BAC Information

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BAC

Clone NameB6Ng01-226C06
Chromosome18 (Build37)
Map Location 51,491,866 - 51,660,254
singlet/doubletdoublet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C06.bB6Ng01-226C06.g
ACCGA040156GA040157
length1,1981,113
definitionB6Ng01-226C06.b B6Ng01-226C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,491,866 - 51,493,043)(51,659,140 - 51,660,254)
sequence
gaattctcttgagacccagttaagctaagctccaatctacaagtatagca
gtgcatcatttatatgtcaagggttatttgtctctaaagttggaacagtc
attgattggccatttcctcaatctctgctccatctttatctctcctcatc
ttgtaggcaggacagattttaggtggaaagttttttgggtaggatgatgt
ccctctctcttcattgaaggtccctcttggctacaggagctggctacttc
agtctccatatcccccactactaggagtctcagttatggtcaccccatag
tcttgaaggggctctctcatcccaggtctcaagctagtcccggagacact
ccccaccaaattctctctccctcccagccatcttccactcccctgtcccc
acaactgattcctcccctcatctgttcccctccttactccttctcccacc
cagttacctccctccctccagctccaatgtctattttattttcccgtctt
aatgagatgcatttaattaaatcaactaaatatcttagacagttgtttta
ttattttacattaatgggtgtgtaattaagcattcaaattatagtgagga
gtctgagtacaaaatatagttagtatctcatctgagagcccaaagctctg
aagtggctctgagtccaaacctaggatctctattagtttgacaccagtta
ttgctgagcctttgtgcctgttttccatacatgttatacttgtgaaatgg
atcaattaaactgagagccatatgaggatgtggtatttaaatattaaatg
ctacgataaatgaagatgagtgagacctaggaagaaatctgagtaaatct
gacataaacccaatcttttcacagcgtatctccagtacaagaaaagcctc
aaacccactctctagacacagttttgatatattacaaaacctgtgggtct
ttctagtaaccctgtgttcacacaagtattttacatataggcacaattat
aatataaatcttctaaacttgtcctattattttttgtaaagatgttcttc
tggagcctctagatagggatataaatcaaacataggattttcatcatgta
ggtatatgactgtacctcctaagttatttatcacataacttttcatcaga
aggtgaatttagtgcagaaatacatagaggcctattgtcttgtctgtc

gaattccactaggttcctggaaacgcctactctttctcaacataattcaa
tgtattttgaccttagggcgtagcaggttaagctgatgggaaatgaagtt
cgttctggaaagaagtttgtgtttccttatactaagtcagaaaaagttca
tcttgcagaatgtatttgtgtataatctataaatctacttgcttgtagtt
ttctattagtattactattattgactaccaatataggaaatatgtagtta
tcgttattgtggcctttggttgactttatgtcatgtaaaaacagttttgc
atatggttttcattttttaaaggcaaattttcttagagtttattcatatt
gttggatatactgtacttatgaatccaagaagaatttttaaattttaaac
aaaacttcatcaaccaaaaatgcatatggtggaaacctcgtattaaaaaa
tataatacatatttctaaaatgaaaattttaatggtatatattgcccatc
aaagtagatcagtcctaaaaatggtgttttacacaagctgttataaggca
gggatgattccattataattgtattactggaaatttttagagagtgaagt
catgcttaaaactttaatctattctcaatgaaaaacattgttggtccttg
attcattttgtattaaatacacctgtgaaaataaaaacataacaatttca
ctcctttaaaattagaacaaacccaggtccagaaatatgctacttaaacc
acaaaatatgcaactttccaaagcaatttgaaaactattatccttatcat
aaactacttgcgtactcgggatatctgacattgcctttgtaactttccag
tgggccaatattcatctcatctcagaaaacctgaaatgtctcaaccatgt
atggtatttattcagcaatattaatcttcagaaacttctaataaagtcat
aactagagagaaataaattcactgtggcctgagtatactttagctaccac
tagatgtgcgaaaactatctatggtttcttttcatgtatgcttactggag
aaataatattggtcttctgattaatagtgctagaataaaacatacatctg
ttaatggatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51491866_51493043
seq2: B6Ng01-226C06.b_56_1238

seq1  CCAGTTAAGCTAAGCTCCAATCTACAAGTATAGCAGTGCATCATTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAAGCTAAGCTCCAATCTACAAGTATAGCAGTGCATCATTTATAT  50

seq1  GTCAAGGGTTATTTGTCTCTAAAGTTGGAACAGTCATTGATTGGCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGTTATTTGTCTCTAAAGTTGGAACAGTCATTGATTGGCCATTT  100

seq1  CCTCAATCTCTGCTCCATCTTTATCTCTCCTCATCTTGTAGGCAGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCTCTGCTCCATCTTTATCTCTCCTCATCTTGTAGGCAGGACAG  150

seq1  ATTTTAGGTGGAAAGTTTTTTGGGTAGGATGATGTCCCTCTCTCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTGGAAAGTTTTTTGGGTAGGATGATGTCCCTCTCTCTTCATT  200

seq1  GAAGGTCCCTCTTGGCTACAGGAGCTGGCTACTTCAGTCTCCATATCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCCCTCTTGGCTACAGGAGCTGGCTACTTCAGTCTCCATATCCCC  250

seq1  CACTACTAGGAGTCTCAGTTATGGTCACCCCATAGTCTTGAAGGGGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTAGGAGTCTCAGTTATGGTCACCCCATAGTCTTGAAGGGGCTCT  300

seq1  CTCATCCCAGGTCTCAAGCTAGTCCCGGAGACACTCCCCACCAAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCAGGTCTCAAGCTAGTCCCGGAGACACTCCCCACCAAATTCTC  350

seq1  TCTCCCTCCCAGCCATCTTCCACTCCCCTGTCCCCACAACTGATTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCCAGCCATCTTCCACTCCCCTGTCCCCACAACTGATTCCTCC  400

seq1  CCTCATCTGTTCCCCTCCTTACTCCTTCTCCCACCCAGTTACCTCCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGTTCCCCTCCTTACTCCTTCTCCCACCCAGTTACCTCCCTCC  450

seq1  CTCCAGCTCCAATGTCTATTTTATTTTCCCGTCTTAATGAGATGCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCCAATGTCTATTTTATTTTCCCGTCTTAATGAGATGCATTTA  500

seq1  ATTAAATCAACTAAATATCTTAGACAGTTGTTTTATTATTTTACATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCAACTAAATATCTTAGACAGTTGTTTTATTATTTTACATTAAT  550

seq1  GGGTGTGTAATTAAGCATTCAAATTATAGTGAGGAGTCTGAGTACAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTAATTAAGCATTCAAATTATAGTGAGGAGTCTGAGTACAAAAT  600

seq1  ATAGTTAGTATCTCATCTGAGAGCCCAAAGCTCTGAAGTGGCTCTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGTATCTCATCTGAGAGCCCAAAGCTCTGAAGTGGCTCTGAGTC  650

seq1  CAAACCTAGGATCTCTATTAGTTTGACACCAGTTATTGCTGAGCCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAGGATCTCTATTAGTTTGACACCAGTTATTGCTGAGCCTTTGT  700

seq1  GCCTGTTTTCCATACATGTTATACTTGTGAAATGGATCAATTAAACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTCCATACATGTTATACTTGTGAAATGGATCAATTAAACTGAG  750

seq1  AGCCATATGAGGATGTGGTATTTAAATATTAAATGCTACGATAAATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATGAGGATGTGGTATTTAAATATTAAATGCTACGATAAATGAAG  800

seq1  ATGAGTGAGACCTAGGAAGAAATCTGAGTAAATCTGACATAAACCCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGAGACCTAGGAAGAAATCTGAGTAAATCTGACATAAACCCAATC  850

seq1  TTTTCACAGCGTATCTCCAGTACAAGAAAAGCCTCAAACCCACTCTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGCGTATCTCCAGTACAAGAAAAGCCTCAAACCCACTCTCTAG  900

seq1  ACACAGTTTTGATATATTACAAAACCTGTGGGTCTTTCTAGTAACCCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTTGATATATTACAAAACCTGTGGGTCTTTCTAGTAACCCTGT  950

seq1  GTTCACACAAGTATTTTACATATAGGCAACAATTATAAATATAAATCTTC  1000
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTTCACACAAGTATTTTACATATAGGC-ACAATTAT-AATATAAATCTTC  998

seq1  TAAACTTGTCCTATTA-TTTTTGTAAAGATG-TCTTCTTGAG-CTCTAGA  1047
      |||||||||||||||| |||||||||||||| |||||| ||| |||||||
seq2  TAAACTTGTCCTATTATTTTTTGTAAAGATGTTCTTCTGGAGCCTCTAGA  1048

seq1  TA-GGATATAAATCAAACATA-GAATTTCATCATGTAAGGTATATGACTG  1095
      || |||||||||||||||||| || ||||||||||| |||||||||||||
seq2  TAGGGATATAAATCAAACATAGGATTTTCATCATGT-AGGTATATGACTG  1097

seq1  TAC--TCTAAGTTA-TTATCAACATTACTTTTCATCAGAA-GTG-ATTTA  1140
      |||   |||||||| ||||| |||| |||||||||||||| ||| |||||
seq2  TACCTCCTAAGTTATTTATC-ACATAACTTTTCATCAGAAGGTGAATTTA  1146

seq1  GTGCAG-AATACATAGAGCTGTATTTGTTTTTGTCTGTC  1178
      |||||| |||||||||||   ||||   | |||||||||
seq2  GTGCAGAAATACATAGAGGCCTATT--GTCTTGTCTGTC  1183


seq1: chr18_51659140_51660254
seq2: B6Ng01-226C06.g_66_1178 (reverse)

seq1  GCACATCCATTAACAGATGTATG-TTTATCTAAGCACTATAATTCAG-AG  48
      ||||||||||||||||||||||| |||||   |||||||| | |||| ||
seq2  GCACATCCATTAACAGATGTATGTTTTATTCTAGCACTATTAATCAGAAG  50

seq1  ACCAATTATTATTTCTCCAGTAAGCATACATGAAAAGAAACCATAGATAG  98
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAA-TATTATTTCTCCAGTAAGCATACATGAAAAGAAACCATAGATAG  99

seq1  TTTTTCCGCACATCTAGTGGTAGCTAAAGTATACTCAGGCCACAGTGAAT  148
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTT--CGCACATCTAGTGGTAGCTAAAGTATACTCAGGCCACAGTGAAT  147

seq1  TTATTTTCTCTCTAGTTATGACTTTATTAGAAGTTTCTGAAGATTAATAT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTA-TTTCTCTCTAGTTATGACTTTATTAGAAGTTTCTGAAGATTAATAT  196

seq1  TGCTGAATAAATACCATACATGGTTGAGACATTTCAGGTTTTCTGAGATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATAAATACCATACATGGTTGAGACATTTCAGGTTTTCTGAGATG  246

seq1  AGATGAATATTGGCCCACTGGAAAGTTACAAAGGCAATGTCAGATATCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATATTGGCCCACTGGAAAGTTACAAAGGCAATGTCAGATATCCC  296

seq1  GAGTACGCAAGTAGTTTATGATAAGGATAATAGTTTTCAAATTGCTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGCAAGTAGTTTATGATAAGGATAATAGTTTTCAAATTGCTTTGG  346

seq1  AAAGTTGCATATTTTGTGGTTTAAGTAGCATATTTCTGGACCTGGGTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCATATTTTGTGGTTTAAGTAGCATATTTCTGGACCTGGGTTTG  396

seq1  TTCTAATTTTAAAGGAGTGAAATTGTTATGTTTTTATTTTCACAGGTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTTAAAGGAGTGAAATTGTTATGTTTTTATTTTCACAGGTGTA  446

seq1  TTTAATACAAAATGAATCAAGGACCAACAATGTTTTTCATTGAGAATAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACAAAATGAATCAAGGACCAACAATGTTTTTCATTGAGAATAGA  496

seq1  TTAAAGTTTTAAGCATGACTTCACTCTCTAAAAATTTCCAGTAATACAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTTAAGCATGACTTCACTCTCTAAAAATTTCCAGTAATACAAT  546

seq1  TATAATGGAATCATCCCTGCCTTATAACAGCTTGTGTAAAACACCATTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGAATCATCCCTGCCTTATAACAGCTTGTGTAAAACACCATTTT  596

seq1  TAGGACTGATCTACTTTGATGGGCAATATATACCATTAAAATTTTCATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGATCTACTTTGATGGGCAATATATACCATTAAAATTTTCATTT  646

seq1  TAGAAATATGTATTATATTTTTTAATACGAGGTTTCCACCATATGCATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATGTATTATATTTTTTAATACGAGGTTTCCACCATATGCATTT  696

seq1  TTGGTTGATGAAGTTTTGTTTAAAATTTAAAAATTCTTCTTGGATTCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGATGAAGTTTTGTTTAAAATTTAAAAATTCTTCTTGGATTCATA  746

seq1  AGTACAGTATATCCAACAATATGAATAAACTCTAAGAAAATTTGCCTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTATATCCAACAATATGAATAAACTCTAAGAAAATTTGCCTTTA  796

seq1  AAAAATGAAAACCATATGCAAAACTGTTTTTACATGACATAAAGTCAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAACCATATGCAAAACTGTTTTTACATGACATAAAGTCAACC  846

seq1  AAAGGCCACAATAACGATAACTACATATTTCCTATATTGGTAGTCAATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACAATAACGATAACTACATATTTCCTATATTGGTAGTCAATAA  896

seq1  TAGTAATACTAATAGAAAACTACAAGCAAGTAGATTTATAGATTATACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATACTAATAGAAAACTACAAGCAAGTAGATTTATAGATTATACAC  946

seq1  AAATACATTCTGCAAGATGAACTTTTTCTGACTTAGTATAAGGAAACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTCTGCAAGATGAACTTTTTCTGACTTAGTATAAGGAAACACA  996

seq1  AACTTCTTTCCAGAACGAACTTCATTTCCCATCAGCTTAACCTGCTACGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTCCAGAACGAACTTCATTTCCCATCAGCTTAACCTGCTACGC  1046

seq1  CCTAAGGTCAAAATACATTGAATTATGTTGAGAAAGAGTAGGCGTTTCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTCAAAATACATTGAATTATGTTGAGAAAGAGTAGGCGTTTCCA  1096

seq1  GGAACCTAGTGGAATTC  1115
      |||||||||||||||||
seq2  GGAACCTAGTGGAATTC  1113


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