BAC Information

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BAC

Clone NameB6Ng01-225N13
Chromosome18 (Build37)
Map Location 34,988,007 - 35,026,816
singlet/doubletdoublet
Overlap geneJmjd1b, Reep2, Egr1
Upstream geneEpb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887
Downstream geneEtf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225N13.bB6Ng01-225N13.g
ACCGA039937GA039938
length1,168862
definitionB6Ng01-225N13.b B6Ng01-225N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,988,007 - 34,989,171)(35,025,958 - 35,026,816)
sequence
gaattctcatggagcacagcatgtgtagatggttctcattgggttgcttt
tgttttcacagccagtgctagtttcaggggtgcataaaaagctcaagtct
gaactctggaagccggaagccttcagccaggagtttggagaccaggacgt
ggacttggtgaactgcaggaattgtgctatcatttccgatgttaaagttc
gagatttctgggatggctttgagatcatatgcagtaagtaacttggttat
ctggttaaatagagacagtgtagtcctgcacctgaaataacagcccatcc
cccatggagggaggagccttctgtttcgaccccagctgaacagagctgca
tggcagtcctgtcatcccagagcaggcctgctgcgcttcatggaagactt
aggttgtatggaactctgttgctctaaggaaaggagcaagaacctgcgaa
atggagcagtaacagcgtgggtggagaaagcaaggctcacctcacctggc
ccattatgaaatgagaggttgcatctctcaacaccggtccctagattagt
caggagaggtttatgagaatgctgtctgtattctagagagactacggtca
gaagatgggcagccaatggtgctcaaactcaaagactggccccctgggga
agatttccgggacatgatgcctacaaggtgagtggtttcagatagtaccg
tcctcacgggcttgtgctgggtggaatccagcagagcccaggcacagaga
cctgagctctagctcttgttttcctccctgcagcaaactgagtcatcttt
cttgccctttcttaggtttgaagatctgatggagaatcttcctcttccag
aatataccaaacgagatggcaggctcaatctggcttctaggctacccagc
tactttgtaaagcctgatctgggccccaagatgtacaacgcctatggtat
gagggagaggacagagttgcccttcggggggggactgctgtcctcgttta
atatggagagatgattggggggcaggtgacagtgctgaaaaaaaatcata
acctcgtgttcctttgtcagtactgacttggtgaatacattcataagctg
gtattctatagaaaacaagttgtctaaaatcctactcaagcagaaacata
ttcctaagttttaacttt
gaattcctagagggccagcatgttctacctcagatctacatctgtttctc
cccctttctcatttcttccatgctatggtcttggtctttttcatatttcc
gagatgctaaacaatgtccccgggtagcaatcactagttcagcactcttt
ccaaatgtcagtttttactatggtcacagcttttatcagcactgttctga
gcctttggttgcagctatccctcttaggagcaagagatgaaattaatgct
gttgtcattttggttgcttcttctggaacccaggctttgtgcatgttctg
aaagagccctgttggagagctacaccctcagaccctggcaacacacctat
attcttggtctataaaacagggcaattttttgagtggtgccctatttcaa
tcatgcaaaagaacttgagtttggagtgttagaatctaataaaaaccttg
gtgccaagactggcaaaaattggctagcaatcttggcagaatttctcagc
cagccatctgcctaggaatgaccttgttatcaaggccagtaccaaaagcc
accccggatgcaaggcagcaatggggctctctgggaaacaaggccagtta
tttcacacgagggccctcaaactccacggtaaagaagttgccttgacttc
ttcctccccacacacttggacttccgatgcgctttgtttcttgggaattt
ggggtgaggaaggctaaggaatgcacagcaggcacagacctgtgttccta
agtacagagggagatggaggaggggtaggtggggctaggaagaggtctgc
caactctaatgtcctatggggacttggcagttctgcctgggaagttggca
gggtatgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34988007_34989171
seq2: B6Ng01-225N13.b_46_1213

seq1  GAATTCTCATGGAGCACAGCATGTGTAGATGGTTCTCATTGGGTTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGAGCACAGCATGTGTAGATGGTTCTCATTGGGTTGCTTT  50

seq1  TGTTTTCACAGCCAGTGCTAGTTTCAGGGGTGCATAAAAAGCTCAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACAGCCAGTGCTAGTTTCAGGGGTGCATAAAAAGCTCAAGTCT  100

seq1  GAACTCTGGAAGCCGGAAGCCTTCAGCCAGGAGTTTGGAGACCAGGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGAAGCCGGAAGCCTTCAGCCAGGAGTTTGGAGACCAGGACGT  150

seq1  GGACTTGGTGAACTGCAGGAATTGTGCTATCATTTCCGATGTTAAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGTGAACTGCAGGAATTGTGCTATCATTTCCGATGTTAAAGTTC  200

seq1  GAGATTTCTGGGATGGCTTTGAGATCATATGCAGTAAGTAACTTGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTGGGATGGCTTTGAGATCATATGCAGTAAGTAACTTGGTTAT  250

seq1  CTGGTTAAATAGAGACAGTGTAGTCCTGCACCTGAAATAACAGCCCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAATAGAGACAGTGTAGTCCTGCACCTGAAATAACAGCCCATCC  300

seq1  CCCATGGAGGGAGGAGCCTTCTGTTTCGACCCCAGCTGAACAGAGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGGGAGGAGCCTTCTGTTTCGACCCCAGCTGAACAGAGCTGCA  350

seq1  TGGCAGTCCTGTCATCCCAGAGCAGGCCTGCTGCGCTTCATGGAAGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCCTGTCATCCCAGAGCAGGCCTGCTGCGCTTCATGGAAGACTT  400

seq1  AGGTTGTATGGAACTCTGTTGCTCTAAGGAAAGGAGCAAGAACCTGCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTATGGAACTCTGTTGCTCTAAGGAAAGGAGCAAGAACCTGCGAA  450

seq1  ATGGAGCAGTAACAGCGTGGGTGGAGAAAGCAAGGCTCACCTCACCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAGTAACAGCGTGGGTGGAGAAAGCAAGGCTCACCTCACCTGGC  500

seq1  CCATTATGAAATGAGAGGTTGCATCTCTCAACACCGGTCCCTAGATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGAAATGAGAGGTTGCATCTCTCAACACCGGTCCCTAGATTAGT  550

seq1  CAGGAGAGGTTTATGAGAATGCTGTCTGTATTCTAGAGAGACTACGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGTTTATGAGAATGCTGTCTGTATTCTAGAGAGACTACGGTCA  600

seq1  GAAGATGGGCAGCCAATGGTGCTCAAACTCAAAGACTGGCCCCCTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGCAGCCAATGGTGCTCAAACTCAAAGACTGGCCCCCTGGGGA  650

seq1  AGATTTCCGGGACATGATGCCTACAAGGTGAGTGGTTTCAGATAGTACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCGGGACATGATGCCTACAAGGTGAGTGGTTTCAGATAGTACCG  700

seq1  TCCTCACGGGCTTGTGCTGGGTGGAATCCAGCAGAGCCCAGGCACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGGGCTTGTGCTGGGTGGAATCCAGCAGAGCCCAGGCACAGAGA  750

seq1  CCTGAGCTCTAGCTCTTGTTTTCCTCCCTGCAGCAAACTGAGTCATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCTAGCTCTTGTTTTCCTCCCTGCAGCAAACTGAGTCATCTTT  800

seq1  CTTGCCCTTTCTTAGGTTTGAAGATCTGATGGAGAATCTTCCTCTTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTTTCTTAGGTTTGAAGATCTGATGGAGAATCTTCCTCTTCCAG  850

seq1  AATATACCAAACGAGATGGCAGGCTCAATCTGGCTTCTAGGCTACCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCAAACGAGATGGCAGGCTCAATCTGGCTTCTAGGCTACCCAGC  900

seq1  TACTTTGTAAGGCCTGATCTGGGCCCCAAGATGTACAACGCCTATGGTAT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTAAAGCCTGATCTGGGCCCCAAGATGTACAACGCCTATGGTAT  950

seq1  GAGGGAGAGGACAGAGTTGCCCTTC-GGGGGGGACTGCTGTCCTCGTTTT  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GAGGGAGAGGACAGAGTTGCCCTTCGGGGGGGGACTGCTGTCCTCGTTTA  1000

seq1  ATATGGAGAGATGATT-GGGGGCAGGTGACAGGTGCTGAAAAAAAATCAT  1048
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATATGGAGAGATGATTGGGGGGCAGGTGACA-GTGCTGAAAAAAAATCAT  1049

seq1  A--CTCGTGTTCCTTTGTCAGTACTGACTT-GTG-ATACATTCATAAGCT  1094
      |  ||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  AACCTCGTGTTCCTTTGTCAGTACTGACTTGGTGAATACATTCATAAGCT  1099

seq1  TGTGTATCTATTAGAAACAGTTTGTTCTTAAAAATTCTACTCAAGCAG--  1142
       || | |||||   |||||  ||| |||  ||||| ||||||||||||  
seq2  GGTAT-TCTATAGAAAACAAGTTG-TCT--AAAATCCTACTCAAGCAGAA  1145

seq1  ACATATT-CTTAGTTTTATACTTT  1165
      ||||||| || ||||||| |||||
seq2  ACATATTCCTAAGTTTTA-ACTTT  1168

seq1: chr18_35025958_35026816
seq2: B6Ng01-225N13.g_64_925 (reverse)

seq1  GAGCACAT-CCCTGCCAACCT-CCTGGCAAAACTGCCAAGTCCCCATAGG  48
      |||||||| |||||||||| | || |||| ||||||||||||||||||||
seq2  GAGCACATACCCTGCCAACTTCCCAGGCAGAACTGCCAAGTCCCCATAGG  50

seq1  ACATTTGTGTTGGCAGACCTCTTCCTAGCCCCACCTA-CCCTCCTCCATC  97
      ||||| | ||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATTAGAGTTGGCAGACCTCTTCCTAGCCCCACCTACCCCTCCTCCATC  100

seq1  TCCCTCTGTACTTAGGAACACAGGTCTGTGCCTGCTGTGCATTCCTTAGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTACTTAGGAACACAGGTCTGTGCCTGCTGTGCATTCCTTAGC  150

seq1  CTTCCTCACCCCAAATTCCCAAGAAACAAAGCGCATCGGAAGTCCAAGTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCACCCCAAATTCCCAAGAAACAAAGCGCATCGGAAGTCCAAGTG  200

seq1  TGTGGGGAGGAAGAAGTCAAGGCAACTTCTTTACCGTGGAGTTTGAGGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAGGAAGAAGTCAAGGCAACTTCTTTACCGTGGAGTTTGAGGGC  250

seq1  CCTCGTGTGAAATAACTGGCCTTGTTTCCCAGAGAGCCCCATTGCTGCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGTGAAATAACTGGCCTTGTTTCCCAGAGAGCCCCATTGCTGCCT  300

seq1  TGCATCCGGGGTGGCTTTTGGTACTGGCCTTGATAACAAGGTCATTCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCGGGGTGGCTTTTGGTACTGGCCTTGATAACAAGGTCATTCCTA  350

seq1  GGCAGATGGCTGGCTGAGAAATTCTGCCAAGATTGCTAGCCAATTTTTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGCTGGCTGAGAAATTCTGCCAAGATTGCTAGCCAATTTTTGC  400

seq1  CAGTCTTGGCACCAAGGTTTTTATTAGATTCTAACACTCCAAACTCAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGGCACCAAGGTTTTTATTAGATTCTAACACTCCAAACTCAAGT  450

seq1  TCTTTTGCATGATTGAAATAGGGCACCACTCAAAAAATTGCCCTGTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCATGATTGAAATAGGGCACCACTCAAAAAATTGCCCTGTTTTA  500

seq1  TAGACCAAGAATATAGGTGTGTTGCCAGGGTCTGAGGGTGTAGCTCTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAGAATATAGGTGTGTTGCCAGGGTCTGAGGGTGTAGCTCTCCA  550

seq1  ACAGGGCTCTTTCAGAACATGCACAAAGCCTGGGTTCCAGAAGAAGCAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTCTTTCAGAACATGCACAAAGCCTGGGTTCCAGAAGAAGCAAC  600

seq1  CAAAATGACAACAGCATTAATTTCATCTCTTGCTCCTAAGAGGGATAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGACAACAGCATTAATTTCATCTCTTGCTCCTAAGAGGGATAGCT  650

seq1  GCAACCAAAGGCTCAGAACAGTGCTGATAAAAGCTGTGACCATAGTAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAAAGGCTCAGAACAGTGCTGATAAAAGCTGTGACCATAGTAAAA  700

seq1  ACTGACATTTGGAAAGAGTGCTGAACTAGTGATTGCTACCCGGGGACATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTTGGAAAGAGTGCTGAACTAGTGATTGCTACCCGGGGACATT  750

seq1  GTTTAGCATCTCGGAAATATGAAAAAGACCAAGACCATAGCATGGAAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCATCTCGGAAATATGAAAAAGACCAAGACCATAGCATGGAAGAA  800

seq1  ATGAGAAAGGGGGAGAAACAGATGTAGATCTGAGGTAGAACATGCTGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGGGGGAGAAACAGATGTAGATCTGAGGTAGAACATGCTGGCC  850

seq1  CTCTAGGAATTC  859
      ||||||||||||
seq2  CTCTAGGAATTC  862