BAC Information

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BAC

Clone NameB6Ng01-227B20
Chromosome18 (Build37)
Map Location 20,935,257 - 21,038,637
singlet/doubletdoublet
Overlap geneD030074E01Rik
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6
Downstream geneRnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227B20.bB6Ng01-227B20.g
ACCGA040869GA040870
length9131,165
definitionB6Ng01-227B20.b B6Ng01-227B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,037,729 - 21,038,637)(20,935,257 - 20,936,402)
sequence
gaattccaggatagacagggctacttttacttatttacttatttttaaag
aatgttatctcaggatattgatagattaattaatcattagtggcttttta
tttttcagttttattttgtgccttttattttaattcatactctttctgct
tggtctcttttcatgttggaaagtttctcatatttgttaaatgcttgttt
cctgtttcacacggaggtgttaagattaagatgtttcttcctgggctcaa
agtacactcatcagtcagtcctttatgttgtggtatgactgtgtaggctt
ggaggtgtctggtttccaggattattatatgtaattattttctttgggac
tatttagtttctctagagatggatttttagaaatctgtttgttaactatg
ggagtggatttagttttaagtagttcgttgtagtggctttctctagctag
ctagtttataggaatagtgtagctattatttgattgtgaaaacttaccta
attgtattgcttgtattctcagagcccttctagcatttctactccagagc
tttgtgtgctttttttgcttttaaaagcaggcagagatactactgtagct
gaatggtttagacaaattttttagaaacctaactattagaattaaacaaa
ggaaagttatttcttgagtttttccccccttcagggcccctcttttcagt
tgatttatttgcctgatggggattgaaccccagaccctgcacatgctaat
aaatacatgcactcgaccactaagctgtatcctcagagcatagcttttat
tttttatgtctttgaaaactaggactgaaatacagggaagttcagaatta
agttcagtaaaattccaccacgacagatcgatactcttgagggttatttt
aaaaagcaaaatt
gaattctttatcatttgaaggatggcagacagatttttatctcacacata
aatctctgtgaggaaccagggctgggatggataatctgacacgggtcagg
gaggggcaagagccagaatagagcctgaaagacccacaacgtgaggactc
ccccacgttctgactcaggagaggcgacaccccaaaatcaccaacgagaa
aacggtcttgttgcaaattgcaagaggatttttattcaagagcgctctcg
ggcccacggtcatacaccacgcaggggtagaggactgtggcgccccgagt
agctgagtaaaggggtatttaaaggagaaaaaccacaactcaaggaggtg
ggaagggcgttgttggaaaataccaaaaataccgggtaagagtcacgagg
aagtacaaagtcataggtgtcacaaggaatacctggtaattgttaactct
caagacagtttctaagagcccctaacaatagcacatttgcattgcagctt
ccggtaatggtcagggtgactttctttgaatgaatactccttgaactcag
gaagtgggtgggtggaggaatgtcactatctgttttatgattagcatacc
ttggagcactgagtttactactctttcaagcccaggtattcgatgtcatt
gcttttaaaatgaataggtcaggggcctcaagatggctcagaagataaag
gtgtctgccaccaaccaagcctttatgacctgagtgtcatctctaagccc
cataaaatggaagaaaagaactctctcctgcaaaccattttctaactttc
acacaagtaccctgtcacgtgcatgaccacacacatacacataagatgaa
ttagttaagtaataaacaaatttgtaatttaggaacacattatgatgttc
agacctaaagctaataagacgttttagtatcgtaacaggtggagttttct
gggtgactgccagggcatttcattttataatgaaagtggttcatcaaaac
atagaacacatttcttaaggatgaaggggctctttcttcaccaggtttaa
aggaaaaatggaaacaattatcaccaccaatatgattacttctgaaggtt
ttagccaagccatagattggaaaagagttgttgtggcgttcagaattaac
tagacatgacaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21037729_21038637
seq2: B6Ng01-227B20.b_46_958 (reverse)

seq1  AAATTTGC-TTTTAAAATAACCCTCAAGAGTATCGATCTGTCGTGGTGGA  49
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCTTTTTAAAATAACCCTCAAGAGTATCGATCTGTCGTGGTGGA  50

seq1  ATTTTACTGAACTTAATTCTGAACTTCCTTGTATTTCAGTCCTAGTTTTC  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTACTGAACTTAATTCTGAACTTCCCTGTATTTCAGTCCTAGTTTTC  100

seq1  AAAGACATAAAAA--TAAAGCTATGCTCTGAGGATACAGCTTAGTGGTCG  147
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  AAAGACATAAAAAATAAAAGCTATGCTCTGAGGATACAGCTTAGTGGTCG  150

seq1  AGTGCATGTATTTATTAGCATGTGCAGGGTCTGGGGTTCAATCCCCATCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGTATTTATTAGCATGTGCAGGGTCTGGGGTTCAATCCCCATCA  200

seq1  GGCAAATAAATCAACTGAAAAGAGGGGCCCTGAAGGGGGG-AAAACTCAA  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCAAATAAATCAACTGAAAAGAGGGGCCCTGAAGGGGGGAAAAACTCAA  250

seq1  GAAATAACTTTCCTTTGTTTAATTCTAATAGTTAGGTTTCTAAAAAATTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACTTTCCTTTGTTTAATTCTAATAGTTAGGTTTCTAAAAAATTT  300

seq1  GTCTAAACCATTCAGCTACAGTAGTATCTCTGCCTGCTTTTAAAAGCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACCATTCAGCTACAGTAGTATCTCTGCCTGCTTTTAAAAGCAAA  350

seq1  AAAAGCACACAAAGCTCTGGAGTAGAAATGCTAGAAGGGCTCTGAGAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACACAAAGCTCTGGAGTAGAAATGCTAGAAGGGCTCTGAGAATA  400

seq1  CAAGCAATACAATTAGGTAAGTTTTCACAATCAAATAATAGCTACACTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATACAATTAGGTAAGTTTTCACAATCAAATAATAGCTACACTAT  450

seq1  TCCTATAAACTAGCTAGCTAGAGAAAGCCACTACAACGAACTACTTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAACTAGCTAGCTAGAGAAAGCCACTACAACGAACTACTTAAAA  500

seq1  CTAAATCCACTCCCATAGTTAACAAACAGATTTCTAAAAATCCATCTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCACTCCCATAGTTAACAAACAGATTTCTAAAAATCCATCTCTA  550

seq1  GAGAAACTAAATAGTCCCAAAGAAAATAATTACATATAATAATCCTGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTAAATAGTCCCAAAGAAAATAATTACATATAATAATCCTGGAA  600

seq1  ACCAGACACCTCCAAGCCTACACAGTCATACCACAACATAAAGGACTGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACCTCCAAGCCTACACAGTCATACCACAACATAAAGGACTGAC  650

seq1  TGATGAGTGTACTTTGAGCCCAGGAAGAAACATCTTAATCTTAACACCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTGTACTTTGAGCCCAGGAAGAAACATCTTAATCTTAACACCTC  700

seq1  CGTGTGAAACAGGAAACAAGCATTTAACAAATATGAGAAACTTTCCAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAAACAGGAAACAAGCATTTAACAAATATGAGAAACTTTCCAACA  750

seq1  TGAAAAGAGACCAAGCAGAAAGAGTATGAATTAAAATAAAAGGCACAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGACCAAGCAGAAAGAGTATGAATTAAAATAAAAGGCACAAAA  800

seq1  TAAAACTGAAAAATAAAAAGCCACTAATGATTAATTAATCTATCAATATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAAAATAAAAAGCCACTAATGATTAATTAATCTATCAATATC  850

seq1  CTGAGATAACATTCTTTAAAAATAAGTAAATAAGTAAAAGTAGCCCTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAACATTCTTTAAAAATAAGTAAATAAGTAAAAGTAGCCCTGTC  900

seq1  TATCCTGGAATTC  909
      |||||||||||||
seq2  TATCCTGGAATTC  913

seq1: chr18_20935257_20936402
seq2: B6Ng01-227B20.g_68_1232

seq1  GAATTCTTTATCATTTGAAGGATGGCAGACAGATTTTTATCTCACACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCATTTGAAGGATGGCAGACAGATTTTTATCTCACACATA  50

seq1  AATCTCTGTGAGGAACCAGGGCTGGGATGGATAATCTGACACGGGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTGAGGAACCAGGGCTGGGATGGATAATCTGACACGGGTCAGG  100

seq1  GAGGGGCAAGAGCCAGAATAGAGCCTGAAAGACCCACAACGTGAGGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAAGAGCCAGAATAGAGCCTGAAAGACCCACAACGTGAGGACTC  150

seq1  CCCCACGTTCTGACTCAGGAGAGGCGACACCCCAAAATCACCAACGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGTTCTGACTCAGGAGAGGCGACACCCCAAAATCACCAACGAGAA  200

seq1  AACGGTCTTGTTGCAAATTGCAAGAGGATTTTTATTCAAGAGCGCTCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTTGTTGCAAATTGCAAGAGGATTTTTATTCAAGAGCGCTCTCG  250

seq1  GGCCCACGGTCATACACCACGCAGGGGTAGAGGACTGTGGCGCCCCGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACGGTCATACACCACGCAGGGGTAGAGGACTGTGGCGCCCCGAGT  300

seq1  AGCTGAGTAAAGGGGTATTTAAAGGAGAAAAACCACAACTCAAGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTAAAGGGGTATTTAAAGGAGAAAAACCACAACTCAAGGAGGTG  350

seq1  GGAAGGGCGTTGTTGGAAAATACCAAAAATACCGGGTAAGAGTCACGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCGTTGTTGGAAAATACCAAAAATACCGGGTAAGAGTCACGAGG  400

seq1  AAGTACAAAGTCATAGGTGTCACAAGGAATACCTGGTAATTGTTAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAAGTCATAGGTGTCACAAGGAATACCTGGTAATTGTTAACTCT  450

seq1  CAAGACAGTTTCTAAGAGCCCCTAACAATAGCACATTTGCATTGCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGTTTCTAAGAGCCCCTAACAATAGCACATTTGCATTGCAGCTT  500

seq1  CCGGTAATGGTCAGGGTGACTTTCTTTGAATGAATACTCCTTGAACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAATGGTCAGGGTGACTTTCTTTGAATGAATACTCCTTGAACTCAG  550

seq1  GAAGTGGGTGGGTGGAGGAATGTCACTATCTGTTTTATGATTAGCATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTGGGTGGAGGAATGTCACTATCTGTTTTATGATTAGCATACC  600

seq1  TTGGAGCACTGAGTTTACTACTCTTTCAAGCCCAGGTATTCGATGTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCACTGAGTTTACTACTCTTTCAAGCCCAGGTATTCGATGTCATT  650

seq1  GCTTTTAAAATGAATAGGTCAGGGGCCTCAAGATGGCTCAGAAGATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAATGAATAGGTCAGGGGCCTCAAGATGGCTCAGAAGATAAAG  700

seq1  GTGTCTGCCACCAACCAAGCC-TTATGACCTGAGTGTCATCTCTAAGCCC  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGTCTGCCACCAACCAAGCCTTTATGACCTGAGTGTCATCTCTAAGCCC  750

seq1  CATAAAATGGAAGAAAAGAACTCTCTCCTGCAAACCATTTTCTAACTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATGGAAGAAAAGAACTCTCTCCTGCAAACCATTTTCTAACTTTC  800

seq1  ACACAAGTACCCTGTCACGTGCATGACCACACACATACACATAAGATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTACCCTGTCACGTGCATGACCACACACATACACATAAGATGAA  850

seq1  TTAGTTAAGTAATAAACAAA-TTGTAATT--AGAACACA-TATGATG-TC  894
      |||||||||||||||||||| ||||||||   ||||||| ||||||| ||
seq2  TTAGTTAAGTAATAAACAAATTTGTAATTTAGGAACACATTATGATGTTC  900

seq1  AGACCTAAAGCTAATAAGACG-TTTAGTA-CGTAACA-GTGGAG-TTTCT  940
      ||||||||||||||||||||| ||||||| ||||||| |||||| |||||
seq2  AGACCTAAAGCTAATAAGACGTTTTAGTATCGTAACAGGTGGAGTTTTCT  950

seq1  -GGTGACTGCCAGGGCA-TTCATTTTATAATGAAAGTG--TCATC-AAAC  985
       |||||||||||||||| ||||||||||||||||||||  ||||| ||||
seq2  GGGTGACTGCCAGGGCATTTCATTTTATAATGAAAGTGGTTCATCAAAAC  1000

seq1  ATAGAACACATTTCTT-AGGATG-AGGGGCTCTT--CTCA-CAGG-TTAA  1029
      |||||||||||||||| |||||| ||||||||||   ||| |||| ||||
seq2  ATAGAACACATTTCTTAAGGATGAAGGGGCTCTTTCTTCACCAGGTTTAA  1050

seq1  AG--AAAATGAAACAAATTATCACCAACAATATTAAATACTTTCTGAAAA  1077
      ||  |||||| ||  ||||||||||| ||||| | | ||| ||||| || 
seq2  AGGAAAAATGGAAACAATTATCACCACCAATA-TGATTAC-TTCTG-AAG  1097

seq1  GTTTTAGCCAAGCAATAAGAATGGAAAAGAGTTG-TGT-GCG-TCAGAAA  1124
      ||||||||||||| || ||| ||||||||||||| ||| ||| ||||  |
seq2  GTTTTAGCCAAGCCAT-AGATTGGAAAAGAGTTGTTGTGGCGTTCAG--A  1144

seq1  ATTAACCAGGCAATGACAAGTC  1146
      |||||| || | ||||||||||
seq2  ATTAACTAGAC-ATGACAAGTC  1165