BAC Information

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BAC

Clone NameB6Ng01-226O20
Chromosome18 (Build37)
Map Location 30,595,098 - 30,675,781
singlet/doubletdoublet
Overlap geneEG666111, EG666114
Upstream gene4930578E11Rik, LOC666073, Pik3c3, LOC666094, LOC666100
Downstream geneLOC433168, Rit2, EG666130, Syt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226O20.bB6Ng01-226O20.g
ACCGA040730GA040731
length1,1671,143
definitionB6Ng01-226O20.b B6Ng01-226O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,595,098 - 30,596,276)(30,674,624 - 30,675,781)
sequence
gaattctattgacagagaaacagtgctcaagataaaggtctctggaggga
aagtaacacatctattggtacctgttttgcaaaactgtagccaaatgcct
taggagaggaaggatttatctttgattactctttcagagaggtcagtcca
tcatgacagagcagactagtttgcatcgtgacaggcagggaacagagaac
agggctacaggaataggccagggaaagaacaaaactcaaactctgtcatc
cctacttcagtgactctcccatctatcccaccccccgatattctcaacat
attgcgactctattaagtaattaaccacccaattacatcgaaagttttaa
gtactgtgtgggttccatttcagacacactgaatcatgccttactatttc
cttggatgtttctttcaagttgacaatcaaaaataagcttccaagccatc
cagatggtatataatgtaacctgtgttcagagaatctttagccatatcat
taacaaactcaactgtaatgcaataaaaccataacaaaacacactcccct
ggactgctttgttaccctgcaaaggattcttctcagccctgctcttaaag
caaacaatgcaggcaagagacacaggcagtcacagatattcaacaaagct
gaggaaatgattactctaaacacagacataagaaggtgtctccaatggtg
gggaaaccagccttttagtttctacatgtggatttaaaagtttttaatga
aagtttatgaactggctgtcatattcatggattatggtgacatttttctc
caccaaaccattatgaactggatttcccctttagagtatttcttccaatc
gttctcataaaaagctcctagcggtaggggaggcagcacaaactcctatt
gtaagtgacattataaaggaaggcaggtctttgaagattgctagttgtta
gttgcaagtaggaaagtgttgtggtatatcacactggggaacactaagcg
taacattcaactgcagaggggcatactgactgtcgggacagagtgacaaa
gcacagctctgctttctggatcctctctcatagcgcccggtacatctggg
tctcatattggtctctgctctgaggacgcacataatcatcctcagcctta
acactgtgaactcttac

gaattcagaatcgagtagtgatgacagtttgaatatcagtgtcaggcatt
tttctgtaattataagaattaaggaaaatatttaatgataattattctca
aagccatgcaataaaaataagatgcttaaaaactatttaagttgagagta
gttagattgcatcagtaagtagtacaagcataataaatctacataagcac
atacgcatacacacaaaagacacatttgaaccttaaagacaagaatactc
aattaccaaaggtttcagagtcatggtctaagcacttaagaacatctaga
atatgcacaaaggtggattatgtcagacatttccagaaagacagaaacta
gatgtttgtaggaggcaggggagagtgcaagatgatttttaaatacaaga
aatcacatgtgtaaacaaaacaaaaaacaaacaaacaaacaaaaaacatg
tctgaaaatgtaaaattagagccatcagtgtccaagatagaaagggatat
gtgtaggatggaaaagcgagagacaagaacaaagtgaagcagaaaatggg
gtttgggatttgaaggaatcatttaaacagaatttgtgatgagagtgtac
tttgatagatttggagaagaacatgttagacccactctccaggtataaac
ctcattaggagtgactgttaggtatgtcattgactagagtaagaatgaaa
actctatcatcaagtatggcccactggcctcagtgacagaaatcccccat
ctaacatagcttaagcattatttgtacttcctgaccacaacattagccat
ctaggtggactcatgaccccatccagaccttagtatagtgtttttaaaac
tccagtatgaggcaattgtcagctccacaggtttttccacaactgaagag
tttttcagctatgggacgttcatctttaaaatttgggaaaggtgtcagag
agaggtagctgctggttaccacctgaaatgatctcctctttctgctgatc
accaggctgggtttctatcatatttagtacaggattctgtagtacatgcc
tagtacttggtcttgctataaactacttaacagagaataggaaggtttat
ttgctgcatcatgatgcaaagaaccacccctggccaagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30595098_30596276
seq2: B6Ng01-226O20.b_47_1213

seq1  GAATTCTATTGACAGAGAAACAGTGCTCAAGATAAAGGTCTCTGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGACAGAGAAACAGTGCTCAAGATAAAGGTCTCTGGAGGGA  50

seq1  AAGTAACACATCTATTGGTACCTGTTTTGCAAAACTGTAGCCAAATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACACATCTATTGGTACCTGTTTTGCAAAACTGTAGCCAAATGCCT  100

seq1  TAGGAGAGGAAGGATTTATCTTTGATTACTCTTTCAGAGAGGTCAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGGAAGGATTTATCTTTGATTACTCTTTCAGAGAGGTCAGTCCA  150

seq1  TCATGACAGAGCAGACTAGTTTGCATCGTGACAGGCAGGGAACAGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAGAGCAGACTAGTTTGCATCGTGACAGGCAGGGAACAGAGAAC  200

seq1  AGGGCTACAGGAATAGGCCAGGGAAAGAACAAAACTCAAACTCTGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACAGGAATAGGCCAGGGAAAGAACAAAACTCAAACTCTGTCATC  250

seq1  CCTACTTCAGTGACTCTCCCATCTATCCCACCCCCCGATATTCTCAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCAGTGACTCTCCCATCTATCCCACCCCCCGATATTCTCAACAT  300

seq1  ATTGCGACTCTATTAAGTAATTAACCACCCAATTACATCGAAAGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGACTCTATTAAGTAATTAACCACCCAATTACATCGAAAGTTTTAA  350

seq1  GTACTGTGTGGGTTCCATTTCAGACACACTGAATCATGCCTTACTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGTGGGTTCCATTTCAGACACACTGAATCATGCCTTACTATTTC  400

seq1  CTTGGATGTTTCTTTCAAGTTGACAATCAAAAATAAGCTTCCAAGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTTTCTTTCAAGTTGACAATCAAAAATAAGCTTCCAAGCCATC  450

seq1  CAGATGGTATATAATGTAACCTGTGTTCAGAGAATCTTTAGCCATATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTATATAATGTAACCTGTGTTCAGAGAATCTTTAGCCATATCAT  500

seq1  TAACAAACTCAACTGTAATGCAATAAAACCATAACAAAACACACTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACTCAACTGTAATGCAATAAAACCATAACAAAACACACTCCCCT  550

seq1  GGACTGCTTTGTTACCCTGCAAAGGATTCTTCTCAGCCCTGCTCTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTGTTACCCTGCAAAGGATTCTTCTCAGCCCTGCTCTTAAAG  600

seq1  CAAACAATGCAGGCAAGAGACACAGGCAGTCACAGATATTCAACAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATGCAGGCAAGAGACACAGGCAGTCACAGATATTCAACAAAGCT  650

seq1  GAGGAAATGATTACTCTAAACACAGACATAAGAAGGTGTCTCCAATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGATTACTCTAAACACAGACATAAGAAGGTGTCTCCAATGGTG  700

seq1  GGGAAACCAGCCTTTTAGTTTCTACATGTGGATTTAAAAGTTTTTAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAGCCTTTTAGTTTCTACATGTGGATTTAAAAGTTTTTAATGA  750

seq1  AAGTTTATGAACTGGCTGTCATATTCATGGATTATGGTGACATTTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGAACTGGCTGTCATATTCATGGATTATGGTGACATTTTTCTC  800

seq1  CACCAAACCATTATGAACTGGATTTCCCCTTTAGAGTATTTCTTCCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACCATTATGAACTGGATTTCCCCTTTAGAGTATTTCTTCCAATC  850

seq1  GTTCTCATAAAAAGCTCCTAGCGGTAGGGGAGGCAGCACAAACTCCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATAAAAAGCTCCTAGCGGTAGGGGAGGCAGCACAAACTCCTATT  900

seq1  GTAAGTGACATTAT-AAGGAAGGCAGGGTCTTTGAAGATTGCTAGTTGTT  949
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GTAAGTGACATTATAAAGGAAGGCA-GGTCTTTGAAGATTGCTAGTTGTT  949

seq1  AGTTGCAAGTAGGAAAGTGTTGTGGTATATCACACTGGGAACAACTTAAG  999
      ||||||||||||||||||||||||||||||||||||||| |  || ||||
seq2  AGTTGCAAGTAGGAAAGTGTTGTGGTATATCACACTGGGGAACAC-TAAG  998

seq1  CGTAACATTCAACTGCAGAGGGGCATACTGACTGTCGGGGACAGAGTGAC  1049
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGTAACATTCAACTGCAGAGGGGCATACTGACTGTC-GGGACAGAGTGAC  1047

seq1  AAAGCCACAGCTCTGCTTTCCTTGGTTCTCTCTCATAGCGCCCCGTACAT  1099
      |||| |||||||||||||| || | | |||||||||||||||| ||||| 
seq2  AAAG-CACAGCTCTGCTTT-CTGGATCCTCTCTCATAGCGCCCGGTACA-  1094

seq1  TCTTGGTCTCATTATTGTCTCCTTGTTCCTGAGGACGGCAACCTTAATCA  1149
      ||| ||||||||  | |||||  || | |||||||| |||  | ||||||
seq2  TCTGGGTCTCATATTGGTCTC--TGCT-CTGAGGAC-GCA--CATAATCA  1138

seq1  TCTCTCCAGCCTTAACACTGTG-ACTCTTAC  1179
      || || |||||||||||||||| ||||||||
seq2  TC-CT-CAGCCTTAACACTGTGAACTCTTAC  1167


seq1: chr18_30674624_30675781
seq2: B6Ng01-226O20.g_66_1208 (reverse)

seq1  ATATTCTT-GCCAGGGTGTGTCTTTTTCATCATGATGCAAGCCAAAATAA  49
      |||||||| |||||||   ||  ||| ||||||||||| |||  ||||||
seq2  ATATTCTTGGCCAGGGGTGGTTCTTTGCATCATGATGC-AGC--AAATAA  47

seq1  A-CTTCCTATTCTCTTTGGTTAGGTAGTTTATAGCAAAGAACAAAGTAAC  98
      | |||||||||||||   |||| ||||||||||||||   || |||| ||
seq2  ACCTTCCTATTCTCT---GTTAAGTAGTTTATAGCAA--GACCAAGT-AC  91

seq1  TAGCCAATGTACCTACCAGAATCCCTGTACTTAAATATGATAGAAACCCA  148
      ||| | ||||| ||| |||||| ||||||| |||||||||||||||||||
seq2  TAGGC-ATGTA-CTA-CAGAAT-CCTGTAC-TAAATATGATAGAAACCCA  136

seq1  GCCTGGTGATTCAGGCAGAAAGAGGAGATCATTTTCAGGTGGTAACCAGC  198
      ||||||||| ||| ||||||||||||||||| ||||||||||||||||||
seq2  GCCTGGTGA-TCA-GCAGAAAGAGGAGATCA-TTTCAGGTGGTAACCAGC  183

seq1  AGCTACCTCTTCTCTGACACCTT--CCCAATTTTAAAGATGAACGTCCCA  246
      ||||||||| |||||||||||||  || ||||||||||||||||||||||
seq2  AGCTACCTC-TCTCTGACACCTTTCCCAAATTTTAAAGATGAACGTCCCA  232

seq1  TAGCCTGAAAAACTCTTCAGTTGTGGAAAAACCTGTGGAGCTGACAATTG  296
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-CTGAAAAACTCTTCAGTTGTGGAAAAACCTGTGGAGCTGACAATTG  281

seq1  CCTCATACTGGAGTTTTAAAAACACTATACTAAGGTCTGGATGGGGTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACTGGAGTTTTAAAAACACTATACTAAGGTCTGGATGGGGTCAT  331

seq1  GAGTCCACCTAGATGGCTAATGTTGTGGTCAGGAAGTACAAATAATGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACCTAGATGGCTAATGTTGTGGTCAGGAAGTACAAATAATGCTT  381

seq1  AAGCTATGTTAGATGGGGGATTTCTGTCACTGAGGCCAGTGGGCCATACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGTTAGATGGGGGATTTCTGTCACTGAGGCCAGTGGGCCATACT  431

seq1  TGATGATAGAGTTTTCATTCTTACTCTAGTCAATGACATACCTAACAGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAGAGTTTTCATTCTTACTCTAGTCAATGACATACCTAACAGTC  481

seq1  ACTCCTAATGAGGTTTATACCTGGAGAGTGGGTCTAACATGTTCTTCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAATGAGGTTTATACCTGGAGAGTGGGTCTAACATGTTCTTCTCC  531

seq1  AAATCTATCAAAGTACACTCTCATCACAAATTCTGTTTAAATGATTCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATCAAAGTACACTCTCATCACAAATTCTGTTTAAATGATTCCTT  581

seq1  CAAATCCCAAACCCCATTTTCTGCTTCACTTTGTTCTTGTCTCTCGCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAAACCCCATTTTCTGCTTCACTTTGTTCTTGTCTCTCGCTTT  631

seq1  TCCATCCTACACATATCCCTTTCTATCTTGGACACTGATGGCTCTAATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTACACATATCCCTTTCTATCTTGGACACTGATGGCTCTAATTT  681

seq1  TACATTTTCAGACATGTTTTTTGTTTGTTTGTTTGTTTTTTGTTTTGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCAGACATGTTTTTTGTTTGTTTGTTTGTTTTTTGTTTTGTTT  731

seq1  ACACATGTGATTTCTTGTATTTAAAAATCATCTTGCACTCTCCCCTGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGATTTCTTGTATTTAAAAATCATCTTGCACTCTCCCCTGCCT  781

seq1  CCTACAAACATCTAGTTTCTGTCTTTCTGGAAATGTCTGACATAATCCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAACATCTAGTTTCTGTCTTTCTGGAAATGTCTGACATAATCCAC  831

seq1  CTTTGTGCATATTCTAGATGTTCTTAAGTGCTTAGACCATGACTCTGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCATATTCTAGATGTTCTTAAGTGCTTAGACCATGACTCTGAAA  881

seq1  CCTTTGGTAATTGAGTATTCTTGTCTTTAAGGTTCAAATGTGTCTTTTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTAATTGAGTATTCTTGTCTTTAAGGTTCAAATGTGTCTTTTGT  931

seq1  GTGTATGCGTATGTGCTTATGTAGATTTATTATGCTTGTACTACTTACTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCGTATGTGCTTATGTAGATTTATTATGCTTGTACTACTTACTG  981

seq1  ATGCAATCTAACTACTCTCAACTTAAATAGTTTTTAAGCATCTTATTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCTAACTACTCTCAACTTAAATAGTTTTTAAGCATCTTATTTTT  1031

seq1  ATTGCATGGCTTTGAGAATAATTATCATTAAATATTTTCCTTAATTCTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGGCTTTGAGAATAATTATCATTAAATATTTTCCTTAATTCTTA  1081

seq1  TAATTACAGAAAAATGCCTGACACTGATATTCAAACTGTCATCACTACTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAGAAAAATGCCTGACACTGATATTCAAACTGTCATCACTACTC  1131

seq1  GATTCTGAATTC  1158
      ||||||||||||
seq2  GATTCTGAATTC  1143


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