAAAGACAGCTTGCCTAAATC  200

seq1  AAAGAAGATGCCATTAAAGTTTCTTCTGTGTCACATGCTTTTTGATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATGCCATTAAAGTTTCTTCTGTGTCACATGCTTTTTGATAGAC  250

seq1  TCCAACAATGGTGTCAATAGCATCATAAAGAAAAATCTCTGAATGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAATGGTGTCAATAGCATCATAAAGAAAAATCTCTGAATGTGTGG  300

seq1  AAGAGAATTTTGACATTCGCCAAGTAACTGGTGATGTTTTTGTTGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTTTGACATTCGCCAAGTAACTGGTGATGTTTTTGTTGCTGTT  350

seq1  TTTAAATTCGAGCTCAATGTGCTGATTAATTAAAAAAAAAACACTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCGAGCTCAATGTGCTGATTAATTAAAAAAAAAACACTCAGAA  400

seq1  AGGTGGCTCCATCAATATAAGACTTGCTGTGCATGCGTGAGGACTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCCATCAATATAAGACTTGCTGTGCATGCGTGAGGACTGAGTT  450

seq1  CAGAATCCATACAAAGCAAACAAACAGAAAACCAACAGCATGGATCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCATACAAAGCAAACAAACAGAAAACCAACAGCATGGATCCTCA  500

seq1  GGTTTGTAACCCCTATACTAGCAAACAATGACTGTGTAGAATCTGTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAACCCCTATACTAGCAAACAATGACTGTGTAGAATCTGTGGGC  550

seq1  TGATGGGAGAGCCAGCCTGGCTAAATCCATATGCTCCCGGTTCAACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAGAGCCAGCCTGGCTAAATCCATATGCTCCCGGTTCAACAGGA  600

seq1  AGATTCTGCTTCTAAACAGCAAGTAACTGAAGAAGCCATGGGGGTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCTTCTAAACAGCAAGTAACTGAAGAAGCCATGGGGGTGACCT  650

seq1  CTGACCTCCAACTGCACAAGCACACACATCCATGGACACCTGCACGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCCAACTGCACAAGCACACACATCCATGGACACCTGCACGTGGA  700

seq1  TCAGCACTTCCATATACACTAACAAGTATTCAAACATACAAGAAGGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTTCCATATACACTAACAAGTATTCAAACATACAAGAAGGAATG  750

seq1  TTTCTTTAGTGTCACAGAAATAATTTTATCTCATAAAACTGTTGCTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTGTCACAGAAATAATTTTATCTCATAAAACTGTTGCTGGAT  800

seq1  TTCCACAT-GGGCTACCATTGTTTTTAAAGAAACACTGCTGAAATTTTCC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGGGGCTACCATTGTTTTTAAAGAAACACTGCTGAAATTTTCC  850

seq1  ATATCAATCCAC-TTAAAATATACTCATGTTCACCCAACAACCTAATCAA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATCAATCCACTTTAAAATATACTCATGTTCACCCAACAACCTAATCAA  900

seq1  GTATTTATGCACAGTAGCAATTAAATTGCTTTAATTGTTGCTTTGGACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGCACAGTAGCAATTAAATTGCTTTAATTGTTGCTTTGGACAG  950

seq1  TTC-TTTATCACAAAAAAATACCAGTGACAATTGCATAGTGCCACTGAGT  997
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTTTTATCACAAAAAAATACCAGTGACAATTGCATAGTG-CACTGAGT  999

seq1  GTTTTACATACTGATGACATTTTCCAGAGTGTGACTCTCGTGTTCTACCA  1047
      | ||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  G-TTTACATACTGATGACATTT--CAGAGTGTGACTCTCGTGTTCTACCA  1046

seq1  ACTTAAATAAGTTAAGACTTACTTGGAAAGGGGAAGAAAAATGGAATATT  1097
         ||||| ||||| ||| |||| |||||||| |||||||   | |||||
seq2  --CTAAAT-AGTTAGGAC-TACTGGGAAAGGGCAAGAAAA--TGCATATT  1090

seq1  TACTTAAATATTTAAGTAGTTTTAATTTCTGAAGACATGTTAAAGCACAT  1147
       |||  ||||||| |||||  ||| ||||||||||| ||||||||  |||
seq2  AACT--AATATTT-AGTAG-GTTACTTTCTGAAGAC-TGTTAAAG--CAT  1133

seq1  GCCCATGCCTATTAAAATTAAAATGCAT  1175
      ||| ||||||||  || |||||||||||
seq2  GCCAATGCCTAT--AACTTAAAATGCAT  1159


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