BAC Information

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BAC

Clone NameB6Ng01-226M20
Chromosome18 (Build37)
Map Location 63,272,175 - 63,344,695
singlet/doubletdoublet
Overlap gene9030411M15Rik
Upstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226M20.bB6Ng01-226M20.g
ACCGA040638GA040639
length1,0531,168
definitionB6Ng01-226M20.b B6Ng01-226M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,343,643 - 63,344,695)(63,272,175 - 63,273,316)
sequence
gaattcttcaccaactgcataatgagctgccaaaatattctctgtgccaa
aggatctgggtatgtctgtttcatttattgagaaattcttgttttatcat
ggctaagtgctcaccaaggacataaaaacccaaacctctaatgtagttgg
ggcttaagggcagaaaccatattttaatgtatccggacccatttctagca
catgcagatggtgcacgagtaccaacagcagaagtggatgagcctgcgat
gtgaaggacctcgagatactgcagaactgacagaaggccttctactgtct
ccatcatgcatggatcactggcgccacctcaatttttccaaactgtacca
gatggcttgagccaaagaccatgcatgaccttatcttgcctgtttgatta
aatttacattttatggaaatcacttagggcctatttcttactgaaagcta
tgtgttcaccatcacttgcattttaattttaccttgatggtaaattacat
caattaggaaaaaggattttcttgcaattagaagaaaaataagcctgaga
gtacattgggaagatacagaaaaaccagtgaagatagagggaaattaccg
tactttggttttcattggaagcaaaaattgggaagagtagcatcaagatg
catcttgttctatcaacccccagtttgccctgactatcattatcaccctc
atacaggaatcatcattcttataattaggtccaggcagtggccagctgga
gcacttgatttctactagctggcatgtattctacaccactgtcttactgg
taggagttttggagtaggtcatcttcttcaagaattcctgtgaaaaggat
ccttccattgtcttgcatgacatccacagaacaaatttatttatatgcag
cccaattctctggattggaggccaagaaaaatccctggtctcatgtaatt
aagtcccactcacggagcaaattaagaacttcatcagtgatctcagtgat
tgtcattccagaaaatgcatctgactgtcacctcaatcagatgacattcc
tcc
gaattcctcccatatgagagtactggagagttgtatcttctgatagaggt
aacctgtgagtgacagcactttgaggagttttcatcaggaggcacatctg
ggcagatgagccggggtggggcgggccttccagctgctctaatgaatgag
attgtcaaagtctgtcatataaaggatgaatgacattcatcttttaatac
tgattcaaaaggcctgttctgtgtacccatctgctgtttagcctactcac
aaagtaaatggcccaggtacaccagtcatcagaactggggatgcttggac
acaggtcaaagtggcttccagaaagaggctgtttcacattatacgatttt
gattttcttgtgatatttagtttcctgtatgtctagtgaagaaaaaaaat
aagttcatccaatattgattttttaaaaaattgtcttaatgtcatcaaca
tgtatggagcacatgcttggattttgtgtataaaatagtaagttgtaatg
tttaaccttctgaaagaaaaaccattaaggtggctcaaggagataaatag
accatgaaatggctgcaaatttgtcacaatggaaggaataaaaagcaagg
gtcacaatttctgctgctaaaaattgcttttctagcataaagtattatcc
acggtaaattattctctgtgatagcatgtgcaaagaagctgatttttaca
aacagttaacctgcccaaaaactctccaattgctctgagtgttctacgtt
gcctttttctgttttacattgcacaatcctatttatttatctaattactg
atttcagaagtagtactgactgaagtagtacaattgatgctgtggaggac
tttactagcaaacctacttagaaactcttgtaacatagactaatatccaa
ttactactgcttacatttaacttacaataaatttttttctatatttttct
tttcgtagaaaatactgtcctttcttaagtcaaaactaaaaagcaaggat
cggccatacatggtgcatcgatgccaggcctgatggggctgttgatctca
gctaactggggggggctaaggaggaattgcaaatttctagtttcttgctt
gggcctcgagaagtggtcaggtcctaactttggccaattgtaggacccag
tctccacaaaataaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63343643_63344695
seq2: B6Ng01-226M20.b_42_1094 (reverse)

seq1  GGAGGAATGTCATACTGATTTAAGTGACATTCAGATGCATTTTCTGGAAT  50
      ||||||||||||| |||||| | |||||| ||||||||||||||||||||
seq2  GGAGGAATGTCAT-CTGATTGAGGTGACAGTCAGATGCATTTTCTGGAAT  49

seq1  GAC-ATCACTGGGA-CACTGCTG-AGTTC-TAATTTGCTCCTTGAGTGGG  96
      ||| ||||||| || ||||| || ||||| ||||||||||| ||||||||
seq2  GACAATCACTGAGATCACTGATGAAGTTCTTAATTTGCTCCGTGAGTGGG  99

seq1  ACTTAAACTAAATGAGGCCAGGGATTTCTCTTGGCCTCCAACCCAGAGAA  146
      |||| || || ||||| |||||||||| ||||||||||||| ||||||||
seq2  ACTT-AATTACATGAGACCAGGGATTTTTCTTGGCCTCCAATCCAGAGAA  148

seq1  TTGGGCTGCATATAAATAACTTTTGTTCTGTGGATGTCATGCAAGACAAT  196
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTGGGCTGCATATAAATAA-ATTTGTTCTGTGGATGTCATGCAAGACAAT  197

seq1  GG-AGGATCCTTTTCACAGGAATTCTTTGAAGAAGATGACCTACTCCAAA  245
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGGATCCTTTTCACAGGAATTC-TTGAAGAAGATGACCTACTCCAAA  246

seq1  ACTCCTACCAGTAAGACAGTGGTGTAGAATACATGCCAGCTAGTAGAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACCAGTAAGACAGTGGTGTAGAATACATGCCAGCTAGTAGAAAT  296

seq1  CAAGTGCTCCAGCTGGCCACTGCCTGGACCTAATTATAAGAATGATGATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTCCAGCTGGCCACTGCCTGGACCTAATTATAAGAATGATGATT  346

seq1  CCTGTCTGAGGGTGAAAATGATAGTCAGGGCAAACTGGGGGTTGATAGAA  395
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAGGGTGATAATGATAGTCAGGGCAAACTGGGGGTTGATAGAA  396

seq1  CAAGATGCATCTTGATGCTACTCTTCCCAATTTCTGCTTCCAATGAAAAC  445
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAGATGCATCTTGATGCTACTCTTCCCAATTTTTGCTTCCAATGAAAAC  446

seq1  CAAAGTACGGTAATTTCCCTCTATCTTCACTGGTTTTTCTGTATCTTCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACGGTAATTTCCCTCTATCTTCACTGGTTTTTCTGTATCTTCCC  496

seq1  AATGTACTCTCAGGCTTATTTTTCTTCTAATTCTAAGAAAATCCTTTTTC  545
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  AATGTACTCTCAGGCTTATTTTTCTTCTAATTGCAAGAAAATCCTTTTTC  546

seq1  CTAATTGATGTAATTTACCATCAAGGTAAAATTAAAATGCAAGTGATGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGATGTAATTTACCATCAAGGTAAAATTAAAATGCAAGTGATGGT  596

seq1  GAACACATAGCTTTCAGTAAGAAATAGGCCCTAAGTGATTTCCATAAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATAGCTTTCAGTAAGAAATAGGCCCTAAGTGATTTCCATAAAAT  646

seq1  GTAAATTTAATCAAACAGGCAAGATAAGGTCATGCATGGTCTTTGGCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTAATCAAACAGGCAAGATAAGGTCATGCATGGTCTTTGGCTCA  696

seq1  AGCCATCTGGTACAGTTTGGAAAAATCGAGGTGGCGCCACTGATCCATGC  745
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  AGCCATCTGGTACAGTTTGGAAAAATTGAGGTGGCGCCAGTGATCCATGC  746

seq1  ATGATGGAGACAGTAGAAGGCCTTCTGTCAGTTCTGCAGTATCTCGAGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAGACAGTAGAAGGCCTTCTGTCAGTTCTGCAGTATCTCGAGGT  796

seq1  CCTTCACATCGCAGGCTCATCCACTTCTGCTGTTGGTACTCGTGCACCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATCGCAGGCTCATCCACTTCTGCTGTTGGTACTCGTGCACCAT  846

seq1  CTGCATGTGCTAGAAATGGGTCCGGATACATTAAAATATGGTTTCTGCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCTAGAAATGGGTCCGGATACATTAAAATATGGTTTCTGCCC  896

seq1  TTAAGCCCCAACTACATTAGAGGTTTGGGTTTTTATGTCCTTGGTGAGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCCCAACTACATTAGAGGTTTGGGTTTTTATGTCCTTGGTGAGCA  946

seq1  CTTAGCCATGATAAAACAAGAATTTCTCAATAAATGAAACAGACATACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCATGATAAAACAAGAATTTCTCAATAAATGAAACAGACATACCC  996

seq1  AGATCCTTTGGCACAGAGAATATTTTTGGCAGCTCATTATGCAGTTGCTG  1045
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  AGATCCTTTGGCACAGAGAATA-TTTTGGCAGCTCATTATGCAGTTGGTG  1045

seq1  AAGAATTC  1053
      ||||||||
seq2  AAGAATTC  1053

seq1: chr18_63272175_63273316
seq2: B6Ng01-226M20.g_66_1233

seq1  GAATTCCTCCCATATGAGAATACTGGAGAGTTGTATCTTCTGATAGAGGT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCATATGAGAGTACTGGAGAGTTGTATCTTCTGATAGAGGT  50

seq1  AACCTGTGAGTGACAGCACTTTGAGGAGTTTTCATCAGGAGGCACATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGAGTGACAGCACTTTGAGGAGTTTTCATCAGGAGGCACATCTG  100

seq1  GGCAGATGAGCCGGGGTGGGGCGGGCCTTCCAGCTGCTCTAATGAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGAGCCGGGGTGGGGCGGGCCTTCCAGCTGCTCTAATGAATGAG  150

seq1  ATTGTCAAAGTCTGTCATATAAAGGATGAATGACATTCATCTTTTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAAAGTCTGTCATATAAAGGATGAATGACATTCATCTTTTAATAC  200

seq1  TGATTCAAAAGGCCTGTTCTGTGTACCCATCTGCTGTTTAGCCTACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAAAGGCCTGTTCTGTGTACCCATCTGCTGTTTAGCCTACTCAC  250

seq1  AAAGTAAATGGCCCAGGTACACCAGTCATCAGAACTGGGGATGCTTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGGCCCAGGTACACCAGTCATCAGAACTGGGGATGCTTGGAC  300

seq1  ACAGGTCAAAGTGGCTTCCAGAAAGAGGCTGTTTCACATTATACGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAAAGTGGCTTCCAGAAAGAGGCTGTTTCACATTATACGATTTT  350

seq1  GATTTTCTTGTGATATTTAGTTTCCTGTATGTCTAGTGAAGAAAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTGTGATATTTAGTTTCCTGTATGTCTAGTGAAGAAAAAAAAT  400

seq1  AAGTTCATCCAATATTGATTTTTTAAAAAATTGTCTTAATGTCATCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATCCAATATTGATTTTTTAAAAAATTGTCTTAATGTCATCAACA  450

seq1  TGTATGGAGCACATGCTTGGATTTTGTGTATAAAATAGTAAGTTGTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAGCACATGCTTGGATTTTGTGTATAAAATAGTAAGTTGTAATG  500

seq1  TTTAACCTTCTGAAAGAAAAACCATTAAGGTGGCTCAAGGAGATAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTCTGAAAGAAAAACCATTAAGGTGGCTCAAGGAGATAAATAG  550

seq1  ACCATGAAATGGCTGCAAATTTGTCACAATGGAAGGAATAAAAAGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAAATGGCTGCAAATTTGTCACAATGGAAGGAATAAAAAGCAAGG  600

seq1  GTCACAATTTCTGCTGCTAAAAATTGCTTTTCTAGCATAAAGTATTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATTTCTGCTGCTAAAAATTGCTTTTCTAGCATAAAGTATTATCC  650

seq1  ACGGTAAATTATTCTCTGTGATAGCATGTGCAAAGAAGCTGATTTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAAATTATTCTCTGTGATAGCATGTGCAAAGAAGCTGATTTTTACA  700

seq1  AACAGTTAACCTGCCCAAAAACTCTCCAATTGCTCTGAGTGTTCTACGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAACCTGCCCAAAAACTCTCCAATTGCTCTGAGTGTTCTACGTT  750

seq1  GCC-TTTTCTGTTTTACATTGCACAATCCTATTTATTTATCTAATTACTG  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTCTGTTTTACATTGCACAATCCTATTTATTTATCTAATTACTG  800

seq1  A-TTCAGAAGTAGTACTGACTGAAGTAGTACAATTGATGCTGTGGAGGAC  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAGTAGTACTGACTGAAGTAGTACAATTGATGCTGTGGAGGAC  850

seq1  -TTACTAGCAAACCTACTTAGAAACTCTTGTAACATAGACT-ATATCCAA  896
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTACTAGCAAACCTACTTAGAAACTCTTGTAACATAGACTAATATCCAA  900

seq1  TTACTACTGC-TACATTTAACTTACAATAA--TTTTTTCTATAATTTTC-  942
      |||||||||| |||||||||||||||||||  ||||||||||| ||||| 
seq2  TTACTACTGCTTACATTTAACTTACAATAAATTTTTTTCTATATTTTTCT  950

seq1  TTTCGTAG-AAATACTGTCCTTTC-TAAGTCAAAACT-AAAAGC-AGGA-  987
      |||||||| ||||||||||||||| |||||||||||| |||||| |||| 
seq2  TTTCGTAGAAAATACTGTCCTTTCTTAAGTCAAAACTAAAAAGCAAGGAT  1000

seq1  CGG-CATACAT-GTG-ATCGATGCCAGGCTTGAT-GGGCTGTTGATCCCA  1033
      ||| ||||||| ||| ||||||||||||| |||| |||||||||||| ||
seq2  CGGCCATACATGGTGCATCGATGCCAGGCCTGATGGGGCTGTTGATCTCA  1050

seq1  GCTACCTGGGGGGGCTAAAGGAGG-ATTGCAAA-TTCTAG--TCCTGCTT  1079
      |||| |||||||||   ||||||| |||||||| ||||||  || |||||
seq2  GCTAACTGGGGGGGGCTAAGGAGGAATTGCAAATTTCTAGTTTCTTGCTT  1100

seq1  GGG-CTCCAAGAGTGAGTTCAGCCCTAACTT--GGCAATGGTAGGACCCA  1126
      ||| ||| |  |||| ||   | ||||||||  | |||| ||||||||||
seq2  GGGCCTCGAGAAGTG-GTCAGGTCCTAACTTTGGCCAATTGTAGGACCCA  1149

seq1  GT---CACAAAATAAAAGG  1142
      ||   ||||||||||||||
seq2  GTCTCCACAAAATAAAAGG  1168