BAC Information

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BAC

Clone NameB6Ng01-227O19
Chromosome18 (Build37)
Map Location 42,141,053 - 42,142,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2
Downstream geneGm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227O19.bB6Ng01-227O19.g
ACCGA041468GA041469
length1,1881,089
definitionB6Ng01-227O19.b B6Ng01-227O19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagcccatacctaaacatgatacaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcaacatag
tacttgaagtattagccagagcaattcaacaacaaaaggagatgaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagttgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagtttcaatgaagtagctggatataaaattaactccaaaaag
tcaatggcctttctctacacaaaggataagcaggacgagaaagaaattag
ggaaacagcacccttctcaatagtcacaaataatataaaataccttggtg
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatgaaaagatctcccatg
ctcatggattggcaggatcgatatagtaaaaatgactatcttgccaaaag
caatctacagatacaatgcaatccccaccaaaattccaactcaattcttc
aactaattagaaagggaaatctgcaaattcatctggaataacaaaaatcc
taggatagcaaaaactattctcaatgataaaagaacctctggtggaatca
ccatgcctgacctaaagctatactaccgagcagttgtgataaaaactaca
tggtactggtatagtgacagacaagtagaccaatggaatagaactgaaga
cccagaaataaacccacacacctatgctcacttgatctttgacagggagc
taaaaccatccagtggaaaaagacagcattttcaacaaatggtgctggca
caactggtggtatcatgtagagaatgtgaatgatccaatccctatctcct
gtactagtcaaatctagtggatcaggactccacaataaatcagagacagt
gaactatagaggagaaagtgggcaagcctcgaagatatgcccaagcaagt
ctgaatagaacagccatggctgcctgtagatgaaatcgcatggtcctaat
gccagctcgtagccaaacactgttcattagacagaagc
gaattccctgtttgagatgtgcagaatgcgttctcttcctggttgaatga
cgactggatgtttgagtaaaggagggtcatggatgcaagggtttttgttt
ttgttttttgctctttggctgctgtgttagggaggaaacagtagggtaag
gggagacttgggaggctggcagtggatggttgccactatccaggtggtga
cttatggtaataagtagtccaactctgaatgtattctgaaggtagagccc
agggtttgtttactgctctttgtattcagaaatctccactttctgatttg
agaactatgggtgttgttcaggacagaaagcagcttagggaaaggtaggc
tggtcctctaggtctctaagaatccctttagagctggaagcaagtgtgat
gattgcaaacatcatctggacaatgatgccatgatacaataatgccaagg
atacagtgatgcagtgatacagtaatgccaaggatacagtgatgccaatt
atacaataatgcaattgatacagtgatgcaatgatacaataatgccaatg
atacagtgatgcagcgatacagtaatgccaaggatatagtgatgcagtga
tacaataatgctaacgatacagtgatgccaattatacaataatgcaatag
atacagtgatgcaatgatacaatgtcaatgatacagtgaagtcaattata
caataataccaatgatacagtgatgccatgatacaatgataccatgttct
ctgaaagtgcaagaactttttaaatgaacaagggacttcagacatccagt
gttttacagaacatgatggcccatgcctggatgtccagcagtggggaaag
aggaggcaggagaatgctgagtttgacatcagcctgggttatacagtgag
acagacaaattaagcccaagccaaaacagaccatgccaaaaattcagcag
taatacgagctgttttttacgttgggtttccatttacattccaggcaagg
tgcagagtccccctcaagaaatgagctaccaaagagactaggtacttagc
actaattgaattacagcactgggccctgttaggtcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42141053_42142133
seq2: B6Ng01-227O19.g_68_1156 (reverse)

seq1  CCTTGA-CTTACA-GGCCCAGTGCTGTAATTTCATTAGTGCTAAGTACTA  48
      |||||| || ||| |||||||||||||||||  |||||||||||||||  
seq2  CCTTGACCTAACAGGGCCCAGTGCTGTAATTCAATTAGTGCTAAGTACCT  50

seq1  ATTCTTCTTTTGT-GCTCATTTCCTGAGGGG--CTCTGCACC-TGCCTGG  94
      | || ||||| || ||||||||| |||||||  ||||||||| |||||||
seq2  AGTC-TCTTTGGTAGCTCATTTCTTGAGGGGGACTCTGCACCTTGCCTGG  99

seq1  AATGT-AATGGAAACCCAACGTAAAAAACAGCTCGTATTACTGCTGAATT  143
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTAAATGGAAACCCAACGTAAAAAACAGCTCGTATTACTGCTGAA-T  148

seq1  TTTTGGCATGGTCTGTTTTGGCTT-GGCTT-ATTTGTCTGTCTCACTGTA  191
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TTTTGGCATGGTCTGTTTTGGCTTGGGCTTAATTTGTCTGTCTCACTGTA  198

seq1  TAACCCAGGCTGATGTCAAACTCAGCATTCTCCTGCCTCCTC-TTCCCCA  240
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAACCCAGGCTGATGTCAAACTCAGCATTCTCCTGCCTCCTCTTTCCCCA  248

seq1  CTGCTGGACATCCAGGCATGGGCCATCATGTTCTGTAAAACACTGGATGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACATCCAGGCATGGGCCATCATGTTCTGTAAAACACTGGATGT  298

seq1  CTGAAGTCCCTTGTTCATTTAAAAAGTTCTTGCACTTTCAGAGAACATGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCCCTTGTTCATTTAAAAAGTTCTTGCACTTTCAGAGAACATGG  348

seq1  TATCATTGTATCATGGCATCACTGTATCATTGGTATTATTGTATAATTGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGTATCATGGCATCACTGTATCATTGGTATTATTGTATAATTGA  398

seq1  CTTCACTGTATCATTGACATTGTATCATTGCATCACTGTATCTATTGCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGTATCATTGACATTGTATCATTGCATCACTGTATCTATTGCAT  448

seq1  TATTGTATAATTGGCATCACTGTATCGTTAGCATTATTGTATCACTGCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATAATTGGCATCACTGTATCGTTAGCATTATTGTATCACTGCAT  498

seq1  CACTATATCCTTGGCATTACTGTATCGCTGCATCACTGTATCATTGGCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATCCTTGGCATTACTGTATCGCTGCATCACTGTATCATTGGCAT  548

seq1  TATTGTATCATTGCATCACTGTATCAATTGCATTATTGTATAATTGGCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATCATTGCATCACTGTATCAATTGCATTATTGTATAATTGGCAT  598

seq1  CACTGTATCCTTGGCATTACTGTATCACTGCATCACTGTATCCTTGGCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATCCTTGGCATTACTGTATCACTGCATCACTGTATCCTTGGCAT  648

seq1  TATTGTATCATGGCATCATTGTCCAGATGATGTTTGCAATCATCACACTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATCATGGCATCATTGTCCAGATGATGTTTGCAATCATCACACTT  698

seq1  GCTTCCAGCTCTAAAGGGATTCTTAGAGACCTAGAGGACCAGCCTACCTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGCTCTAAAGGGATTCTTAGAGACCTAGAGGACCAGCCTACCTT  748

seq1  TCCCTAAGCTGCTTTCTGTCCTGAACAACACCCATAGTTCTCAAATCAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGCTGCTTTCTGTCCTGAACAACACCCATAGTTCTCAAATCAGA  798

seq1  AAGTGGAGATTTCTGAATACAAAGAGCAGTAAACAAACCCTGGGCTCTAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGATTTCTGAATACAAAGAGCAGTAAACAAACCCTGGGCTCTAC  848

seq1  CTTCAGAATACATTCAGAGTTGGACTACTTATTACCATAAGTCACCACCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAATACATTCAGAGTTGGACTACTTATTACCATAAGTCACCACCT  898

seq1  GGATAGTGGCAACCATCCACTGCCAGCCTCCCAAGTCTCCCCTTACCCTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGGCAACCATCCACTGCCAGCCTCCCAAGTCTCCCCTTACCCTA  948

seq1  CTGTTTCCTCCCTAACACAGCAGCCAAAGAGCAAAAAACAAAAACAAAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTCCCTAACACAGCAGCCAAAGAGCAAAAAACAAAAACAAAAA  998

seq1  CCCTTGCATCCATGACCCTCCTTTACTCAAACATCCAGTCGTCATTCAAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCATCCATGACCCTCCTTTACTCAAACATCCAGTCGTCATTCAAC  1048

seq1  CAGGAAGAGAACGCATTCTGCACATCTCAAACAGGGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGAACGCATTCTGCACATCTCAAACAGGGAATTC  1089