BAC Information

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BAC

Clone NameB6Ng01-223J12
Chromosome18 (Build37)
Map Location 28,653,125 - 28,794,712
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665646, EG271505, EG625997
Downstream geneBC051408, LOC100040930, 4930578E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223J12.bB6Ng01-223J12.g
ACCGA038295GA038296
length1,1151,103
definitionB6Ng01-223J12.b B6Ng01-223J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,653,125 - 28,654,240)(28,793,600 - 28,794,712)
sequence
gaattctttaaggtttattttggctctttgttaaatatggctaaaatctc
aggttatgtgttgaaaagacctgggctcctatttaatttccagttatttc
tatatgactttctaggtagcatttggccctttaagccagtttattcatct
ataaagattacctattttagatcattagaattcaatgagaagaatgttca
gccagaggccttgtactagtaagagttcaattttttaaatattcctaatc
cttttcccaggcacttctattataattttttttcttagacgtttgttatt
tggtaaataatacttcacttcataatagtattaaggaagttgtattgcac
tcactctgttattcagttattgctgtttgttaattagtacataacaagca
aatctaatgttttatttttacaaatgtaaagggaataaaatatgattatt
ttggtgagattaaaattatatttctttgctgatatataattctaaacttc
tttctaatgagaaaatacattaaggggaatgggaaccttctgctctattt
atggctcagtatttggcgattcatatgtaaatgaactaataggaagctgc
tgaaatgagaggcatggtggagctgatgcagttgagtgtacatgttgggg
catactcttttctcttggaatcctcatacctttgaactctctgaggtctt
acaggaaaaaaaaaatagcaatggcagattgagtataagtgagcctattg
aggcctaaagaaatatttgtatgtctaattcatttagtgaaaactttttt
tgaagtaactatctatcagatatataatgtgagccccttgcataatttca
acttttttggtaggtacatttatgaaagcaaaattgaacataaatatatt
tcagagactgtttgtttatttcaaaactaatccaaatactataattatca
atataaactgtaatgatttaaattatatatttataatgtcttatctttca
tattgcatcttaatgtaaagagtagttcactgaaattttgacctaattga
gattatgaaatttaatagcctaaaattagttgactcataagaatattctt
caacacacaactgga

gaattccttgtatttctggccaccaaatttcctcaatattaccaccaact
gattatcttaaagatcactgcatggatggatcctttacggatgtactctg
tactctgaggtgatcagctttttacatgcatccatctctttctaactgaa
tcctaggatcctctgtcatgttccatttcatgcttactctcacctgggta
aaatatatagttctaagacttaacacacattccttccatttgtggacact
cctgagtggggcctcatgcctcctgtacttttgacccaggaaatattagg
atgacttacatccccgtctatagcacccatatcatggtctgttgccacag
tgaattatttttttgtggttacaaacatctcagtcattgtatttgtgtga
gtattcaattcagttcatgttcagtatatatcttctactctgcttcttgt
aaaaatataaatttttgcaatcaaaatcatatgtttttcacagtttggat
tctgtttccaccttctctgtcatctaacataccacgagagctttgtaaaa
agccccagtgtgactttaagccatgaaacatgagaatgatttaatgtgag
ttatagattttgtttagaatatatagtacaatgtatttatcctcagttca
gttcagctaatatttatagaccaatagtgtagcatcttatacagagtaaa
ctttcaataaacatttagacacagaatgttagcaattcatctaaacagta
catggagcccagcagaaaaggagggataaataactcttaaaacgttttct
ggtttattaaccctagttgtctgcagtttacttttaaaggagattacatc
agaatagtgcagacctcatttaagaagctgattctcaactctattgccag
tgttggcactccattgaacttgaaatcatcagagaaattagggcgtaagg
catatggtttttgaagcattatctcgcttttttcttttttaatctgcttt
accccaggtatggacttttcttagtcaacttcaaaaagaagtttccaatg
gatcccacattcagagacatgttttccaattcatggagtttgagatttaa
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28653125_28654240
seq2: B6Ng01-223J12.b_43_1157

seq1  GAATTCTTTAAGGTTTATTTTGGCTCTTTGTTAAATATGGCTAAAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGGTTTATTTTGGCTCTTTGTTAAATATGGCTAAAATCTC  50

seq1  AGGTTATGTGTTGAAAAGACCTGGGCTCCTATTTAATTTCCAGTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGTGTTGAAAAGACCTGGGCTCCTATTTAATTTCCAGTTATTTC  100

seq1  TATATGACTTTCTAGGTAGCATTTGGCCCTTTAAGCCAGTTTATTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACTTTCTAGGTAGCATTTGGCCCTTTAAGCCAGTTTATTCATCT  150

seq1  ATAAAGATTACCTATTTTAGATCATTAGAATTCAATGAGAAGAATGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTACCTATTTTAGATCATTAGAATTCAATGAGAAGAATGTTCA  200

seq1  GCCAGAGGCCTTGTACTAGTAAGAGTTCAATTTTTTAAATATTCCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGCCTTGTACTAGTAAGAGTTCAATTTTTTAAATATTCCTAATC  250

seq1  CTTTTCCCAGGCACTTCTATTATAATTTTTTTTCTTAGACGTTTGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCAGGCACTTCTATTATAATTTTTTTTCTTAGACGTTTGTTATT  300

seq1  TGGTAAATAATACTTCACTTCATAATAGTATTAAGGAAGTTGTATTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAATACTTCACTTCATAATAGTATTAAGGAAGTTGTATTGCAC  350

seq1  TCACTCTGTTATTCAGTTATTGCTGTTTGTTAATTAGTACATAACAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTTATTCAGTTATTGCTGTTTGTTAATTAGTACATAACAAGCA  400

seq1  AATCTAATGTTTTATTTTTACAAATGTAAAGGGAATAAAATATGATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATGTTTTATTTTTACAAATGTAAAGGGAATAAAATATGATTATT  450

seq1  TTGGTGAGATTAAAATTATATTTCTTTGCTGATATATAATTCTAAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGATTAAAATTATATTTCTTTGCTGATATATAATTCTAAACTTC  500

seq1  TTTCTAATGAGAAAATACATTAAGGGGAATGGGAACCTTCTGCTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGAGAAAATACATTAAGGGGAATGGGAACCTTCTGCTCTATTT  550

seq1  ATGGCTCAGTATTTGGCGATTCATATGTAAATGAACTAATAGGAAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTATTTGGCGATTCATATGTAAATGAACTAATAGGAAGCTGC  600

seq1  TGAAATGAGAGGCATGGTGGAGCTGATGCAGTTGAGTGTACATGTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGAGGCATGGTGGAGCTGATGCAGTTGAGTGTACATGTTGGGG  650

seq1  CATACTCTTTTCTCTTGGAATCCTCATACCTTTGAACTCTCTGAGGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTTTTCTCTTGGAATCCTCATACCTTTGAACTCTCTGAGGTCTT  700

seq1  ACAGGAAAAAAAAAATAGCAATGGCAGATTGAGTATAAGTGAGCCTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAAAAAAATAGCAATGGCAGATTGAGTATAAGTGAGCCTATTG  750

seq1  AGGCCTAAAGAAATATTTGTATGTCTAATTCATTTAGTGAAAACTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAAAGAAATATTTGTATGTCTAATTCATTTAGTGAAAACTTTTTT  800

seq1  TGAAGTAACTATCTATCAGATATATAATGTGAGCCCCTTGCATAATTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACTATCTATCAGATATATAATGTGAGCCCCTTGCATAATTTCA  850

seq1  ACTTTTTTGGTAGGTACATTTATGAAAGCAAAATTGAACATAAATATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTGGTAGGTACATTTATGAAAGCAAAATTGAACATAAATATATT  900

seq1  TCAGAGACTGTTTG-TTAATTCAAAACTAATCCAAATACTATAATTATCA  949
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TCAGAGACTGTTTGTTTATTTCAAAACTAATCCAAATACTATAATTATCA  950

seq1  ATATAAAACTGTTAATGATTTAATTTATATATTTATAATGTCTTATCTTT  999
      |||| |||||| ||||||||||| ||||||||||||||||||||||||||
seq2  ATAT-AAACTG-TAATGATTTAAATTATATATTTATAATGTCTTATCTTT  998

seq1  CATATTGCATCTTAATGTAAAGAGTAAGTTCCACTGAAAATTTTGACCTA  1049
      ||||||||||||||||||||||||| |||| ||||| |||||||||||| 
seq2  CATATTGCATCTTAATGTAAAGAGT-AGTT-CACTG-AAATTTTGACCT-  1044

seq1  AATTGAGATTATGAAATTT-ATAGCCTAAAA-TAG-TGACTCATAAG-AT  1095
      ||||||||||||||||||| ||||||||||| ||| ||||||||||| ||
seq2  AATTGAGATTATGAAATTTAATAGCCTAAAATTAGTTGACTCATAAGAAT  1094

seq1  ATTCTTCAACACACAACTGGA  1116
      |||||||||||||||||||||
seq2  ATTCTTCAACACACAACTGGA  1115


seq1: chr18_28793600_28794712
seq2: B6Ng01-223J12.g_66_1168 (reverse)

seq1  TTATTAATACTCAAAACACCATGAGTTTGGAAAACATGTCTCTGAATGT-  49
      |||||||  ||| |||| ||||||  ||||||||||||||||||||||| 
seq2  TTATTAAATCTC-AAACTCCATGA-ATTGGAAAACATGTCTCTGAATGTG  48

seq1  GGATTCATT-GAAACTTCTTTTTGAAGTTGAACTTAAGAAATGTCCCATC  98
      |||| |||| |||||||||||||||||||||   ||||||| || |||| 
seq2  GGATCCATTGGAAACTTCTTTTTGAAGTTGA--CTAAGAAAAGT-CCATA  95

seq1  CCTGGGGTAAAGCAGATTAAAAAAAAAAAAAAAAAAAAAACGAGAT-ATG  147
      ||||||||||||||||||        |||||| |||||| |||||| |||
seq2  CCTGGGGTAAAGCAGATT--------AAAAAAGAAAAAAGCGAGATAATG  137

seq1  CTTCAAAAACCATATGCCTTACGCCCTAATTTCTCTGATGATTTCAAGTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAACCATATGCCTTACGCCCTAATTTCTCTGATGATTTCAAGTT  187

seq1  CAATGGAGTGCCAACACTGGCAATAGAGTTGAGAATCAGCTTCTTAAATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGTGCCAACACTGGCAATAGAGTTGAGAATCAGCTTCTTAAATG  237

seq1  AGGTCTGCACTATTCTGATGTAATCTCCTTTAAAAGTAAACTGCAGACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCACTATTCTGATGTAATCTCCTTTAAAAGTAAACTGCAGACAA  287

seq1  CTAGGGTTAATAAACCAGAAAACGTTTTAAGAGTTATTTATCCCTCCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTTAATAAACCAGAAAACGTTTTAAGAGTTATTTATCCCTCCTTT  337

seq1  TCTGCTGGGCTCCATGTACTGTTTAGATGAATTGCTAACATTCTGTGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGCTCCATGTACTGTTTAGATGAATTGCTAACATTCTGTGTCT  387

seq1  AAATGTTTATTGAAAGTTTACTCTGTATAAGATGCTACACTATTGGTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATTGAAAGTTTACTCTGTATAAGATGCTACACTATTGGTCTA  437

seq1  TAAATATTAGCTGAACTGAACTGAGGATAAATACATTGTACTATATATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAGCTGAACTGAACTGAGGATAAATACATTGTACTATATATTC  487

seq1  TAAACAAAATCTATAACTCACATTAAATCATTCTCATGTTTCATGGCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATCTATAACTCACATTAAATCATTCTCATGTTTCATGGCTTA  537

seq1  AAGTCACACTGGGGCTTTTTACAAAGCTCTCGTGGTATGTTAGATGACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACTGGGGCTTTTTACAAAGCTCTCGTGGTATGTTAGATGACAG  587

seq1  AGAAGGTGGAAACAGAATCCAAACTGTGAAAAACATATGATTTTGATTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGAAACAGAATCCAAACTGTGAAAAACATATGATTTTGATTGC  637

seq1  AAAAATTTATATTTTTACAAGAAGCAGAGTAGAAGATATATACTGAACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTATATTTTTACAAGAAGCAGAGTAGAAGATATATACTGAACAT  687

seq1  GAACTGAATTGAATACTCACACAAATACAATGACTGAGATGTTTGTAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATTGAATACTCACACAAATACAATGACTGAGATGTTTGTAACC  737

seq1  ACAAAAAAATAATTCACTGTGGCAACAGACCATGATATGGGTGCTATAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAATAATTCACTGTGGCAACAGACCATGATATGGGTGCTATAGA  787

seq1  CGGGGATGTAAGTCATCCTAATATTTCCTGGGTCAAAAGTACAGGAGGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGTAAGTCATCCTAATATTTCCTGGGTCAAAAGTACAGGAGGCA  837

seq1  TGAGGCCCCACTCAGGAGTGTCCACAAATGGAAGGAATGTGTGTTAAGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCCACTCAGGAGTGTCCACAAATGGAAGGAATGTGTGTTAAGTC  887

seq1  TTAGAACTATATATTTTACCCAGGTGAGAGTAAGCATGAAATGGAACATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTATATATTTTACCCAGGTGAGAGTAAGCATGAAATGGAACATG  937

seq1  ACAGAGGATCCTAGGATTCAGTTAGAAAGAGATGGATGCATGTAAAAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGATCCTAGGATTCAGTTAGAAAGAGATGGATGCATGTAAAAAGC  987

seq1  TGATCACCTCAGAGTACAGAGTACATCCGTAAAGGATCCATCCATGCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCTCAGAGTACAGAGTACATCCGTAAAGGATCCATCCATGCAGT  1037

seq1  GATCTTTAAGATAATCAGTTGGTGGTAATATTGAGGAAATTTGGTGGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAAGATAATCAGTTGGTGGTAATATTGAGGAAATTTGGTGGCCA  1087

seq1  GAAATACAAGGAATTC  1113
      ||||||||||||||||
seq2  GAAATACAAGGAATTC  1103


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