BAC Information

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BAC

Clone NameB6Ng01-223I06
Chromosome18 (Build37)
Map Location 15,962,281 - 15,963,405
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012
Downstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223I06.bB6Ng01-223I06.g
ACCGA038239GA038240
length1,1311,098
definitionB6Ng01-223I06.b B6Ng01-223I06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatttatttttgaatgacatttaccttgacaactttgcccttt
gtgctggcctgtcagaaaagtttctaatttagatcctttataaatattcc
ttctggaataggtccatctgttgttgaaagacttgtttctgataaaaaaa
gatatgaaaagacaagaaagaatctttttaaattaaaattctctgctatt
tctcaataatataaatgccacaacaagttatgagatatatcattgcaatg
tgcttaagaaaataggattatatattttggatatcattgatgaaatatgg
ccactctgccattgaatatcctcccagatcgtgttattaaaagttcatgt
attgttttatgtatatatttgataaaattttcaattggggcttgatatta
tagtgccttggggggtaaatctccagttatacctaaatggggactagtgt
attctgagaggggaatttcccctgcactgtcaaaatgcttcaaaagtggt
tctgttcgtagaccatcctatttaaccttcatcacaccacttccacacat
tagggattccttgccatcttttactgcttttgcaaccagtaacactaatc
aaaatttagcttgccatctaatgttttatcaatttgcatatcatccagct
cttccctactaggaaccaagctctatagaactttatctcttcattctgat
gaggccaacacttaatatagttcctggtacctgattctaagtgctcaata
aatatccattagagttgaaatggcttaatttctgaggggatccaagcttc
tgaagctgcaagagcaactccatccacccttatcttctgctgacagctct
caaggtcccttgtgccctcagccaatttccctatctgccagagctcattc
ttctccttgtcctggtttctcaagagaacgggagtctggattaaagctgc
tgagatgttacccatgcattcgattattaatctttctgatagttataatg
gtagattgtactcattaataccaatgagacagtggtgctcgaagggtgac
acattgattgagtcactcaaggtagtgataaaattgtttccgaataaaat
aatgaccacactgccttcttaacaaacagct
gaattcttggtttagttctataccccattttttgattgggttgtttggtt
ttttggaggttagcttcttgagttcttcatatattttggatgttagccct
ctattggatgtgggaacagtgaaaaaattttcccaatctgtaggttgcca
atttgtcttattgactatgtcctttgctttacagaaactttccagtttta
tgaggtccaatttatcaattcttgatctcagagcatgagccattggagtt
ctgtttaggaaatttccccctgtgccaatgagttcaaggctctttcccac
tttctcttctattagattcagtgtatcttgttttatgttgaggtccttga
tccacttagacgtgagctttgtgcaaggtgacaaatatgggcctattttc
attttgctacatacagacagcctgttagaccagcaccatttattgaagat
actttctttcttccattgtatatttttggcttctttgtcaaagatctagt
gtgcataaatgtgtggtgtgatttccaggtcttcaattctattccattga
tcaaagtgtctgtctctgtaccaataccatgaaatttttatcactattgc
tctgtagtagagattgaggtcaggatggtgatttccccagatgttctttt
attgttaagaattgttgtgctatttctgggtttaaatcaaggagcaggta
aactattttaaacagcccataacttgtaagaattagaaaaagtcattaaa
cccccccccaaaaaaaaaagccctgggcaagatgatttagttgtagaatt
ctttccaggcttccatgaacctattcccataaatagaacaggagaatatc
tcctattcatttttcgaagcccaatttctcttgtatcctaaccttcaagg
accatcaaaatagaactccagacatctcgctttatgaattctttgcaaat
acacattatctctcaaccatccagagaacctcgaacatattccacagaac
tgtaggcatctctagagatgacagtgtggttcatatacgaactcttagtg
tccctttacactaaatgctctaggcaaggccgtgaagctctaatagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15962281_15963405
seq2: B6Ng01-223I06.b_45_1175

seq1  GAATTCAAATTTATTTTTGAATGACATTTACCTTGACAACTTTGCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTATTTTTGAATGACATTTACCTTGACAACTTTGCCCTTT  50

seq1  GTGCTGGCCTGTCAGAAAAGTTTCTAATTTAGATCCTTTATAAATATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCCTGTCAGAAAAGTTTCTAATTTAGATCCTTTATAAATATTCC  100

seq1  TTCTGGAATAGGTCCATCTGTTGTTGAAAGACTTGTTTCTGATAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATAGGTCCATCTGTTGTTGAAAGACTTGTTTCTGATAAAAAAA  150

seq1  GATATGAAAAGACAAGAAAGAATCTTTTTAAATTAAAATTCTCTGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAAAGACAAGAAAGAATCTTTTTAAATTAAAATTCTCTGCTATT  200

seq1  TCTCAATAATATAAATGCCACAACAAGTTATGAGATATATCATTGCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAATATAAATGCCACAACAAGTTATGAGATATATCATTGCAATG  250

seq1  TGCTTAAGAAAATAGGATTATATATTTTGGATATCATTGATGAAATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGAAAATAGGATTATATATTTTGGATATCATTGATGAAATATGG  300

seq1  CCACTCTGCCATTGAATATCCTCCCAGATCGTGTTATTAAAAGTTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGCCATTGAATATCCTCCCAGATCGTGTTATTAAAAGTTCATGT  350

seq1  ATTGTTTTATGTATATATTTGATAAAATTTTCAATTGGGGCTTGATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATGTATATATTTGATAAAATTTTCAATTGGGGCTTGATATTA  400

seq1  TAGTGCCTTGGGGGGTAAATCTCCAGTTATACCTAAATGGGGACTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTTGGGGGGTAAATCTCCAGTTATACCTAAATGGGGACTAGTGT  450

seq1  ATTCTGAGAGGGGAATTTCCCCTGCACTGTCAAAATGCTTCAAAAGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGAGGGGAATTTCCCCTGCACTGTCAAAATGCTTCAAAAGTGGT  500

seq1  TCTGTTCGTAGACCATCCTATTTAACCTTCATCACACCACTTCCACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCGTAGACCATCCTATTTAACCTTCATCACACCACTTCCACACAT  550

seq1  TAGGGATTCCTTGCCATCTTTTACTGCTTTTGCAACCAGTAACACTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTCCTTGCCATCTTTTACTGCTTTTGCAACCAGTAACACTAATC  600

seq1  AAAATTTAGCTTGCCATCTAATGTTTTATCAATTTGCATATCATCCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGCTTGCCATCTAATGTTTTATCAATTTGCATATCATCCAGCT  650

seq1  CTTCCCTACTAGGAACCAAGCTCTATAGAACTTTATCTCTTCATTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTACTAGGAACCAAGCTCTATAGAACTTTATCTCTTCATTCTGAT  700

seq1  GAGGCCAACACTTAATATAGTTCCTGGTACCTGATTCTAAGTGCTCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAACACTTAATATAGTTCCTGGTACCTGATTCTAAGTGCTCAATA  750

seq1  AATATCCATTAGAGTTGAAATGGCTTAATTTCTGAGGGGATCCAAGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCATTAGAGTTGAAATGGCTTAATTTCTGAGGGGATCCAAGCTTC  800

seq1  TGAAGCTGCAAGAGCAACTCCATCCACCCTTATCTTCTGCTGACAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGCAAGAGCAACTCCATCCACCCTTATCTTCTGCTGACAGCTCT  850

seq1  CAGGGTCCCTTGTGCCCTCAGCC-ATTTCCCTATCTGCCAGAGCTCATTC  899
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGGTCCCTTGTGCCCTCAGCCAATTTCCCTATCTGCCAGAGCTCATTC  900

seq1  TTCTCCTTGTCCTGG-TTCTCAAGAGAACGGGAGTCTGGATTAAAGCTGC  948
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGTCCTGGTTTCTCAAGAGAACGGGAGTCTGGATTAAAGCTGC  950

seq1  TGAGATGTTACCCATGCATTCGATTATTAATCTTTCTGATAGTTATATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAGATGTTACCCATGCATTCGATTATTAATCTTTCTGATAGTTATAATG  1000

seq1  GTAGATTGTACTCATT-ATACCAATGAGGACAGTGGTGCTCGAAGGGTGA  1047
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  GTAGATTGTACTCATTAATACCAATGA-GACAGTGGTGCTCGAAGGGTGA  1049

seq1  CACATTGATTGGAGGTCACTC-AGGTAGTGATAAAAT--GTTCCGAAT-A  1093
      |||||||||||   ||||||| |||||||||||||||   |||||||| |
seq2  CACATTGATTG--AGTCACTCAAGGTAGTGATAAAATTGTTTCCGAATAA  1097

seq1  AATAATGA-CACACTGCC-TCTTACAAACCAGCT  1125
      |||||||| ||||||||| |||||  || |||||
seq2  AATAATGACCACACTGCCTTCTTAACAAACAGCT  1131