BAC Information

Click to search

BAC

Clone NameB6Ng01-227K12
Chromosome18 (Build37)
Map Location 65,927,457 - 66,092,473
singlet/doubletdoublet
Overlap geneSec11c, Grp
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik
Downstream geneRax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852, Mc4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K12.bB6Ng01-227K12.g
ACCGA041271GA041272
length1,152547
definitionB6Ng01-227K12.b B6Ng01-227K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,927,457 - 65,928,603)(66,091,934 - 66,092,473)
sequence
gaattcttccatttacatcttatagcggcgggaaattgcaaatcacgaga
ctagatttctttttttatttcttgttttgaggcatggtttctctctgcga
agctctgactgtcttggagctcattctgtaaagcaccctgccctcacaga
tccaccttcctctgccacccgagtgttggcgttaaaggtgtgcaccacca
cacccatcttagatttcggtttttttccctttttaagatagggtctcata
taccctaggttggcttagaacttgttatgtatcagaaagtaaccttggat
ttctgatcttctaccccataagttctggggacatagacacgtgccactgg
gctccatttatgcaaggctggagatgaaacacaaggcttcctatgggcga
ggcaagcaccctgcccactgggctacccgtccctgctcacagcactgcat
ttttcataattttatttgtgaaaacacaaccgcaaagaagccacatatat
ttaagttgtggaaaaaaaaaagtaaattgctttttggcaacaacaaaagt
ccatacgattaaagacatttggtctgaattgttgcatgaatgtttgttca
caaagtagctacagtatctgaactgacaatcctgttctctaggccgtgct
atgaaagatggaaacacagttcaattaacccatttcttcagttattttat
ccctttccattggtctgccctagatagcgtattctgtcttatgagtgaca
cattagataatacgagtcagctagaaccttcggagactcgtaaacaccaa
cccattgttaaaatgatccatctcaataaaatgagtcaataaatgaagcc
tttaaaaatacattcgtgtcctattggcttgacaaatgattggcatgtta
tacagcaatctaggaatgagctaattttttatgaagatatttggaagtgg
tttcttacttcatctattgttctgtcaggattacctttatggatcactga
cacatttattctatgacagagatcatctaggaagtcatgtccttgactca
agtcgggagggatgagtccatcgatcatgaagcagatgattgagtctagg
ttatctcaaaaccttcatgaaggcatacaggcgaatgtcgagctcaggga
tt
gaattcttctctcagctgctgttaactgtctataaacctgcccctcccct
cgtgtggactctcccacttatcaaccgttagctgtataaatccttaggaa
ggggtcagtccaatgagccctgcccctccatggcagacagatacttcatg
caagtgtcttgcaggtaatcatagatgcttcaagagggcagctgccattc
ctgctgtgcccagaggacagcttacacacacacacacatacacacacaca
cacacacacacacacacacacacacagtgaaaactgggacaatgtctttg
tgtctgacccacttatgaaatggggccaactgtgtcttcctgacagggtt
atcatgacacttgatgaaagacaaatctcttggaggaatagtacatgtgc
gtgcatgcatatgtgtgcgtgtgcatgtatatgagtatgcatatgtgcat
atgcatgtatgtgcatgtgtttatacttgtatgtacatgtgtgtgtgctt
atgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65927457_65928603
seq2: B6Ng01-227K12.b_41_1192

seq1  GAATTCTTCACATTTACATCTTATAGCAGCGGGAAATTGCAAATCAGGAG  50
      ||||||||| ||||||||||||||||| |||||||||||||||||| |||
seq2  GAATTCTTC-CATTTACATCTTATAGCGGCGGGAAATTGCAAATCACGAG  49

seq1  ACTAGATTTCTTTTTTTATTTCTTGTTTTGAGGCATGGTTTCTCTCTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTCTTTTTTTATTTCTTGTTTTGAGGCATGGTTTCTCTCTGCG  99

seq1  AAGCTCTGACTGTCTTGGAGCTCATTCTGTAGAGCAGCCTGCCCTCAGAG  150
      ||||||||||||||||||||||||||||||| |||| |||||||||| ||
seq2  AAGCTCTGACTGTCTTGGAGCTCATTCTGTAAAGCACCCTGCCCTCACAG  149

seq1  ATCCACCTTCCTCTGCCACCCGAGTGTTGGCGTTAAAGGTGTGCACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTTCCTCTGCCACCCGAGTGTTGGCGTTAAAGGTGTGCACCACC  199

seq1  ACACCCATCTTAGATTTCGGTTTTTTTCCCTTTTTAAGATAGGGTCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATCTTAGATTTCGGTTTTTTTCCCTTTTTAAGATAGGGTCTCAT  249

seq1  ATAGCCTAGGTTGGCTTAGAACTTGTTATGTATCAGAGAGTAACCTTGGA  300
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATACCCTAGGTTGGCTTAGAACTTGTTATGTATCAGAAAGTAACCTTGGA  299

seq1  TTTCTGATCTTCTACCCCATAAGTTCTGGGGACATAGACACGTGCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCTTCTACCCCATAAGTTCTGGGGACATAGACACGTGCCACTG  349

seq1  GGCTCCATTTATGCAAGGCTGGAGATGAAACACAAGGCTTCCTATGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATTTATGCAAGGCTGGAGATGAAACACAAGGCTTCCTATGGGCG  399

seq1  AGGCAAGCACCCTGCCCACTGGGCTACCCGTCCCTGCTCACAGCACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCACCCTGCCCACTGGGCTACCCGTCCCTGCTCACAGCACTGCA  449

seq1  TTTTTCATAATTTTATTTGTGAAAACACAACCACAAAGAAGCCACATATA  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTTCATAATTTTATTTGTGAAAACACAACCGCAAAGAAGCCACATATA  499

seq1  TTTAAGTTGTGGAAAAAAAAAAGTAAATTGCTTTTTGGCAACAACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGTGGAAAAAAAAAAGTAAATTGCTTTTTGGCAACAACAAAAG  549

seq1  TCCATACGATTAAAGACATTTGGTCTGAATTGTTGCATGAATGTTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACGATTAAAGACATTTGGTCTGAATTGTTGCATGAATGTTTGTTC  599

seq1  ACAAAGTAGCTACAGTATCTGAACTGACAATCCTGTTCTCTAGGCCGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAGCTACAGTATCTGAACTGACAATCCTGTTCTCTAGGCCGTGC  649

seq1  TATGAAAGATGGAAACACAGTTCAATTAACCCATTTCTTCAGTTATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGATGGAAACACAGTTCAATTAACCCATTTCTTCAGTTATTTTA  699

seq1  TCCCTTTCCATTGGTCTGCCCTAGATAGCGTATTCTGTCTTATGAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCATTGGTCTGCCCTAGATAGCGTATTCTGTCTTATGAGTGAC  749

seq1  ACATTAGATAATACGAGTCAGCTAGAACCTTCGGAGACTCGTAAACACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGATAATACGAGTCAGCTAGAACCTTCGGAGACTCGTAAACACCA  799

seq1  ACCCATTGTTAAAATGATCCATCTCAATAAAATGAGTCAATAAATGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTGTTAAAATGATCCATCTCAATAAAATGAGTCAATAAATGAAGC  849

seq1  CTTTAAAAATACATTCGTGTCCTATTGGCTTGACAAATGAGTGGCATGTA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CTTTAAAAATACATTCGTGTCCTATTGGCTTGACAAATGATTGGCATGTT  899

seq1  ATACAGCAATCTAGGAATGAGCTAATTTTTTATGAAGATATTT-GAAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACAGCAATCTAGGAATGAGCTAATTTTTTATGAAGATATTTGGAAGTG  949

seq1  GTTTCTTACATCATCTATTGTTTCTGTCAGGATTTACTTTATGG-TCACT  998
      ||||||||| |||||||||| |||||||||||||  |||||||| |||||
seq2  GTTTCTTACTTCATCTATTG-TTCTGTCAGGATTACCTTTATGGATCACT  998

seq1  GAAACATTTATTCGATGACAGTGAACATCT-GGAATCCATG-CCTT-AGT  1045
      || |||||||||| ||||||| || ||||| ||||  |||| |||| | |
seq2  GACACATTTATTCTATGACAGAGATCATCTAGGAAGTCATGTCCTTGACT  1048

seq1  CAAGTCGTGGGAGGGA----TTCATCGATCAGGAAAGCAGATAATTTGAG  1091
      ||||||  ||||||||    | ||||||||| | |||||||| | |||| 
seq2  CAAGTC--GGGAGGGATGAGTCCATCGATCATG-AAGCAGATGA-TTGA-  1093

seq1  GTATAGG-TATAT-AAAAACTTCATGGTAGGATACAGAACGATGT-GAGC  1138
      || |||| ||| | |||| |||||||   | ||||||    |||| ||||
seq2  GTCTAGGTTATCTCAAAACCTTCATGAAGGCATACAGGCGAATGTCGAGC  1143

seq1  TCAGGGATT  1147
      |||||||||
seq2  TCAGGGATT  1152

seq1: chr18_66091934_66092473
seq2: B6Ng01-227K12.g_67_606 (reverse)

seq1  ACACACACACACACACACACACACACACACACACAAGCATAAGCACACAC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACACACACACACACACACACACACACACAAGCATAAGCACACAC  50

seq1  ACATGTACATACAAGTATAAACACATGCACATACATGCATATGCACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACATACAAGTATAAACACATGCACATACATGCATATGCACATAT  100

seq1  GCATACTCATATACATGCACACGCACACATATGCATGCACGCACATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTCATATACATGCACACGCACACATATGCATGCACGCACATGTAC  150

seq1  TATTCCTCCAAGAGATTTGTCTTTCATCAAGTGTCATGATAACCCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCCAAGAGATTTGTCTTTCATCAAGTGTCATGATAACCCTGTCA  200

seq1  GGAAGACACAGTTGGCCCCATTTCATAAGTGGGTCAGACACAAAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACAGTTGGCCCCATTTCATAAGTGGGTCAGACACAAAGACATT  250

seq1  GTCCCAGTTTACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTTTTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TATGTGTGTGTGTGTGTAAGCTGTCCTCTGGGCACAGCAGGAATGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTAAGCTGTCCTCTGGGCACAGCAGGAATGGCAGC  350

seq1  TGCCCTCTTGAAGCATCTATGATTACCTGCAAGACACTTGCATGAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTGAAGCATCTATGATTACCTGCAAGACACTTGCATGAAGTAT  400

seq1  CTGTCTGCCATGGAGGGGCAGGGCTCATTGGACTGACCCCTTCCTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCATGGAGGGGCAGGGCTCATTGGACTGACCCCTTCCTAAGGA  450

seq1  TTTATACAGCTAACGGTTGCTAAGTGGGAGAGTCCACACGAGGGGAGGGG  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTATACAGCTAACGGTTGATAAGTGGGAGAGTCCACACGAGGGGAGGGG  500

seq1  CAGGTTTATAGACAGTTAACAGCAGCTGAGAGAAGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATAGACAGTTAACAGCAGCTGAGAGAAGAATTC  540