BAC Information

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BAC

Clone NameB6Ng01-223M08
Chromosome18 (Build37)
Map Location 87,791,704 - 87,871,369
singlet/doubletdoublet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M08.bB6Ng01-223M08.g
ACCGA038419GA038420
length1,2201,103
definitionB6Ng01-223M08.b B6Ng01-223M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,791,704 - 87,792,920)(87,870,264 - 87,871,369)
sequence
gaattctctaagtggatgatcctgaccttgaactcatagagatcacaggc
atgtaccaccaccatccagaagctttctactttcttatatgtataataat
ttgataaattttataacaacttcattttattgttgcttctttctttttca
atttcatatgcttaaagttctacatagctaagatatttttctattttatt
cagttttgaaaagactgacacaaagaattgacttggtataaatacatcaa
ctgaaaggtcaattaacctgatttgaatccttatgcagtagaacaaatta
gttgactcacagcagttcctgtaggaaagtcatgacatttgtttttgtac
agcatagatgtctattgaatagcaattaaatataagttagaaaactatca
cttaagactttcaacagatcctttttcttaaataactgaacatttaaggc
attaacagttctctgactagatttttggatcatttaagtaagcctttcat
aacttttctaaggagctaatgaagtcaactgcctgagctggtgctgatat
tctggaatagtatgtaatttaatcttaatatttttcttcttttcgcttct
ttcctttgtttaattccatgagttacattcccatacaggtgacttcctgt
aactatagcctcataaaatctatgaactcaccaacctcaattgtctccaa
aatgtagtgcttaaaaacttgggcaaatgagcctggctctgggtgttttt
tatttggtttgttgtaaaaatccatggcaggaaaaagaaaaatctactgt
gcaaaggaaaacagaagaaataaaaaaggtgaaattctcacttgtatcat
aagagatgtacagtgaggaggtaattcacaactgaaatatatcctaagag
aattctatgtactttgacatttaaattgtgagagtaacacacttcttccc
atttggtatcacctatgtacatcagtagatagaatgccacaatagttctc
taataaatcacacagtttaagataaaatggcaacagtggtcagatttact
cctgtttttctttttatgcttttatctccacatacaataagccaaggttc
accatagaaacagtctatttcagaacgcctgaaatgtgcattagcaccaa
ttgccttggcactgctagaagaaatgtgggaaccttagagaaagtggaac
cattccatacgaaataaagt

gaattcctcatgtagatgaagcattgacagcccctcagccacaacctatg
atgtacactcacccaagagcccctactcactccccaagacttatatattg
cccttgttcgccccaatgaagagagttatttcactgaagaccctctctgt
agaagactatttcctcctcattcacaccaaccaagtttttaatctaaccc
acctactctggtaagcttcattctttccagtctatcctggacacctcaag
ggcagaacctgactctggttgacgttcaaatcataatttctttccatttt
atcttgtggataaaatgcaaactcttagctactgctccacgacagtgctt
ccttgtccttttcagcaacagtgaataaagtttcccctccttccaaatct
atgcagcacttaatactcatttctttctaggtgagtacctattctagctg
ttctgaaatagaatatgaaagcagttttgatgtatatttctttaacggct
aaaaacgttcatcagtgttttatgtatttactatccactattatttatat
acagtaaaaataattatatacattttaaatgttggagtttgttttggtgt
ctgcaactctttatgattaatatttatcaacctgcatttttattggctgt
ccacccttgacatcatttcttttgcttcatattttcctttcaagtttatt
ttaaggacatttgtttttaattaaaaatctctgggcttggctttttatct
acctgtctctacactaaagaatcgtattactcattagattgttaatcaat
tttgcatatcagttttctaatgtttctgtaaaaaggaagcatgtaaagag
tatatgtgcatctgtatgtatgtgtatcagtatttgtgtgtcagtgtaca
aatgaatgtactgtggatttgcataatgctctgtgagtctctgtatgagt
gtacatgtgtttctgcatatatatgaatgtgtgtttctgtaactttgaca
tttctgtgagagccaccatgatcaagttactcttataaaagaaaccattg
aatctggagctgacttatagattcagaaattagtccattatcatcaaggt
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87791704_87792920
seq2: B6Ng01-223M08.b_43_1262

seq1  GAATTCTCTAAGTGGATGATCCTGACCTTGAACTCATAGAGATCACAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGTGGATGATCCTGACCTTGAACTCATAGAGATCACAGGC  50

seq1  ATGTACCACCACCATCCAGAAGCTTTCTACTTTCTTATATGTATAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACCACCATCCAGAAGCTTTCTACTTTCTTATATGTATAATAAT  100

seq1  TTGATAAATTTTATAACAACTTCATTTTATTGTTGCTTCTTTCTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATTTTATAACAACTTCATTTTATTGTTGCTTCTTTCTTTTTCA  150

seq1  ATTTCATATGCTTAAAGTTCTACATAGCTAAGATATTTTTCTATTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATGCTTAAAGTTCTACATAGCTAAGATATTTTTCTATTTTATT  200

seq1  CAGTTTTGAAAAGACTGACACAAAGAATTGACTTGGTATAAATACATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGAAAAGACTGACACAAAGAATTGACTTGGTATAAATACATCAA  250

seq1  CTGAAAGGTCAATTAACCTGATTTGAATCCTTATGCAGTAGAACAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGTCAATTAACCTGATTTGAATCCTTATGCAGTAGAACAAATTA  300

seq1  GTTGACTCACAGCAGTTCCTGTAGGAAAGTCATGACATTTGTTTTTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTCACAGCAGTTCCTGTAGGAAAGTCATGACATTTGTTTTTGTAC  350

seq1  AGCATAGATGTCTATTGAATAGCAATTAAATATAAGTTAGAAAACTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATGTCTATTGAATAGCAATTAAATATAAGTTAGAAAACTATCA  400

seq1  CTTAAGACTTTCAACAGATCCTTTTTCTTAAATAACTGAACATTTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTTTCAACAGATCCTTTTTCTTAAATAACTGAACATTTAAGGC  450

seq1  ATTAACAGTTCTCTGACTAGATTTTTGGATCATTTAAGTAAGCCTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGTTCTCTGACTAGATTTTTGGATCATTTAAGTAAGCCTTTCAT  500

seq1  AACTTTTCTAAGGAGCTAATGAAGTCAACTGCCTGAGCTGGTGCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTAAGGAGCTAATGAAGTCAACTGCCTGAGCTGGTGCTGATAT  550

seq1  TCTGGAATAGTATGTAATTTAATCTTAATATTTTTCTTCTTTTCGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATAGTATGTAATTTAATCTTAATATTTTTCTTCTTTTCGCTTCT  600

seq1  TTCCTTTGTTTAATTCCATGAGTTACATTCCCATACAGGTGACTTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTTTAATTCCATGAGTTACATTCCCATACAGGTGACTTCCTGT  650

seq1  AACTATAGCCTCATAAAATCTATGAACTCACCAACCTCAATTGTCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGCCTCATAAAATCTATGAACTCACCAACCTCAATTGTCTCCAA  700

seq1  AATGTAGTGCTTAAAAACTTGGGCAAATGAGCCTGGCTCTGGGTGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTGCTTAAAAACTTGGGCAAATGAGCCTGGCTCTGGGTGTTTTT  750

seq1  TATTTGGTTTGTTGTAAAAATCCATGGCAGGAAAAAGAAAAATCTACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTTTGTTGTAAAAATCCATGGCAGGAAAAAGAAAAATCTACTGT  800

seq1  GCAAAGGAAAACAGAAGAAATAAAAAAGGTGAAATTCTCACTTGTATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAAACAGAAGAAATAAAAAAGGTGAAATTCTCACTTGTATCAT  850

seq1  AAGAGATGTACAGTGAGGAGGTAATTCACAACTGAAATATATCCTAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGTACAGTGAGGAGGTAATTCACAACTGAAATATATCCTAAGAG  900

seq1  AATTCTATGTACTTTGACATTT-AATTGTGAGAGTAACACACTTCTTCCC  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATTCTATGTACTTTGACATTTAAATTGTGAGAGTAACACACTTCTTCCC  950

seq1  ATTTGGTATCACCTATGTACATCAGTAGATAGAATGCCACAATAGTTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATCACCTATGTACATCAGTAGATAGAATGCCACAATAGTTCTC  1000

seq1  TAATAAATCACAACAGTTTAAGATAAAATGGCAACAGTGGTCAGATTTAC  1049
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCAC-ACAGTTTAAGATAAAATGGCAACAGTGGTCAGATTTAC  1049

seq1  TCCTGTTTTTC-TTTTATGCTTTTATCTCCACATACAAT-AGCCAAGG-T  1096
      ||||||||||| ||||||||||||||||||||||||||| |||||||| |
seq2  TCCTGTTTTTCTTTTTATGCTTTTATCTCCACATACAATAAGCCAAGGTT  1099

seq1  CACCATAAGAAACAAGTCTATTTCAG-ACG-CTGAAATGTGGCCATTTAA  1144
      |||||| |||||| |||||||||||| ||| ||||||||||  ||||  |
seq2  CACCAT-AGAAAC-AGTCTATTTCAGAACGCCTGAAATGTG--CATT--A  1143

seq1  GCACCAAATTGCTTGGCAGTGCTAGAGAAAAATGTGGGAACC-TAGAGAA  1193
      ||||||| |  ||||||| ||||||| | ||||||||||||| |||||||
seq2  GCACCAATTGCCTTGGCACTGCTAGA-AGAAATGTGGGAACCTTAGAGAA  1192

seq1  AGT-GAACCATTCCAT---AGATAAAGT  1217
      ||| ||||||||||||   | |||||||
seq2  AGTGGAACCATTCCATACGAAATAAAGT  1220


seq1: chr18_87870264_87871369
seq2: B6Ng01-223M08.g_66_1168 (reverse)

seq1  CCCACCTTGATGATAATGGACTAATTTCTGAATCTATAAGTCAGCTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCACCTTGATGATAATGGACTAATTTCTGAATCTATAAGTCAGCTCCAG  50

seq1  ATTCAATGGTTTCTTTTATAAGAGTTAACTTGATCATGGTGGCTCTTCAC  100
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  ATTCAATGGTTTCTTTTATAAGAG-TAACTTGATCATGGTGGCTC-TCAC  98

seq1  AGAAATTGTCAAAGTTACAGAAACACACATTCATATATATGCAGAAACAC  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAA-TGTCAAAGTTACAGAAACACACATTCATATATATGCAGAAACAC  147

seq1  ATGTACACTCATACAGAGACTCACAGAGCATTATGCAAATCCACAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACTCATACAGAGACTCACAGAGCATTATGCAAATCCACAGTACA  197

seq1  TTCATTTGTACACTGACACACAAATACTGATACACATACATACAGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTACACTGACACACAAATACTGATACACATACATACAGATGCA  247

seq1  CATATACTCTTTACATGCTTCCTTTTTACAGAAACATTAGAAAACTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCTTTACATGCTTCCTTTTTACAGAAACATTAGAAAACTGATA  297

seq1  TGCAAAATTGATTAACAATCTAATGAGTAATACGATTCTTTAGTGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATTGATTAACAATCTAATGAGTAATACGATTCTTTAGTGTAGAG  347

seq1  ACAGGTAGATAAAAAGCCAAGCCCAGAGATTTTTAATTAAAAACAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGATAAAAAGCCAAGCCCAGAGATTTTTAATTAAAAACAAATGT  397

seq1  CCTTAAAATAAACTTGAAAGGAAAATATGAAGCAAAAGAAATGATGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAATAAACTTGAAAGGAAAATATGAAGCAAAAGAAATGATGTCAA  447

seq1  GGGTGGACAGCCAATAAAAATGCAGGTTGATAAATATTAATCATAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGACAGCCAATAAAAATGCAGGTTGATAAATATTAATCATAAAGAG  497

seq1  TTGCAGACACCAAAACAAACTCCAACATTTAAAATGTATATAATTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACACCAAAACAAACTCCAACATTTAAAATGTATATAATTATTTT  547

seq1  TACTGTATATAAATAATAGTGGATAGTAAATACATAAAACACTGATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATATAAATAATAGTGGATAGTAAATACATAAAACACTGATGAAC  597

seq1  GTTTTTAGCCGTTAAAGAAATATACATCAAAACTGCTTTCATATTCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGCCGTTAAAGAAATATACATCAAAACTGCTTTCATATTCTATT  647

seq1  TCAGAACAGCTAGAATAGGTACTCACCTAGAAAGAAATGAGTATTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGCTAGAATAGGTACTCACCTAGAAAGAAATGAGTATTAAGTG  697

seq1  CTGCATAGATTTGGAAGGAGGGGAAACTTTATTCACTGTTGCTGAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGATTTGGAAGGAGGGGAAACTTTATTCACTGTTGCTGAAAAGG  747

seq1  ACAAGGAAGCACTGTCGTGGAGCAGTAGCTAAGAGTTTGCATTTTATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGCACTGTCGTGGAGCAGTAGCTAAGAGTTTGCATTTTATCCA  797

seq1  CAAGATAAAATGGAAAGAAATTATGATTTGAACGTCAACCAGAGTCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAAATGGAAAGAAATTATGATTTGAACGTCAACCAGAGTCAGGT  847

seq1  TCTGCCCTTGAGGTGTCCAGGATAGACTGGAAAGAATGAAGCTTACCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTGAGGTGTCCAGGATAGACTGGAAAGAATGAAGCTTACCAGA  897

seq1  GTAGGTGGGTTAGATTAAAAACTTGGTTGGTGTGAATGAGGAGGAAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGGTTAGATTAAAAACTTGGTTGGTGTGAATGAGGAGGAAATAG  947

seq1  TCTTCTACAGAGAGGGTCTTCAGTGAAATAACTCTCTTCATTGGGGCGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACAGAGAGGGTCTTCAGTGAAATAACTCTCTTCATTGGGGCGAA  997

seq1  CAAGGGCAATATATAAGTCTTGGGGAGTGAGTAGGGGCTCTTGGGTGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCAATATATAAGTCTTGGGGAGTGAGTAGGGGCTCTTGGGTGAGT  1047

seq1  GTACATCATAGGTTGTGGCTGAGGGGCTGTCAATGCTTCATCTACATGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCATAGGTTGTGGCTGAGGGGCTGTCAATGCTTCATCTACATGAG  1097

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1103


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