BAC Information

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BAC

Clone NameB6Ng01-227I22
Chromosome18 (Build37)
Map Location 88,964,032 - 88,965,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227I22.bB6Ng01-227I22.g
ACCGA041199GA041200
length1,1051,162
definitionB6Ng01-227I22.b B6Ng01-227I22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaaggttgtattaaagacctgatgccagcaagatgaagaggaa
aaagaaagcagaggccagagcttgccagagtgaccaagactgcttagtca
gtcaacaggttctccagcgtgggagtgaagattaaaaaggaaaaagacag
ttagcattgtaaaagacattgtagcatgatcccagtcaattctgacactg
aagacaaatttaattttcccaatctgcttcttataccattttaattacat
gcaagtattaagggggagcagtacaataaggaactaaaagaacaatagtt
aagaaacaagcaagacaataaacacaaagccccatgatcactccggtgat
agttgtttctaaggatgatcaagatatctgagcctacttcttgttttacc
ctaaaatcagattcttacttccttgaccttggccaatgtcaggtctcttc
ctggacttacttctttgtcatgctataatgtcagattcctgccaagtaca
tatttccttgtccttggccaatgtcagattcctgccaaatggcaccccaa
aaggctctccataccagaagttcccagagatgggctatcctgctctaaga
ttctatctgggcttactggaatatttgagcatatctgtcagcatgagcct
gaaagtgtaattgggtgctgaagaaaagcaagaagaaagagaaacagatg
cctttcattcactctccacaatctcttgcatttgtcatgtagtttcctga
tttgtagactagggtcacatctcactatgtactcagtcatctgagaccac
tcactgcctgatgggtggcagcttgggttacagatcagagatccaatgcc
ctcttacttgctccatcaacttttattcttcttaatttaggggcgtttct
tagattagaaaaatggaaaagccactgcctaaataaaaacatatactgac
ttgctcttaaatatacattttaatgtaaaggaagcaaatgggcctttgcc
aatgagaaatgaatgggtcagaggttttagttgctatacagttctgctag
ttctggagaagatataacatatcttttcatacctattgcctcaccagtgg
ctcaa
gaattctcacctgatgaatacggaattgctgagaaacacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggttacagc
agttgctggcgaggttgtggagaaagaggaacacttctccactgttggtg
agattggaagcttgtacaaccactctggaaatcagtatggcgttttctca
gaaaattggacatggtactacgggaggatcctcaatacctctcctctgca
tatatccagaagatgttccaactagtaagaaagaaacatgctccactatg
ttcatagaagccttatttataatagccagaaccttgaaagaacccagatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaacagaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcattatcctgagtgaggtaacccaatcacaaaa
aaactcaaatgatatgtactcactgttaagtggatattagcctagaaact
tagaatacccaagatataatttacaatttgcaaaacacatgaaactcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagggatccatcccataatc
agcctccaaacgctgacaccattgtatacactagtaagattgtgaggata
gtctctagtgagactacgcccggagcctagcaaatacataagtggatgct
cacagttagctattggattgatcacaggacccccaatggaggagctagag
aaagtacccaaggagctaaagggatctgcaccctatagtggaacacatat
gactaacaagtacccagagctctgactctagccgcatatgtatcaaagat
gctagtcgcatcactgaagagagcccatgactttattcttatacccatac
aggacgccagctaagtgaagtgtgcttaggggtggggactatacgtgtct
tcttactagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88964032_88965136
seq2: B6Ng01-227I22.b_43_1147 (reverse)

seq1  TTGAGCCACTGGTGAGGC-ATAGGTATGAAAAGATATGTTATATCTTCTC  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGAGCCACTGGTGAGGCAATAGGTATGAAAAGATATGTTATATCTTCTC  50

seq1  CAGAACTAAGCAGAACTGTATAGCAACTAAAAACCTCTGACCCATTCATT  99
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  CAGAACT-AGCAGAACTGTATAGCAACT-AAAACCTCTGACCCATTCATT  98

seq1  TCTCATTGGCAAAGGCCCATTTGCTTCCTTTACATTAAAATGTATATTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGGCAAAGGCCCATTTGCTTCCTTTACATTAAAATGTATATTTA  148

seq1  AGAGCAAGTCAGTATATGTTTTTATTTAGGCAGTGGC-TTTCCATTTTTC  198
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGCAAGTCAGTATATGTTTTTATTTAGGCAGTGGCTTTTCCATTTTTC  198

seq1  TAATCTAAGAAACGCCCCTAAATTAAGAAGAATAAAAGTTGATGGAGCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGAAACGCCCCTAAATTAAGAAGAATAAAAGTTGATGGAGCAA  248

seq1  GTAAGAGGGCATTGGATCTCTGATCTGTAACCCAAGCTGCCACCCATCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGGCATTGGATCTCTGATCTGTAACCCAAGCTGCCACCCATCAG  298

seq1  GCAGTGAGTGGTCTCAGATGACTGAGTACATAGTGAGATGTGACCCTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGTGGTCTCAGATGACTGAGTACATAGTGAGATGTGACCCTAGT  348

seq1  CTACAAATCAGGAAACTACATGACAAATGCAAGAGATTGTGGAGAGTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATCAGGAAACTACATGACAAATGCAAGAGATTGTGGAGAGTGAA  398

seq1  TGAAAGGCATCTGTTTCTCTTTCTTCTTGCTTTTCTTCAGCACCCAATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCATCTGTTTCTCTTTCTTCTTGCTTTTCTTCAGCACCCAATTA  448

seq1  CACTTTCAGGCTCATGCTGACAGATATGCTCAAATATTCCAGTAAGCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGGCTCATGCTGACAGATATGCTCAAATATTCCAGTAAGCCCA  498

seq1  GATAGAATCTTAGAGCAGGATAGCCCATCTCTGGGAACTTCTGGTATGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATCTTAGAGCAGGATAGCCCATCTCTGGGAACTTCTGGTATGGA  548

seq1  GAGCCTTTTGGGGTGCCATTTGGCAGGAATCTGACATTGGCCAAGGACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTTGGGGTGCCATTTGGCAGGAATCTGACATTGGCCAAGGACAA  598

seq1  GGAAATATGTACTTGGCAGGAATCTGACATTATAGCATGACAAAGAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGTACTTGGCAGGAATCTGACATTATAGCATGACAAAGAAGTA  648

seq1  AGTCCAGGAAGAGACCTGACATTGGCCAAGGTCAAGGAAGTAAGAATCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGAAGAGACCTGACATTGGCCAAGGTCAAGGAAGTAAGAATCTG  698

seq1  ATTTTAGGGTAAAACAAGAAGTAGGCTCAGATATCTTGATCATCCTTAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGGTAAAACAAGAAGTAGGCTCAGATATCTTGATCATCCTTAGA  748

seq1  AACAACTATCACCGGAGTGATCATGGGGCTTTGTGTTTATTGTCTTGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTATCACCGGAGTGATCATGGGGCTTTGTGTTTATTGTCTTGCTT  798

seq1  GTTTCTTAACTATTGTTCTTTTAGTTCCTTATTGTACTGCTCCCCCTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAACTATTGTTCTTTTAGTTCCTTATTGTACTGCTCCCCCTTAA  848

seq1  TACTTGCATGTAATTAAAATGGTATAAGAAGCAGATTGGGAAAATTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCATGTAATTAAAATGGTATAAGAAGCAGATTGGGAAAATTAAAT  898

seq1  TTGTCTTCAGTGTCAGAATTGACTGGGATCATGCTACAATGTCTTTTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAGTGTCAGAATTGACTGGGATCATGCTACAATGTCTTTTACA  948

seq1  ATGCTAACTGTCTTTTTCCTTTTTAATCTTCACTCCCACGCTGGAGAACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACTGTCTTTTTCCTTTTTAATCTTCACTCCCACGCTGGAGAACC  998

seq1  TGTTGACTGACTAAGCAGTCTTGGTCACTCTGGCAAGCTCTGGCCTCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGACTAAGCAGTCTTGGTCACTCTGGCAAGCTCTGGCCTCTGC  1048

seq1  TTTCTTTTTCCTCTTCATCTTGCTGGCATCAGGTCTTTAATACAACCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCCTCTTCATCTTGCTGGCATCAGGTCTTTAATACAACCTTT  1098

seq1  TGAATTC  1105
      |||||||
seq2  TGAATTC  1105