BAC Information

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BAC

Clone NameB6Ng01-229K14
Chromosome18 (Build37)
Map Location 31,282,814 - 31,414,831
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229K14.bB6Ng01-229K14.g
ACCGA042737GA042738
length1,1371,176
definitionB6Ng01-229K14.b B6Ng01-229K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,282,814 - 31,283,972)(31,413,664 - 31,414,831)
sequence
gaattcaattaaaactcctgtcagtttgaagaggagacatcacagagaat
ttcacagtatttcctcgaaagatgcatgtgtgtagtatcttctgggagct
gatgaatcttgaatctgtgtaacttttgagtctatctcttccatggatca
tatgtggaaatcactcagagggtaaaatcttgagagttgggctaatccaa
agttttctcggaggtcctgatgaaaggacaaaggagacccagctctgtgt
ctttgcccaaggacagacttggcaagccccttggctggggctggagacag
ggcctgaaagaaggtttcagctcctggaaatctggcttttccctctgaag
aatctatgatgatcaggtccatgacttatgagcttggttctgtggtcctt
ttgtgcaacattacttgattagtttcttgctgaccttggcccattttatg
atggctatcgctgactctgtcccattcatcccatgtgaattgtatataag
atgctgtatttttttaaataagcttgtttgcatgagccattagctagtga
aagacctctgataacaaattttctatcttcttgattttcctcatgttgat
tattcatttagcatagaatgctcaagttgtataatccagagattaattgt
ttcattctaactttcattgttagaagtgatattctgaacacacacacaca
cacacacacacacacacacacaatctcatcagtatcattgttacctggaa
tagtaatccaatagcctgttatgtccacagcttgttagatgagcaaataa
cacccatagatttgaagaatatagtttaaaactatgtttaaagaagggga
agaatttttaaagttccagaaacaaaggtctgtcagttttagcgcaacca
gtagatatgaaaaagacactttagattactttaactttgtaatcaagttt
ctccaaaagtttctactgaaacagtaagacctaacatctgtagatgacat
gatgtgggatgtacatgaaaataaatatcgcatctaaaagtacacttcat
tcaacatatcactttcatcatgtgcagagatatatttaatccttcatttc
atctcactatgtccaccaatacatgatcagcataaga
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccactttcttgagttctttatatatattggatattagtaac
aggaattctatgcaagggaagtatcaaaaaaaccaaaaaacaaaatggag
aactgaagagtcaactctcctctccagctccagttaagcatcattgctca
accaaatggtaccaccatccagtctgtacactattcttcaagtctaagtt
cctccctcctcaccgctctctatcctatctgcatacatacaggagaacag
agaaacacctccatcttagtgaatgtcttatggctagtgagcaagtaaat
ggcattattagtattctgtccatctttgaactgggatgattttgttctta
aatgataataattggtttggaaagtttaactcagtttttatatgtgccct
agttactgtatttcatggttttggatttaaattttctgatgtatgctttg
cattcagaagctactataacaccagtataggatacctcttttggaatccc
aatttcatagaaccttcaaagagaagagagaaagtcacatgttaaaaata
catcaactacagaaaggcaaaggaggctctactgctcatttagaataaac
cttactcagattttaacagcagtctgtattttagtttatttattttgttt
ttccccatttattgattaatttattcactttacattctgatcacagcccc
ctcttcccaatcctttccctcatcccttctttctttctcctttgagaagg
tggaggcctctcctgggtatcaacctaccctggcacatcaagtcacagca
ggacgagacacatcctcacccactgggaccagagaaggcagtccagtcgg
cattcttttataatctaccaagcagttttcaatatttttcaacaatgaag
ctacagtgaaaagtgaagaagtctttcagctgatttgataaacaataatt
ttacttctcactatatacattgactttaagaaggaatctttaagaattgt
ttcaagtctttcagcccttttcattgaggatctcagtagatgactcctgg
agcacccctcagtatatccaggcttcagtcattgccaccttgaaacaaca
tatgccttttgatgttatttgaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31282814_31283972
seq2: B6Ng01-229K14.b_44_1180

seq1  GAATTCAATTAAAACTCCTGTCAGTTTGAAGAGGAGACATCACAGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAACTCCTGTCAGTTTGAAGAGGAGACATCACAGAGAAT  50

seq1  TTCACAGTATTTCCTCGAAAGATGCATGTGTGTAGTATCTTCTGGGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTATTTCCTCGAAAGATGCATGTGTGTAGTATCTTCTGGGAGCT  100

seq1  GATGAATCTTGAATCTGTGTAACTTTTGAGTCTATCTCTTCCATGGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCTTGAATCTGTGTAACTTTTGAGTCTATCTCTTCCATGGATCA  150

seq1  TATGTGGAAATCACTCAGAGGGTAAAATCTTGAGAGTTGGGCTAATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAATCACTCAGAGGGTAAAATCTTGAGAGTTGGGCTAATCCAA  200

seq1  AGTTTTCTCGGAGGTCCTGATGAAAGGACAAAGGAGACCCAGCTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCGGAGGTCCTGATGAAAGGACAAAGGAGACCCAGCTCTGTGT  250

seq1  CTTTGCCCAAGGACAGACTTGGCAAGCCCCTTGGCTGGGGCTGGAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCAAGGACAGACTTGGCAAGCCCCTTGGCTGGGGCTGGAGACAG  300

seq1  GGCCTGAAAGAAGGTTTCAGCTCCTGGAAATCTGGCTTTTCCCTCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAAGAAGGTTTCAGCTCCTGGAAATCTGGCTTTTCCCTCTGAAG  350

seq1  AATCTATGATGATCAGGTCCATGACTTATGAGCTTGGTTCTGTGGTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGATGATCAGGTCCATGACTTATGAGCTTGGTTCTGTGGTCCTT  400

seq1  TTGTGCAACATTACTTGATTAGTTTCTTGCTGACCTTGGCCCATTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAACATTACTTGATTAGTTTCTTGCTGACCTTGGCCCATTTTATG  450

seq1  ATGGCTATCGCTGACTCTGTCCCATTCATCCCATGTGAATTGTATATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATCGCTGACTCTGTCCCATTCATCCCATGTGAATTGTATATAAG  500

seq1  ATGCTGTATTTTTTTAAATAAGCTTGTTTGCATGAGCCATTAGCTAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTATTTTTTTAAATAAGCTTGTTTGCATGAGCCATTAGCTAGTGA  550

seq1  AAGACCTCTGATAACAAATTTTCTATCTTCTTGATTTTCCTCATGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCTGATAACAAATTTTCTATCTTCTTGATTTTCCTCATGTTGAT  600

seq1  TATTCATTTAGCATAGAATGCTCAAGTTGTATAATCCAGAGATTAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTAGCATAGAATGCTCAAGTTGTATAATCCAGAGATTAATTGT  650

seq1  TTCATTCTAACTTTCATTGTTAGAAGTGATATTCTGAACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTAACTTTCATTGTTAGAAGTGATATTCTGAACACACACACACA  700

seq1  CACACACACACACACACACACAATCTCATCAGTATCATTGTTACCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAATCTCATCAGTATCATTGTTACCTGGAA  750

seq1  TAGTAATCCAATAGCCTGTTATGTCCACAGCTTGTTAGATGAGCAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATCCAATAGCCTGTTATGTCCACAGCTTGTTAGATGAGCAAATAA  800

seq1  CACCCATAGATTTGAAGAATATAGTTTAAAACTATGTTTAAAGAAGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACCCATAGATTTGAAGAATATAGTTTAAAACTATGTTTAAAGAA-GGGG  849

seq1  AAGAATTTTTAAAGTTCCAGAAACAAAGGTCTGTCAGTTTTAGCGCAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTTAAAGTTCCAGAAACAAAGGTCTGTCAGTTTTAGCGCAACC  899

seq1  AGTAGATATGAAAAAAGACACCTTTAGATTACTTTAACTTTGTAATCAAG  950
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  AGTAGATATG-AAAAAGACA-CTTTAGATTACTTTAACTTTGTAATCAAG  947

seq1  TTTCTCCAAAAGTTTCTAACTGAAAACAGTAAGACCTAACATCTGTAGAT  1000
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TTTCTCCAAAAGTTTCT-ACTG-AAACAGTAAGACCTAACATCTGTAGAT  995

seq1  GACATGATGTGGGATGTACATGGAAAATAAATAATCGGCATCTAAAAGTA  1050
      ||||||||||||||||||||| |||||||||| ||| |||||||||||||
seq2  GACATGATGTGGGATGTACAT-GAAAATAAAT-ATC-GCATCTAAAAGTA  1042

seq1  CAACCTCATTCAACATATTCACTTTTCAATCATGTGCAGAGATTAATATT  1100
      | || |||||||||||| |||||||   |||||||||||||||  |||||
seq2  C-ACTTCATTCAACATA-TCACTTT--CATCATGTGCAGAGAT--ATATT  1086

seq1  TAAAATTCCCTCAAATTTCATCTCACTATGGTCACCAATACAAATGATCA  1150
      |||   ||| ||  ||||||||||||||||  |||||||||  |||||||
seq2  TAA---TCCTTC--ATTTCATCTCACTATGTCCACCAATAC--ATGATCA  1129

seq1  GCCATAAGA  1159
      | |||||||
seq2  G-CATAAGA  1137

seq1: chr18_31413664_31414831
seq2: B6Ng01-229K14.g_66_1241 (reverse)

seq1  GTATTCAAATAACATCAAAA-GCATATGTTGTTTTTCCAAAGGTGGC-AT  48
      |||||||||||||||||||| |||||||||||||     |||||||| ||
seq2  GTATTCAAATAACATCAAAAGGCATATGTTGTTT----CAAGGTGGCAAT  46

seq1  GACTGAAAGCTGAATTATACTGA--GGTGCT-CAGGAGTCATCTACTGAG  95
      |||||||  ||| | ||||||||  |||||| ||||||||||||||||||
seq2  GACTGAAGCCTGGA-TATACTGAGGGGTGCTCCAGGAGTCATCTACTGAG  95

seq1  AACCTTCAATGAAAAAGGCCTGAAAAGACCTGAAACA--TCCT-AAGATC  142
      | || |||||| |||||| ||| |||||| |||||||  || | ||||| 
seq2  ATCC-TCAATG-AAAAGGGCTG-AAAGACTTGAAACAATTCTTAAAGATT  142

seq1  CCTTC-TAAAGTCAATG--TATAGTGAGAAGTAAAAT--ATGTTTATCAA  187
      ||||| |||||||||||  ||||||||||||||||||   ||||||||||
seq2  CCTTCTTAAAGTCAATGTATATAGTGAGAAGTAAAATTATTGTTTATCAA  192

seq1  ATCAGCTG-AAGACTTC-TCACTTTTCACTGTAGCTTTCATTGTTG-AAA  234
      |||||||| |||||||| ||||||||||||||||| |||||||||| |||
seq2  ATCAGCTGAAAGACTTCTTCACTTTTCACTGTAGC-TTCATTGTTGAAAA  241

seq1  ATATTGAAAACTGCTTGGTAGATTAT-AAAGAATGCCGACTGGACTGCCT  283
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATTGAAAACTGCTTGGTAGATTATAAAAGAATGCCGACTGGACTGCCT  291

seq1  TCTCTGGTCCCAGTGGGTGAGGATGTGTCTCGTCCTGCTGTGACTTGATG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTCCCAGTGGGTGAGGATGTGTCTCGTCCTGCTGTGACTTGATG  341

seq1  TGCCAGGGTAGGTTGATACCCAGGAGAGGCCTCCACCTTCTCAAAGGAGA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGTAGGTTGATACCCAGGAGAGGCCTCCACCTTCTCAAAGGAGA  391

seq1  AAGAAAGAAGGGATGAGGGAAAGGATTGGGAAGAGGGGGCTGTGATCAGA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGGGATGAGGGAAAGGATTGGGAAGAGGGGGCTGTGATCAGA  441

seq1  ATGTAAAGTGAATAAATTAATCAATAAATGGGGAAAAACAAAATAAATAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGTGAATAAATTAATCAATAAATGGGGAAAAACAAAATAAATAA  491

seq1  ACTAAAATACAGACTGCTGTTAAAATCTGAGTAAGGTTTATTCTAAATGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATACAGACTGCTGTTAAAATCTGAGTAAGGTTTATTCTAAATGA  541

seq1  GCAGTAGAGCCTCCTTTGCCTTTCTGTAGTTGATGTATTTTTAACATGTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAGCCTCCTTTGCCTTTCTGTAGTTGATGTATTTTTAACATGTG  591

seq1  ACTTTCTCTCTTCTCTTTGAAGGTTCTATGAAATTGGGATTCCAAAAGAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCTTCTCTTTGAAGGTTCTATGAAATTGGGATTCCAAAAGAG  641

seq1  GTATCCTATACTGGTGTTATAGTAGCTTCTGAATGCAAAGCATACATCAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTATACTGGTGTTATAGTAGCTTCTGAATGCAAAGCATACATCAG  691

seq1  AAAATTTAAATCCAAAACCATGAAATACAGTAACTAGGGCACATATAAAA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAATCCAAAACCATGAAATACAGTAACTAGGGCACATATAAAA  741

seq1  ACTGAGTTAAACTTTCCAAACCAATTATTATCATTTAAGAACAAAATCAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTAAACTTTCCAAACCAATTATTATCATTTAAGAACAAAATCAT  791

seq1  CCCAGTTCAAAGATGGACAGAATACTAATAATGCCATTTACTTGCTCACT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCAAAGATGGACAGAATACTAATAATGCCATTTACTTGCTCACT  841

seq1  AGCCATAAGACATTCACTAAGATGGAGGTGTTTCTCTGTTCTCCTGTATG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAGACATTCACTAAGATGGAGGTGTTTCTCTGTTCTCCTGTATG  891

seq1  TATGCAGATAGGATAGAGAGCGGTGAGGAGGGAGGAACTTAGACTTGAAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATAGGATAGAGAGCGGTGAGGAGGGAGGAACTTAGACTTGAAG  941

seq1  AATAGTGTACAGACTGGATGGTGGTACCATTTGGTTGAGCAATGATGCTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTACAGACTGGATGGTGGTACCATTTGGTTGAGCAATGATGCTT  991

seq1  AACTGGAGCTGGAGAGGAGAGTTGACTCTTCAGTTCTCCATTTTGTTTTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGCTGGAGAGGAGAGTTGACTCTTCAGTTCTCCATTTTGTTTTT  1041

seq1  TGGTTTTTTTGATACTTCCCTTGCATAGAATTCCTGTTACTAATATCCAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTGATACTTCCCTTGCATAGAATTCCTGTTACTAATATCCAA  1091

seq1  TATATATAAAGAACTCAAGAAAGTGGACTCCAGAAAATCAAATAACCCCA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAGAACTCAAGAAAGTGGACTCCAGAAAATCAAATAACCCCA  1141

seq1  TTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  1168
      |||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  1176