BAC Information

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BAC

Clone NameB6Ng01-225C09
Chromosome18 (Build37)
Map Location 36,919,561 - 36,920,199
singlet/doubletsinglet
Overlap geneWdr55
Upstream geneLOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik
Downstream geneDnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C09.bB6Ng01-225C09.g
ACCGA039415GA039416
length1,216639
definitionB6Ng01-225C09.b B6Ng01-225C09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacaaagactttaatttctttctttatttcttccctgaccaagt
tgtgtagagagttgttcagtttccatgaatatgttggctttctgttgtta
ttgttgtccagccttagtccatgatgatatgatagaatacatgggattat
ttcaatcttcttgtatctgttttctctttatttatattatttatcataat
tctctttatgattatttcctgatgtgcactgaaaacctgttaccatattc
ctaaatcacaagatcaagaaactcagacccaaccaggaatgaatgctttc
tttgatcattatttgtccagagcctatttttcctgccactaaaatcacac
gcttgtaattcatgaatactcactgtactcttttgttttattcatgcagc
tctagaaagcctgtgaggagatggcacatgctattctctattctaacttt
aatctttctatcaactaccttaatctctcccaattatttatattaagtaa
tcttcctaaaactacttaagtcaaatcaggaattccataaaatcattaat
tcatataaacagcattatctcaagaactttcatcttcatgttgatctgca
gaaaactttcctagcagagtggactatcacccaggaagtaatcacactag
gatatagtgagggtctcacagtgtccacttaaaggaatccaaataaatga
ggagtatggcaatgacagacatgagaaaacacatcagtagcaaaaatcaa
tcctggggcaaagtctctggggccatgcctttccagagtgcagccatcat
agctgagcaagatggcaggctatctccagagagttcacttgcccactgta
gctcttcctacatggcacctgccagattaataaacagaagaaggtgggaa
gataggtaagctggaatgacaggatacaagtggtttcataggaaaatggg
aaacaggggctctttatgggaagatggagggaaataaaatacagagagga
gtggtgggtaatataacaatgtggatatctgaaaagtcataagaaatcat
acatttactatgttatcttttagaaacttatgaaaaacactcagatatgt
gtgtatatataggttttttaattaatccaattgaaatcattttaacccca
attcatcccaccttgtccaccactctgatgagctcaaaatccacactcac
ctgctctagacgcgca
gaattcatatcacacgaaaaaacctggctgggggccggcggaagggcatc
ctctgaaaccacacctatacgttctgcagtgcctttcttccttagctcct
ttttctcttggcctttgtgtttaaaacgtacttatacaccaacaagacaa
ctgaaaactttagtgagctgtaactcggcttcatttaaagaaacaaaagg
gtatgctttgttgagtcttagaggaagctgcacgctgcgctcgcttaatt
cgcatcagctgcggcaggcccgcctcttctgaaatcctcccagtgcactt
ccgatcccgcctcctcccggaagcaactgcttaggccacgcccctgtcca
tgaagttggtcccaagcgcgcgtggatcctatggaccccacgtgtgaaga
gagtcctgcagaggactcaaacaatgaagaggaagaccttgactccacga
aggcagcaccccggatccgtgataccccagaagacatcgtgctggaagcc
ccagccagtggcctggcgttccatccgactcgagatctgctggcagcagg
ggacgtggacggagatgtgttcgtgtgagtggggcgtagggtgaagtgtg
ttaaaactgctctggatggaggtaggggtaggaagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36919561_36920199
seq2: B6Ng01-225C09.g_66_704

seq1  GAATTCATATCACACGAAAAAACCTGGCTGGGGGCCGGCGGAAGGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCACACGAAAAAACCTGGCTGGGGGCCGGCGGAAGGGCATC  50

seq1  CTCTGAAACCACACCTATACGTTCTGCAGTGCCTTTCTTCCTTAGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACCACACCTATACGTTCTGCAGTGCCTTTCTTCCTTAGCTCCT  100

seq1  TTTTCTCTTGGCCTTTGTGTTTAAAACGTACTTATACACCAACAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTGGCCTTTGTGTTTAAAACGTACTTATACACCAACAAGACAA  150

seq1  CTGAAAACTTTAGTGAGCTGTAACTCGGCTTCATTTAAAGAAACAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACTTTAGTGAGCTGTAACTCGGCTTCATTTAAAGAAACAAAAGG  200

seq1  GTATGCTTTGTTGAGTCTTAGAGGAAGCTGCACGCTGCGCTCGCTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTTGTTGAGTCTTAGAGGAAGCTGCACGCTGCGCTCGCTTAATT  250

seq1  CGCATCAGCTGCGGCAGGCCCGCCTCTTCTGAAATCCTCCCAGTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCAGCTGCGGCAGGCCCGCCTCTTCTGAAATCCTCCCAGTGCACTT  300

seq1  CCGATCCCGCCTCCTCCCGGAAGCAACTGCTTAGGCCACGCCCCTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCCCGCCTCCTCCCGGAAGCAACTGCTTAGGCCACGCCCCTGTCCA  350

seq1  TGAAGTTGGTCCCAAGCGCGCGTGGATCCTATGGACCCCACGTGTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGGTCCCAAGCGCGCGTGGATCCTATGGACCCCACGTGTGAAGA  400

seq1  GAGTCCTGCAGAGGACTCAAACAATGAAGAGGAAGACCTTGACTCCACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGCAGAGGACTCAAACAATGAAGAGGAAGACCTTGACTCCACGA  450

seq1  AGGCAGCACCCCGGATCCGTGATACCCCAGAAGACATCGTGCTGGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCACCCCGGATCCGTGATACCCCAGAAGACATCGTGCTGGAAGCC  500

seq1  CCAGCCAGTGGCCTGGCGTTCCATCCGACTCGAGATCTGCTGGCAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTGGCCTGGCGTTCCATCCGACTCGAGATCTGCTGGCAGCAGG  550

seq1  GGACGTGGACGGAGATGTGTTCGTGTGAGTGGGGCGTAGGGTGAAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGGACGGAGATGTGTTCGTGTGAGTGGGGCGTAGGGTGAAGTGTG  600

seq1  TTAAAACTGCTCTGGATGGAGGTAGGGGTAGGAAGTGTG  639
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTGCTCTGGATGGAGGTAGGGGTAGGAAGTGTG  639