BAC Information

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BAC

Clone NameB6Ng01-231A06
Chromosome18 (Build37)
Map Location 6,166,614 - 6,167,552
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12
Downstream geneKif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231A06.bB6Ng01-231A06.g
ACCGA043729GA043730
length9461,191
definitionB6Ng01-231A06.b B6Ng01-231A06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagacctaccagggatatgtgggaagggcttgccttaaaaaaac
aaaaaaaaccccacatcctttaacaaattataaaacaacagattggatgt
gaaaaggtacacagcaaaagttcagagtgattcttacccgagtggcgtaa
gacgtcttagtactcaggcgtgaaaacgttttatttttagaccgttagca
tgttctatttacctatttacatactgtgtgtgtgtatgtgtgtacgtgtg
cgcacatgttacttaggacaaaatccaaagagagtatatgtatctgtttg
tgtgtttctatgtgagcttgtttgcttgacagtttatacctcatctctgc
taagcacaatggtaaatatgacaggcactgtttcaaaaatctgtaacatg
ctaaaaagatttgaaaagactgtttgcaatataaagttaacagcaaatgt
gtccaaacagtctggaaccctgcgaaaggaaaactacaagcaaatgtatg
tatgtttgtgtatggtgtgtgtgtgtatatcagaggacaatttgcaggat
ttctctccttccaccttgtgagtcctggagatcaaaatcaggtcatctta
ccaggaagtgctcactgagtcatctcactggctccaaaaactcactttca
acaaaacctttttgttgacatttttcttggtctagtggctgaggattttt
gctgatgacatgcttgatttaagaaaagcaaaagtcagaagccgggcgtg
gtggcacacgccttttaatcccatcactttgggaggcagaggcgggcaga
tttctgagttcgaggccagccctggtctacagagtgagttccaggacagc
cagggcttacacagagaaaccctgtcttcgaaaaaacaacaacaagaaag
aaagacagaaagacagaaataaataagaatgaaagaaagagagaga
gaattccaacccagtaaacaagaaccagtgagctgtgtagaacttaccat
gcaagtttccacgaagtacttgccatccttagtgtggtcccagagggacc
caatggctcacaatacactgaattaaaactccagatgcgaagcttatcga
acctttccgcaacaaggctgggatgacaggctaaagggagaattttttaa
attattttatttatttacattccagtcattgactccactctcagaccccc
ctctcatagtttctcatcccattcctcctcctccttgcctccaagagggt
gccttaccccttccttggggcctcaagtctctggagaattaagcacatct
tctcctactgaggcctgagtaggcaaatctctgctatatttgtgccaggg
gccgtggactagcccatatatgctcagtctctggaagctccctggggtgt
aggctagttgagactgctttctggtcttcctatggggtctctctcccctt
cagcttcttcaatttttccattaattcaaccatagaggtccccaacttca
gttcaatggtttggtataagtatttgcttctgtctcagtcagctgctggt
ggggcctcccagaggacagccatgctaggcttctgtctgtaagcacatta
cagcatcagaaatagtgtcaggccttggtgccctccctgagatggatcgt
ctttcctcagtctcttccatttttgtccctgcagttcttttagacaggaa
cagttctgaggcagaaattttgactgtgggttagtaaccctgtccctcta
tttgaggccctgtctacatactggaggtggaatcttctagttccccctcc
ctaatgttaaggcattttggctaaagtcacccccattgagtcctgaaagt
ctctcatctcccaggtctctggtactttctagagggttcccctgcctccc
accacagcaatgctgcttatctccgttcatctgctggccctctaagtttc
tctctgtcccccatccatacctgatcctgttctcttttccctcttcttcc
aaccacaatccttccctctctgcttccatgattacttctttccctttcta
aataaacaatcctcacttgggcctttcctgcagttacacttctaaggact
gtttatccaggatattctgtacacttttgttttgagccgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6166614_6167552
seq2: B6Ng01-231A06.b_47_992

seq1  GAATTCCAGACCTACCAGGGATATGTGGGAAGGGCTTGCCTTAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCTACCAGGGATATGTGGGAAGGGCTTGCCTTAAAAAAAC  50

seq1  AAAAAAAACCCCACATCCTTTAACAAATTATAAAACAACAGATTGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCCACATCCTTTAACAAATTATAAAACAACAGATTGGATGT  100

seq1  GAAAAGGTACACAGCAAAAGTTCAGAGTGATTCTTACCCGAGTGGCGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTACACAGCAAAAGTTCAGAGTGATTCTTACCCGAGTGGCGTAA  150

seq1  GACGTCTTAGTACTCAGGCGTGAAAACGTTTTATTTTTAGACCGTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTAGTACTCAGGCGTGAAAACGTTTTATTTTTAGACCGTTAGCA  200

seq1  TGTTCTATTTACCTATTTACATACTGTGTGTGTGTATGTGTGTACGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATTTACCTATTTACATACTGTGTGTGTGTATGTGTGTACGTGTG  250

seq1  CGCACATGTTACTTAGGACAAAATCCAAAGAGAGTATATGTATCTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATGTTACTTAGGACAAAATCCAAAGAGAGTATATGTATCTGTTTG  300

seq1  TGTGTTTCTATGTGAGCTTGTTTGCTTGACAGTTTATACCTCATCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTATGTGAGCTTGTTTGCTTGACAGTTTATACCTCATCTCTGC  350

seq1  TAAGCACAATGGTAAATATGACAGGCACTGTTTCAAAAATCTGTAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAATGGTAAATATGACAGGCACTGTTTCAAAAATCTGTAACATG  400

seq1  CTAAAAAGATTTGAAAAGACTGTTTGCAATATAAAGTTAACAGCAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGATTTGAAAAGACTGTTTGCAATATAAAGTTAACAGCAAATGT  450

seq1  GTCCAAACAGTCTGGAACCCTGCGAAAGGAAAACTACAAGCAAATGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACAGTCTGGAACCCTGCGAAAGGAAAACTACAAGCAAATGTATG  500

seq1  TATGTTTGTGTATGGTGTGTGTGTGTATATCAGAGGACAATTTGCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTGTATGGTGTGTGTGTGTATATCAGAGGACAATTTGCAGGAT  550

seq1  TTCTCTCCTTCCACCTTGTGAGTCCTGGAGATCAAAATCAGGTCATCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTTCCACCTTGTGAGTCCTGGAGATCAAAATCAGGTCATCTTA  600

seq1  CCAGGAAGTGCTCACTGAGTCATCTCACTGGCTCCAAAAACTCACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGTGCTCACTGAGTCATCTCACTGGCTCCAAAAACTCACTTTCA  650

seq1  ACAAAACCTTTTTGTTGACATTTTTCTTGGTCTAGTGGCTGAGGA-TTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAAAACCTTTTTGTTGACATTTTTCTTGGTCTAGTGGCTGAGGATTTTT  700

seq1  GCTGATGACATGCTTGATTTAAGAAAAGC-AAAGTCAGAAGCCGGGCGTG  748
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGATGACATGCTTGATTTAAGAAAAGCAAAAGTCAGAAGCCGGGCGTG  750

seq1  GTGGCACACGCC-TTTAATCCCATCAC-TTGGGAGGCAGAGGCGGGCAGA  796
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GTGGCACACGCCTTTTAATCCCATCACTTTGGGAGGCAGAGGCGGGCAGA  800

seq1  TTTCTGAGTTCGAGGCCAG-CCTGGTCTACAGAGTGAGTTCCAGGACAGC  845
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCCTGGTCTACAGAGTGAGTTCCAGGACAGC  850

seq1  CAGGGC-TACACAGAGAAACCCTGTC-TCGAAAAAACAACAACAAGAAAG  893
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGGCTTACACAGAGAAACCCTGTCTTCGAAAAAACAACAACAAGAAAG  900

seq1  AAAGACAGAAAGACAGAAAAAAAAAAGAAAGAAAGAAAGAGAGAGA  939
      ||||||||||||||||||| ||| ||||| ||||||||||||||||
seq2  AAAGACAGAAAGACAGAAATAAATAAGAATGAAAGAAAGAGAGAGA  946