BAC Information

Click to search

BAC

Clone NameB6Ng01-226E01
Chromosome18 (Build37)
Map Location 26,020,987 - 26,021,498
singlet/doubletsinglet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263
Downstream geneLOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E01.bB6Ng01-226E01.g
ACCGA040240GA040241
length507489
definitionB6Ng01-226E01.b B6Ng01-226E01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ttcctatatctttaaacatcgccttgaggaatgaacataacccagttccc
aaacccaaaggacagaactccagctgctcagatcttttcattgtccttaa
ggatgtttgtcctgaggtttctgtttgtgatggcaccccaagtcacacct
gaatccaggctctgggggaatggagaggctttcatgacaaagtagggacc
ataattgtgctgtttatgtctccacatgctcaggtatatagcatagcact
caccatggccaggaaaagacaatcctactgtactgccatggtgagacacc
acacatggaaatggcattggtaacatgagctgatagcacagggcagggaa
gaggggattgtgactgcattgccattaaattgtctctctttgggtcttgt
ttattccacaggagactctcagaaatcctcttctcttctcttctcttctc
ttctcttctcttatcttatcttctcttctcttctcttctcttctccggat
ccctctc

cagagacaggcccaaagtggattccagctcaagaggaggtcccaaggcct
gacactattactgaggctatggagcgctcacaaaaggggacctaacatga
ctgccctccaaaagacccaacaagcagctgaaatagtcagatgtagatat
ttgcacccaaccaatggacagaagcagctgaccctgttgttgaattgggg
gaaacttaaagaagctgaggaggagggctaccctgtaggagaaccagcag
tctcaattaatctggacccccgagatctctcaaacactggaccaccaaac
aggcagtataaacaagctgatatgaggccctcaacacacatacagtagag
gactgctgggtctgtgttcattcagagatgaaacacctaaccctcaagag
actggaggccccagggagtttagaggtcaaatggggtggcaggcggggac
atccacgtggagacagggagtggggaggaggtatgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26020987_26021498
seq2: B6Ng01-226E01.b_45_557

seq1  GAATTCTTCCTATATCTTTAAACATCGCCTTGAGGAATGAACATAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTATATCTTTAAACATCGCCTTGAGGAATGAACATAACCCA  50

seq1  GTTCCCAAACCCAAAGGACAGAACTCCAGCTGCTCAGATCTTTTCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAAACCCAAAGGACAGAACTCCAGCTGCTCAGATCTTTTCATTGT  100

seq1  CCTTAAGGATGTTTGTCCTGAGGTTTCTGTTTGTGATGGCACCCCAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGATGTTTGTCCTGAGGTTTCTGTTTGTGATGGCACCCCAAGTC  150

seq1  ACACCTGAATCCAGGCTCTGGGGGAATGGAGAGGCTTTCATGACAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAATCCAGGCTCTGGGGGAATGGAGAGGCTTTCATGACAAAGTA  200

seq1  GGGACCATAATTGTGCTGTTTATGTCTCCACATGCTCAGGTATATAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCATAATTGTGCTGTTTATGTCTCCACATGCTCAGGTATATAGCAT  250

seq1  AGCACTCACCATGGCCAGGAAAAGACAATCCTACTGTACTGCCATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACCATGGCCAGGAAAAGACAATCCTACTGTACTGCCATGGTGA  300

seq1  GACACCACACATGGAAATGGCATTGGTAACATGAGCTGATAGCACAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACACATGGAAATGGCATTGGTAACATGAGCTGATAGCACAGGGC  350

seq1  AGGGAAGAGGGGATTGTGACTGCATTGCCATTAAATTGTCTCTCTTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGGGGATTGTGACTGCATTGCCATTAAATTGTCTCTCTTTGGG  400

seq1  TCTTGTTTATTCCACAGGAGACTCTCAGAAATCCTCTTCTCTTCTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTATTCCACAGGAGACTCTCAGAAATCCTCTTCTCTTCTCTTCT  450

seq1  CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT  500
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  CTTCTCTTCTCTTCTCTTATCTTATCTTCTCTTCTCTTCTCTTCTCTTCT  500

seq1  -CTTCTCCCTCTC  512
       |   ||||||||
seq2  CCGGATCCCTCTC  513


| Home | SequenceCutter | Blast | Download |