BAC Information

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BAC

Clone NameB6Ng01-227E15
Chromosome18 (Build37)
Map Location 14,468,442 - 14,560,032
singlet/doubletdoublet
Overlap geneLOC100040391
Upstream geneLOC665379, LOC100040358, Zfp521, LOC100040094, LOC100040103
Downstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E15.bB6Ng01-227E15.g
ACCGA040998GA040999
length1,128817
definitionB6Ng01-227E15.b B6Ng01-227E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,558,905 - 14,560,032)(14,468,442 - 14,469,252)
sequence
gaattcatgcatcttgcatcttgaagatacattattaatgcttggacaaa
tcacatcaggtgaaacccagcaagtccctggcactgcagaaaaggaacaa
aggctggttctacgagagagcaatggatgagacaaattataacagctggg
agtttcttgtaagtaagatgacatagaaaccagaaatgctaaaattgtgt
acacaggacagcaactttgtaattctgcagtaaggcagatgccacatggt
gctgggtgaaagccattctaattgtggcttccatcaagtcaccgtgatgc
aactctttgaatttctcaacaaaagaggctagcttgctggtgaccaaatt
actaccaagcacatgatttccaagatggactaggaagggtccattttatt
ttttaacagagccagtaatcagccttggctgcactgtgggaaaaataaaa
tgtggcttgggagaatatactagaagggtctggggtgaaaaaaacccccg
ggacagaggatcggcagagccttctgtcatcttctccggaaggggatact
tgggtagtgcgccatgagacagggctattttacccttctgcatgtgcact
cacagactggatgattggagatagataaatatcaggtttatttcaaatgg
attagaaaaggccacgagtgcacaatcatttggctgggcagatccatgac
tgtgctgactcccagtggtcactgatgacacatgacctgctagtgagctg
ctgagactcccctgcttttttctgcagggccaaagcacggaggatttgtc
tgcagtggtaggtaacagccacttcaggatgtcagcctactcatatacaa
ccagttcattaaataataatccttatggcaccttgaaagcagtgatatta
tttttaaacgtgaccactggggatatgttgaaaggaaagtcagtgggttc
tttggtgtgtgtatgtgtgtgcacactcatgcacatacagagcattcgtg
gtttcatgcagtagtgtcagattttctatgtgaaggagtaattttcattt
ttcacaagtcacaatcaaacgtgtaatcatctaataatgttttcataatc
cgattaaaaccattctaaattatcttga
gaattcactctgcagtaccaggatatccttgaactcacagagatctgcct
ctactgcctcccaagtgctggtattaaaaagggtgtgtgctattatcacc
caggtacattttttttaaggtgacaaggtttcttcagccctggtgccagg
actatgtctctgctggtcagttcattccttagattcaaggggtgcagctc
ttgaggggagtaactataaagaacatgggttatcattcatcacaggtgaa
tcttggtgggcaagacacagaattcctcactcccacacataagcactccc
ttttcataagtttagcacagaagcacacaatgggccttgccgcgtcagcc
gttaagtaacggttctcaaaacctataagtcatggcatggtatcttcaag
agctgggtaacccagccctaaggatgactcgcaagcagaatgaggtgcat
aattgggcactcagaggggctctgcaaaccaagagtcaggaggtagtgga
tgcagtagtgaggtggcacttgccacgccccccagagaccttagacactt
gctgttttcaagcctctgttttcccagctcaatgatgaggacaccagctt
tcccaccaccgagtgtcccagacaatgagactgaaagggtaaaatgcatg
gtggtgctgggttgattcttaggactaaaaggagcttagggcgagaaagc
actttcagcagtatcatacagttctacgtttgcttacctttccattttgg
gtaatcacatctctgggggtgatctggatgaagattgtatggggaactct
ccactttttctgtgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14558905_14560032
seq2: B6Ng01-227E15.b_46_1173 (reverse)

seq1  TCAAGATAATTTAGATGGTTTTTAATCGGGATTATGAAAACATAATTAGA  50
      |||||||||||||||  | |||||||| ||||||||||||||| ||||||
seq2  TCAAGATAATTTAGAATGGTTTTAATC-GGATTATGAAAACATTATTAGA  49

seq1  TGATTACACGTTTGTTGTTGACTTGTGAAAAATGAAAATTACT-CTCCAC  99
      |||||||||||||| |  ||||||||||||||||||||||||| || |||
seq2  TGATTACACGTTTGATTGTGACTTGTGAAAAATGAAAATTACTCCTTCAC  99

seq1  ATAGAAAATCTGGACACTACTGCATGAAACCACGAATGCTCTGTATGTGC  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATCT-GACACTACTGCATGAAACCACGAATGCTCTGTATGTGC  148

seq1  ATGAGTGTGCACACACATACACACACCAAAGAACCCACTGACTTTCC-TT  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAGTGTGCACACACATACACACACCAAAGAACCCACTGACTTTCCTTT  198

seq1  CAACATATCCCCAGTGGTCACGTTTAAAAATAATATCACTGCTTTCAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATCCCCAGTGGTCACGTTTAAAAATAATATCACTGCTTTCAAGG  248

seq1  TGCCATAAGGATTATTATTTAATGAACTGGTTGTATATGAGTAGGCTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAGGATTATTATTTAATGAACTGGTTGTATATGAGTAGGCTGAC  298

seq1  ATCCTGAAGTGGCTGTTACCTACCACTGCAGACAAATCCTCCGTGCTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGTGGCTGTTACCTACCACTGCAGACAAATCCTCCGTGCTTTG  348

seq1  GCCCTGCAGAAAAAAGCAGGGGAGTCTCAGCAGCTCACTAGCAGGTCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAGAAAAAAGCAGGGGAGTCTCAGCAGCTCACTAGCAGGTCATG  398

seq1  TGTCATCAGTGACCACTGGGAGTCAGCACAGTCATGGATCTGCCCAGCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGTGACCACTGGGAGTCAGCACAGTCATGGATCTGCCCAGCCA  448

seq1  AATGATTGTGCACTCGTGGCCTTTTCTAATCCATTTGAAATAAACCTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGTGCACTCGTGGCCTTTTCTAATCCATTTGAAATAAACCTGAT  498

seq1  ATTTATCTATCTCCAATCATCCAGTCTGTGAGTGCACATGCAGAAGGGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTATCTCCAATCATCCAGTCTGTGAGTGCACATGCAGAAGGGTA  548

seq1  AAATAGCCCTGTCTCATGGCGCACTACCCAAGTATCCCCTTCCGGAGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCCTGTCTCATGGCGCACTACCCAAGTATCCCCTTCCGGAGAAG  598

seq1  ATGACAGAAGGCTCTGCCGATCCTCTGTCCCGGGGGTTTTTTTCACCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAAGGCTCTGCCGATCCTCTGTCCCGGGGGTTTTTTTCACCCCA  648

seq1  GACCCTTCTAGTATATTCTCCCAAGCCACATTTTATTTTTCCCACAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCTAGTATATTCTCCCAAGCCACATTTTATTTTTCCCACAGTGC  698

seq1  AGCCAAGGCTGATTACTGGCTCTGTTAAAAAATAAAATGGACCCTTCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCTGATTACTGGCTCTGTTAAAAAATAAAATGGACCCTTCCTA  748

seq1  GTCCATCTTGGAAATCATGTGCTTGGTAGTAATTTGGTCACCAGCAAGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTTGGAAATCATGTGCTTGGTAGTAATTTGGTCACCAGCAAGCT  798

seq1  AGCCTCTTTTGTTGAGAAATTCAAAGAGTTGCATCACGGTGACTTGATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTTTGTTGAGAAATTCAAAGAGTTGCATCACGGTGACTTGATGG  848

seq1  AAGCCACAATTAGAATGGCTTTCACCCAGCACCATGTGGCATCTGCCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAATTAGAATGGCTTTCACCCAGCACCATGTGGCATCTGCCTTA  898

seq1  CTGCAGAATTACAAAGTTGCTGTCCTGTGTACACAATTTTAGCATTTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATTACAAAGTTGCTGTCCTGTGTACACAATTTTAGCATTTCTG  948

seq1  GTTTCTATGTCATCTTACTTACAAGAAACTCCCAGCTGTTATAATTTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATGTCATCTTACTTACAAGAAACTCCCAGCTGTTATAATTTGTC  998

seq1  TCATCCATTGCTCTCTCGTAGAACCAGCCTTTGTTCCTTTTCTGCAGTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATTGCTCTCTCGTAGAACCAGCCTTTGTTCCTTTTCTGCAGTGC  1048

seq1  CAGGGACTTGCTGGGTTTCACCTGATGTGATTTGTCCAAGCATTAATAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTTGCTGGGTTTCACCTGATGTGATTTGTCCAAGCATTAATAAT  1098

seq1  GTATCTTCAAGATGCAAGATGCATGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  GTATCTTCAAGATGCAAGATGCATGAATTC  1128

seq1: chr18_14468442_14469252
seq2: B6Ng01-227E15.g_71_886

seq1  GAATTCACTCTGCAGTACCAGGATATCCTTGAACTCACAGAGATCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCAGTACCAGGATATCCTTGAACTCACAGAGATCTGCCT  50

seq1  CTACTGCCTCCCAAGTGCTGGTATTAAAAAGGGTGTGTGCTATTATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCCTCCCAAGTGCTGGTATTAAAAAGGGTGTGTGCTATTATCACC  100

seq1  CAGGTACATTTTTTTTAAGGTGACAAGGTTTCTTCAGCCCTGGTGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACATTTTTTTTAAGGTGACAAGGTTTCTTCAGCCCTGGTGCCAGG  150

seq1  ACTATGTCTCTGCTGGTCAGTTCATTCCTTAGATTCAAGGGGTGCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTCTGCTGGTCAGTTCATTCCTTAGATTCAAGGGGTGCAGCTC  200

seq1  TTGAGGGGAGTAACTATAAAGAACATGGGTTATCATTCATCACAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAGTAACTATAAAGAACATGGGTTATCATTCATCACAGGTGAA  250

seq1  TCTTGGTGGGCAAGACACAGAATTCCTCACTCCCACACATAAGCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGGGCAAGACACAGAATTCCTCACTCCCACACATAAGCACTCCC  300

seq1  TTTTCATAAGTTTAGCACAGAAGCACACAATGGGCCTTGCCGCGTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAGTTTAGCACAGAAGCACACAATGGGCCTTGCCGCGTCAGCC  350

seq1  GTTAAGTAACGGTTCTCAAAACCTAGAAGTCATGGCATGGTATCTTCAAG  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTAAGTAACGGTTCTCAAAACCTATAAGTCATGGCATGGTATCTTCAAG  400

seq1  AGCTGGGTAACCCAGCCCTAAGGATGACTCGCAAGCAGAATGAGGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTAACCCAGCCCTAAGGATGACTCGCAAGCAGAATGAGGTGCAT  450

seq1  AATTGGGCACTCAGAGGGGCTCTGCAAACCAAGAGTCAGGAGGTAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGCACTCAGAGGGGCTCTGCAAACCAAGAGTCAGGAGGTAGTGGA  500

seq1  TGCAGTAGTGAGGTGGCACTTGCCACGCCCCCCAGAGACCTTAGACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGTGAGGTGGCACTTGCCACGCCCCCCAGAGACCTTAGACACTT  550

seq1  GCTGTTTTCAAGCCTCTGTTTTCCCAGCTCAATGATGAGGACACCAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCAAGCCTCTGTTTTCCCAGCTCAATGATGAGGACACCAGCTT  600

seq1  TCCCACCACCGAGTGTCCCAGACAATGAGACTGAAAGGGTAAAATGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCACCGAGTGTCCCAGACAATGAGACTGAAAGGGTAAAATGCATG  650

seq1  GTGGTGCTGGGTTGATTCTTAGGACTAAAAGGAGCTTAGGGCGAGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTGGGTTGATTCTTAGGACTAAAAGGAGCTTAGGGCGAGAAAGC  700

seq1  AC-TTCAGCAGTATCATACAG-TCTACGTTTGCTTACC-TTCCAGTTTGG  747
      || |||||||||||||||||| |||||||||||||||| ||||| |||||
seq2  ACTTTCAGCAGTATCATACAGTTCTACGTTTGCTTACCTTTCCATTTTGG  750

seq1  GTAATCACATCTCT-GGGGTGATCTGGATGAAGAATGTAT-GGGAACTCT  795
      |||||||||||||| ||||||||||||||||||| ||||| |||||||||
seq2  GTAATCACATCTCTGGGGGTGATCTGGATGAAGATTGTATGGGGAACTCT  800

seq1  GCAACTTTTCTGTGAC  811
       ||  |||||||||||
seq2  CCACTTTTTCTGTGAC  816