BAC Information

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BAC

Clone NameB6Ng01-225I11
Chromosome18 (Build37)
Map Location 3,320,970 - 3,322,120
singlet/doubletsinglet
Overlap geneCrem
Upstream geneLOC664794
Downstream geneEG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225I11.bB6Ng01-225I11.g
ACCGA039699GA039700
length9961,151
definitionB6Ng01-225I11.b B6Ng01-225I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttattttaatttttttaagatgtatttattgattata
tgtaagtacactgtagctgtcttcagacactccagaagagggagtcagat
cttgttacagatgtttgtgagccaccatgtggttgctgggatttgaactc
cgggccttcggaagagcagtcgggtgctcttacccactgagccatctcac
cagcccttattgtttttaatagctgattagtactccattgtgtaatgtac
aacatttactgtatccattcctctgttgaaggacatctgagttctttcca
acttctggctactataataaataaggttgctatgaacatagtggaacatg
tgtccttattacatgttggagcatcttctgggtatatgcccaggagtggt
atgtattgctgggtactcagatagtactatgtccaattttctgaggaacc
accaaactgatttccagagtggttgtaccagtttttaatcccaccagcaa
tggaggagtgttcctctttctccatatcctcactagcatctgctgtcacc
tgattttttttatcttagccattctgacagttgtgaggtggaatctcagg
cttgttttgatttgcatttccctgatgactaaggattttgaaccattttt
taggtgcttctcagccattcagtattcctcagttgagaattctttgttta
gctctgtaccccatttttaatagggctatttggttctctggagtcctact
tccaagattcaattcagagaccacatgaagctcaagaaggaagactaaag
tgtggatactttggtccttcttagaaggatcaaaatacccatgggaaaag
atacagagacaaagtgtggagcagagactgaaggaaagaccagagactgc
cccacctgtggatccattcgatatacagttaccaaaccaagacactaatt
gtgggtgccaacaagtgcttgctgacaggagcctgagataactgtc

gaattccattttcctgctgtgccctaacttgccttaattgtaaaggtagc
tttttcataggttttcctaaatccttgtcagaaaggagagagaattcaag
attagattgattattaaattgtccaccattcagggtcattttcaagcaat
ggaggatacatgtctaaaggaggctccagtaagggagctgagggaaatgg
cacagttgctggtggatttggtctgacttttgagcatgaacggggaaagt
aaagctcacacctgagtgaagcatacaatcctaaggacgagctgtgcatg
acagatacatctcatagacacagagaaacaaataatagccaggggaaggt
ctcttttgccaattttaaggttcttgtattcattcaaggaattggtcata
agtattttgataacaatctagtgacctaaaattgaacagggatcttttcc
ccttgttattgttgcctcttcaatattgtttcaaacactgtcccgtactt
ctttatctaaagttccttcttctggaaaccataaacaatgtacaagtaat
ctaatagttgtgattttgatacttgtctcctcctttctttaaggaatgat
gcaaaagcttgacataaggcaaaagtcttccctggtttctgttccattat
gctcactcactctttctgtgaggatccccactctattatttcatagctga
cttcaggttcctgattccttgtactgctctagctgacaacatgaacctgg
gagagcagagcctaagaggtgacctaaagtctcatgcaatagccaacttt
attagagcattagataatctaaactctaagggttacgaagagtcacttga
ataaagtatacaatcacaggaccagcgccacatgggtaaaaacatgtttt
tccatagaggcatgtaaagaaataatatccagttgcaatgaattaatctg
ggaggggggggttgggcatgaaagcacattccaagaacatcccattatta
tggaagatagagatttacagatcttgtttgtttactttgagtttttctca
cagttctccagaaatttcctcacccagctttcatttatgactgtttctga
tcttttaacaggtccacgagctggaatcgcattcagcatgaatcctgtgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3320970_3322120
seq2: B6Ng01-225I11.g_65_1215 (reverse)

seq1  CCCACA-GATTCATGCTTGAATGTTTGATTCCCAGTTGGTGGA-CTGTTT  48
      |||||| ||||||||| ||||||   |||| |||| | ||||| ||||| 
seq2  CCCACAGGATTCATGC-TGAATG--CGATT-CCAGCTCGTGGACCTGTT-  45

seq1  AAAAAGATTCAG-AACAGTCCATAAATG-AAGCTGTGTGAGGAAATTTCT  96
       |||||| |||| |||||| |||||||| |||||| ||||||||||||||
seq2  -AAAAGA-TCAGAAACAGT-CATAAATGAAAGCTGGGTGAGGAAATTTCT  92

seq1  -GAGACCTTGTGAG-AAAACTCCAAGTAAACAAAACAAGATTCTTGTAAT  144
       |||| | |||||| ||||||| |||||||| |||||||| |||   |||
seq2  GGAGAAC-TGTGAGAAAAACTCAAAGTAAAC-AAACAAGA-TCTGTAAAT  139

seq1  CTCTATTCTTCCATAAT-ATGGATTGTTCTTGGAATGTGCTTTCATGCCC  193
      ||||| ||||||||||| ||||  ||||||||||||||||||||||||||
seq2  CTCTA-TCTTCCATAATAATGGGATGTTCTTGGAATGTGCTTTCATGCCC  188

seq1  A--CCCCCCCT-CCAGATT-ATTCATTGCAACTGGATATTATTTCTTTAC  239
      |  |||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AACCCCCCCCTCCCAGATTAATTCATTGCAACTGGATATTATTTCTTTAC  238

seq1  ATGCCTCTATGGAAAAACATGTTTTTA-CCATGTGGCGCTGGTCCTGTGA  288
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGCCTCTATGGAAAAACATGTTTTTACCCATGTGGCGCTGGTCCTGTGA  288

seq1  TTGTATACTTTATTCAAGTGACTCTTCGTAACCCTTAGAGTTTAGATTAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACTTTATTCAAGTGACTCTTCGTAACCCTTAGAGTTTAGATTAT  338

seq1  CTAATGCTCTAATAAAGTTGGCTATTGCATGAGACTTTAGGTCACCTCTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTCTAATAAAGTTGGCTATTGCATGAGACTTTAGGTCACCTCTT  388

seq1  AGGCTCTGCTCTCCCAGGTTCATGTTGTCAGCTAGAGCAGTACAAGGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGCTCTCCCAGGTTCATGTTGTCAGCTAGAGCAGTACAAGGAAT  438

seq1  CAGGAACCTGAAGTCAGCTATGAAATAATAGAGTGGGGATCCTCACAGAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCTGAAGTCAGCTATGAAATAATAGAGTGGGGATCCTCACAGAA  488

seq1  AGAGTGAGTGAGCATAATGGAACAGAAACCAGGGAAGACTTTTGCCTTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTGAGCATAATGGAACAGAAACCAGGGAAGACTTTTGCCTTAT  538

seq1  GTCAAGCTTTTGCATCATTCCTTAAAGAAAGGAGGAGACAAGTATCAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTTTTGCATCATTCCTTAAAGAAAGGAGGAGACAAGTATCAAAA  588

seq1  TCACAACTATTAGATTACTTGTACATTGTTTATGGTTTCCAGAAGAAGGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTATTAGATTACTTGTACATTGTTTATGGTTTCCAGAAGAAGGA  638

seq1  ACTTTAGATAAAGAAGTACGGGACAGTGTTTGAAACAATATTGAAGAGGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATAAAGAAGTACGGGACAGTGTTTGAAACAATATTGAAGAGGC  688

seq1  AACAATAACAAGGGGAAAAGATCCCTGTTCAATTTTAGGTCACTAGATTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACAAGGGGAAAAGATCCCTGTTCAATTTTAGGTCACTAGATTG  738

seq1  TTATCAAAATACTTATGACCAATTCCTTGAATGAATACAAGAACCTTAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAATACTTATGACCAATTCCTTGAATGAATACAAGAACCTTAAA  788

seq1  ATTGGCAAAAGAGACCTTCCCCTGGCTATTATTTGTTTCTCTGTGTCTAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAAAGAGACCTTCCCCTGGCTATTATTTGTTTCTCTGTGTCTAT  838

seq1  GAGATGTATCTGTCATGCACAGCTCGTCCTTAGGATTGTATGCTTCACTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTATCTGTCATGCACAGCTCGTCCTTAGGATTGTATGCTTCACTC  888

seq1  AGGTGTGAGCTTTACTTTCCCCGTTCATGCTCAAAAGTCAGACCAAATCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGCTTTACTTTCCCCGTTCATGCTCAAAAGTCAGACCAAATCC  938

seq1  ACCAGCAACTGTGCCATTTCCCTCAGCTCCCTTACTGGAGCCTCCTTTAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAACTGTGCCATTTCCCTCAGCTCCCTTACTGGAGCCTCCTTTAG  988

seq1  ACATGTATCCTCCATTGCTTGAAAATGACCCTGAATGGTGGACAATTTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATCCTCCATTGCTTGAAAATGACCCTGAATGGTGGACAATTTAA  1038

seq1  TAATCAATCTAATCTTGAATTCTCTCTCCTTTCTGACAAGGATTTAGGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATCTAATCTTGAATTCTCTCTCCTTTCTGACAAGGATTTAGGAA  1088

seq1  AACCTATGAAAAAGCTACCTTTACAATTAAGGCAAGTTAGGGCACAGCAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGAAAAAGCTACCTTTACAATTAAGGCAAGTTAGGGCACAGCAG  1138

seq1  GAAAATGGAATTC  1151
      |||||||||||||
seq2  GAAAATGGAATTC  1151


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