BAC Information

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BAC

Clone NameB6Ng01-228F05
Chromosome18 (Build37)
Map Location 4,763,734 - 4,764,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228F05.bB6Ng01-228F05.g
ACCGA041765GA041766
length1,1781,115
definitionB6Ng01-228F05.b B6Ng01-228F05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatagctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagatgacaga
agatgctggataggatgtggagaaagaggaacagtcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaactggacacagtactattggaggatcccgcaataccgctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctcaactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaata
gagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaa
atggatggacctgaaggacttcatcctgggtgaggtaacccaatcacaaa
agaactcactgataagtggatattagcccagaaatttagaatacccaaga
tataagatacaatttgctaaatgcatgaaactcaagaagaacgaagacca
aagtgtggacactttgccccttcttagaattgggaataaaacacccatgg
aaggagttacagagacaaagtttggagctgagacgaacagatggaccatc
taaaacctgccatatctgggaatccatcccataatcagcttccaaacgct
gacaccatagcatacactagcaagattttgctaaaagggacccagatatg
gctgtttcttttgagagtatgcttggggcctggcaaacacagaagtggat
gctcacagttcagctattggatggatcacagggcccccaacggaagagct
agggaaagtactcaaggagctgaaagggatctgcatcctattaggtgaac
aacaatatgaactaacattacccccccctgagctctgtctctacttgaat
attgattcagaagatggcctagtcagccatcagttgaagagaggcccaat
tgatcgtgcaacttattattgcctcagtacttgggaatttccaggccaga
ttgtgagtgtgttgtgctatgagtaagt
gaattcactggagagatttgcagtcagcttttgaacattttggaaaatta
aatgtcttagaaaaccttccgttcacattgaggctctcagtctttcttgt
tgggcgatgtgagaaagacaagggaagagactgtctggacaaagttcact
catgtgagcaaagcctcattgttaaaaacaaaacagaaaccacacagaga
gaaagacatcccctcatgtcctggaatttgctatagttagcttttctagt
agctactcgactcagattgctagaagcctcctgtctgtgatgccacagct
ggagggaccttgcagggcagctgttagagttaactcctgatcctggttgc
tgcagtgtgagctcactaaggaaaacttaaactgcaaacccacagacaca
atcgtatggtggaaaattaagactcagtgtgcagtccacgctcagagcaa
agcaagcctggatggtggacagaaaagacgaaggggactagagataaaaa
gaagcccctcagcctggggcttgtttccctgcctgctgcctgacagccaa
gaaacttcaacaccactgacaatgctaaagctgcctgcaaacataacatg
tcttcctaaagatatgagactccaacccaggatcttcacaacagcaaagg
agccatacctcctcagggtgcagatgctaaagctccagttagttggcact
cctctctcaccccgaaatctaagcagtgcattacacagaagccaccttac
ggcttcactttcaaaagaactccaagagagatgagtcggctcaaagactt
ttaatgtagataccaagtcttgtttgctcttgaagccttagaagagactt
acacagtctttgagacatatttactgagagacacagcatcttcgtgtatt
agccgtgcaaacggacccaagcaggactcttgggaagaggcccacgccct
agcttctggattttattttcctggatgactctgtgtgaaatacttaaaac
tcacctaacttttgcttttagttaaatcttcctgacaatttgctgaagac
agtcagaagggttcttgccttatcctggaaaggagtacctctagagaggc
aggaactcctaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4763734_4764830
seq2: B6Ng01-228F05.g_69_1183

seq1  GAATTCACTGGAGAGATTTGCAGTCAGCTTTTGAACATTTTGGAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGAGATTTGCAGTCAGCTTTTGAACATTTTGGAAAATTA  50

seq1  AATGTCTTAGAAAACCTTCCGTTCACATTGAGGCTCTCAGTCTTTCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAGAAAACCTTCCGTTCACATTGAGGCTCTCAGTCTTTCTTGT  100

seq1  TGGGCGATGTGAGAAAGACAAGGGAAGAGACTGTCTGGACAAAGTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGATGTGAGAAAGACAAGGGAAGAGACTGTCTGGACAAAGTTCACT  150

seq1  CATGTGAGCAAAGCCTCATTGTTAAAAACAAAACAGAAACCACACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGCAAAGCCTCATTGTTAAAAACAAAACAGAAACCACACAGAGA  200

seq1  GAAAGACATCCCCTCATGTCCTGGAATTTGCTATAGTTAGCTTTTCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATCCCCTCATGTCCTGGAATTTGCTATAGTTAGCTTTTCTAGT  250

seq1  AGCTACTCGACTCAGATTGCTAGAAGCCTCCTGTCTGTGATGCCACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCGACTCAGATTGCTAGAAGCCTCCTGTCTGTGATGCCACAGCT  300

seq1  GGAGGGACCTTGCAGGGCAGCTGTTAGAGTTAACTCCTGATCCTGGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACCTTGCAGGGCAGCTGTTAGAGTTAACTCCTGATCCTGGTTGC  350

seq1  TGCAGTGTGAGCTCACTAAGGAAAACTTAAACTGCAAACCCACAGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGAGCTCACTAAGGAAAACTTAAACTGCAAACCCACAGACACA  400

seq1  ATCGTATGGTGGAAAATTAAGACTCAGTGTGCAGTCCACGCTCAGAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTATGGTGGAAAATTAAGACTCAGTGTGCAGTCCACGCTCAGAGCAA  450

seq1  AGCAAGCCTGGATGGTGGACAGAAAAGACGAAGGGGACTAGAGATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCTGGATGGTGGACAGAAAAGACGAAGGGGACTAGAGATAAAAA  500

seq1  GAAGCCCCTCAGCCTGGGGCTTGTTTCCCTGCCTGCTGCCTGACAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCCTCAGCCTGGGGCTTGTTTCCCTGCCTGCTGCCTGACAGCCAA  550

seq1  GAAACTTCAACACCACTGACAATGCTAAAGCTGCCTGCAAACATAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCAACACCACTGACAATGCTAAAGCTGCCTGCAAACATAACATG  600

seq1  TCTTCCTAAAGATATGAGACTCCAACCCAGGATCTTCACAACAGCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAAAGATATGAGACTCCAACCCAGGATCTTCACAACAGCAAAGG  650

seq1  AGCCATACCTCCTCAGGGTGCAGATGCTAAAGCTCCAGTTAGTTGGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACCTCCTCAGGGTGCAGATGCTAAAGCTCCAGTTAGTTGGCACT  700

seq1  CCTCTCTCACCCCGAAATCTAAGCAGTGCATTACACAGAAGCCACCTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCACCCCGAAATCTAAGCAGTGCATTACACAGAAGCCACCTTAC  750

seq1  GGCTTCACTTTCAAAAGAACTCCAAGAGAGATGAGTCGGCTCAAAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACTTTCAAAAGAACTCCAAGAGAGATGAGTCGGCTCAAAGACTT  800

seq1  TTAATGTAGATACCAAGTCTTGTTTGCTCTTGAAGCCTTAGAAGAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGATACCAAGTCTTGTTTGCTCTTGAAGCCTTAGAAGAGACTT  850

seq1  ACACAGTCTTTGAGACATA-TTACTGAGAGACACAGCATC-TCGTGTA-T  897
      ||||||||||||||||||| |||||||||||||||||||| ||||||| |
seq2  ACACAGTCTTTGAGACATATTTACTGAGAGACACAGCATCTTCGTGTATT  900

seq1  AGCCGTGCAAACGGACCCAAGCAGGACTCTT-GGAAGAAGCCCACGCCCT  946
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AGCCGTGCAAACGGACCCAAGCAGGACTCTTGGGAAGAGGCCCACGCCCT  950

seq1  AGC-TCTGGATTTTATTTTCCTGGATGACTCTGTGTG-AATACTT-AAAC  993
      ||| ||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  AGCTTCTGGATTTTATTTTCCTGGATGACTCTGTGTGAAATACTTAAAAC  1000

seq1  TCA-CTAAC-TTTGCTTTTAGTAAATTCTTCCTGAC-ATTTGCTG-AGAC  1039
      ||| ||||| |||||||||||| || |||||||||| |||||||| ||||
seq2  TCACCTAACTTTTGCTTTTAGTTAAATCTTCCTGACAATTTGCTGAAGAC  1050

seq1  AGTCAGA--GGTTC-TGCTTAATC--TGAAAGGAG-ACCTCTAAGAGGGG  1083
      |||||||  ||||| ||| | |||   |||||||| |||||| |||| ||
seq2  AGTCAGAAGGGTTCTTGCCTTATCCTGGAAAGGAGTACCTCT-AGAGAGG  1099

seq1  CAGGAACTC--AGGCT  1097
      |||||||||  |||||
seq2  CAGGAACTCCTAGGCT  1115