BAC Information

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BAC

Clone NameB6Ng01-231J19
Chromosome18 (Build37)
Map Location 64,964,453 - 65,159,204
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J19.bB6Ng01-231J19.g
ACCGA044168GA044169
length1,0851,069
definitionB6Ng01-231J19.b B6Ng01-231J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,964,453 - 64,965,541)(65,158,143 - 65,159,204)
sequence
gaattcactgtccaccaacattcaggacaaaaggatatgcctcagccaga
agtgatgggattccaaagagataccataagaaaagtgagtaaaatcagta
acatagtctgggtgtatcattggtttttacatttgtatttcaagttttta
aaagataaaattaaaatcttagagataggagcagcctacgagatggctca
gctgatagaggcacttgagcctctataattaataaacataatctgggttc
catatccaggactcacatggtagaaggaaagaaaagaggcttacaggttg
acctttgacctccacacacactgtgatatacatgtatataattaccaata
tggatatatgcagtggttcagtaaggcattattcatagttgtcagattgg
aaacaaggtaggtattaatacataaacagacaaaaaatgtaatatattca
taccataaggcattattcagaggaaaaggagactgaacttttactagtgt
atatgaatgttaaaggtgtattaaataaaaaaaggcagatccaagagaga
atataaataatgtatggtttcgtttattcatttatatgaagttcaagtac
ggacaagacttattttgcattagtaagttctgcctcagagagggtattta
ctgggaaaggtcacaggggatccatgcatagggcaaatgttcctccttga
ccttttacaatccactgagctatagccttaaagttttgtgaaaattatat
accaatttaaaaaaaaaaacctctaccattacagagaaattatggaagat
ataaaaaagcaccctcaataaagatcccatggctggttctttttgaactc
atgggtcactaataaccaaataccaaagagttatgataatgaagacatgg
gaatataagaaaaaaaacagtaagtgactttattttatgtcttcggaagc
caggaaagaatatttcagattagaagcaaaagcaagggcattcaaattaa
gaagctctgagaacaaaagcgatcagccgactttaagtatacttcggaaa
attcaccaaggattgagaacaaggttcatttcctg
gaattccaggaactggggtcatttcaggttggtaggaggagaattcctgg
aaacagtgacagggttgccctggaagggaagagagggaagcgcagggctt
tcctgtccccacctccagggcaggcctccctttgcctgagcatacatagt
aaggtggtcaaccctgcagtgtgattcacagcataggaaggtgctcaaca
ccacagtgtgtgttcacagtcaaaggagagataccatttgcatgggatgt
gtgtctcgcccacattcccacagcacagggaaaatgctgggctttcagac
actcccattcccagggacccatccaccctaagagcttgtcttccattagt
tgttcgaagcacacagaagaaagctttttaaacaatacgccaatattcgc
ttctgtttttttttttttgataatttctcattctataaactcatatacta
tcattaacaggcagagttcagtgatgtgtggggtgtgggcagtcagacaa
cagagatgttacatgcactggcagtagaggatttctctagggtttgggga
gggaggcaggtgtgacatgttaaggggccctgttattcatggtctcctgc
atccggcagagaagctgtaataagaggaccatagggcaaagcatgggggc
caacaagaacatgatgacatgaatcttcagcaggcaccggccctcttttg
agacctttccaccacaaaatagaaaagggccttggacaggggacagtagg
ctgtctagtcattgaactgctggcctctgtgacataagggactagttggc
cttagcgcacactactgaaactattctcaagaataatcgagcaagctggg
cctcggacactttctagggtctcagctggggtcaaagctcaagagcttct
gtgtgcttcaaagtctggctcaaatcctttcacaactgttttatcatcat
cctgcctccctcccataacatactgccatgccctacagagagccttacct
ggctcaaaagccttggatatcacaagcagcaccttgaaatgagtgctaaa
gcaccagaagctcagacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_64964453_64965541
seq2: B6Ng01-231J19.b_42_1126

seq1  GAATTCACTGTCCACCAACATTCAGGACAAAAGGATATGCCTCAGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCACCAACATTCAGGACAAAAGGATATGCCTCAGCCAGA  50

seq1  AGTGATGGGATTCCAAAGAGATACCATAAGAAAAGTGAGTAAAATCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGGATTCCAAAGAGATACCATAAGAAAAGTGAGTAAAATCAGTA  100

seq1  ACATAGTCTGGGTGTATCATTGGTTTTTACATTTGTATTTCAAGTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCTGGGTGTATCATTGGTTTTTACATTTGTATTTCAAGTTTTTA  150

seq1  AAAGATAAAATTAAAATCTTAGAGATAGGAGCAGCCTACGAGATGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAATTAAAATCTTAGAGATAGGAGCAGCCTACGAGATGGCTCA  200

seq1  GCTGATAGAGGCACTTGAGCCTCTATAATTAATAAACATAATCTGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGAGGCACTTGAGCCTCTATAATTAATAAACATAATCTGGGTTC  250

seq1  CATATCCAGGACTCACATGGTAGAAGGAAAGAAAAGAGGCTTACAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAGGACTCACATGGTAGAAGGAAAGAAAAGAGGCTTACAGGTTG  300

seq1  ACCTTTGACCTCCACACACACTGTGATATACATGTATATAATTACCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACCTCCACACACACTGTGATATACATGTATATAATTACCAATA  350

seq1  TGGATATATGCAGTGGTTCAGTAAGGCATTATTCATAGTTGTCAGATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATATGCAGTGGTTCAGTAAGGCATTATTCATAGTTGTCAGATTGG  400

seq1  AAACAAGGTAGGTATTAATACATAAACAGACAAAAAATGTAATATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGTAGGTATTAATACATAAACAGACAAAAAATGTAATATATTCA  450

seq1  TACCATAAGGCATTATTCAGAGGAAAAGGAGACTGAACTTTTACTAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAGGCATTATTCAGAGGAAAAGGAGACTGAACTTTTACTAGTGT  500

seq1  ATATGAATGTTAAAGGTGTATTAAATAAAAAAAGGCAGATCCAAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTTAAAGGTGTATTAAATAAAAAAAGGCAGATCCAAGAGAGA  550

seq1  ATATAAATAATGTATGGTTTCGTTTATTCATTTATATGAAGTTCAAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAATGTATGGTTTCGTTTATTCATTTATATGAAGTTCAAGTAC  600

seq1  GGACAAGACTTATTTTGCATTAGTAAGTTCTGCCTCAGAGAGGGTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGACTTATTTTGCATTAGTAAGTTCTGCCTCAGAGAGGGTATTTA  650

seq1  CTGGGAAAGGTCACAGGGGATCCATGCATAGGGCAAATGTTCCTCCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGGTCACAGGGGATCCATGCATAGGGCAAATGTTCCTCCTTGA  700

seq1  CCTTTTACAATCCACTGAGCTATAGCCTTAAAGTTTTGTGAAAATTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACAATCCACTGAGCTATAGCCTTAAAGTTTTGTGAAAATTATAT  750

seq1  ACCAATTT-AAAAAAAAAACCTCTACCATTACAGAGAAATTATGGAAGAT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTAAAAAAAAAAACCTCTACCATTACAGAGAAATTATGGAAGAT  800

seq1  AT-AAAAAGCACCCTCAATAAAGATCCCATGGCTGGTTC-TTTTGAACTC  847
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAAAAAGCACCCTCAATAAAGATCCCATGGCTGGTTCTTTTTGAACTC  850

seq1  AT-GGTCACTAATAACCAAATACCAAAGAGTTATGATAATGAAGACATGG  896
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCACTAATAACCAAATACCAAAGAGTTATGATAATGAAGACATGG  900

seq1  GAATATAAGAAAAAAAACAGTAAGTGACCTTTATTTTATGTCTTCGGAAG  946
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATATAAGAAAAAAAACAGTAAGTGA-CTTTATTTTATGTCTTCGGAAG  949

seq1  CCAGGAAAGAATATTTCAGATTAGAAGCAAAAGCAAGGGCATTCAAATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGAATATTTCAGATTAGAAGCAAAAGCAAGGGCATTCAAATTA  999

seq1  AGGAAGCTCTGAGAACAAAAGCGAATCAGCCGACATTTAAAGTATAACTT  1046
      | ||||||||||||||||||||| ||||||||||  || |||||| ||||
seq2  A-GAAGCTCTGAGAACAAAAGCG-ATCAGCCGAC--TTTAAGTAT-ACTT  1044

seq1  CAGAAAATTCAACCAAAGAATGGAGAACAAAGGTCATTTCCTG  1089
      | |||||||||  | ||| || |||||||| | ||||||||||
seq2  CGGAAAATTCA--CCAAGGATTGAGAACAAGGTTCATTTCCTG  1085

seq1: chr18_65158143_65159204
seq2: B6Ng01-231J19.g_67_1135 (reverse)

seq1  CCGTCTGAGCTTCTGGGTGCTTTAGCACTCATTTCAA-GTGCTGCTTGTG  49
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CCGTCTGAGCTTCT-GGTGCTTTAGCACTCATTTCAAGGTGCTGCTTGTG  49

seq1  ATATTCCCAGGCCTTTTTGGCCAGGT-AGGCTCTCTGTAGGGCATGGCAG  98
      ||||  ||| | |||||  ||||||| |||||||||||||||||||||||
seq2  ATAT--CCAAGGCTTTTGAGCCAGGTAAGGCTCTCTGTAGGGCATGGCAG  97

seq1  TATGTTATGGGAAGGAGGCAGGATGATGATAAAACAG-TGTGAAAGGATT  147
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TATGTTATGGGAGGGAGGCAGGATGATGATAAAACAGTTGTGAAAGGATT  147

seq1  TGAGCCAGACTTTGAAGCACACAG-AGCTCTTGAGCTTTGA-CCCAGCTG  195
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGAGCCAGACTTTGAAGCACACAGAAGCTCTTGAGCTTTGACCCCAGCTG  197

seq1  AGA-CCTAG-AAGTGTCCGA-GCCCAGCTTGCTCGATTATTCTTGAG-AT  241
      ||| ||||| |||||||||| |||||||||||||||||||||||||| ||
seq2  AGACCCTAGAAAGTGTCCGAGGCCCAGCTTGCTCGATTATTCTTGAGAAT  247

seq1  AG-TTCAGTAGTGTGCGCTAAGGCCAACTAGTCCCTTATGTCACAGAGGC  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTAGTGTGCGCTAAGGCCAACTAGTCCCTTATGTCACAGAGGC  297

seq1  CAGCAGTTCAATGACTAGACAGCCTACTGTCCCCTGTCCAAGGCCCTTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCAATGACTAGACAGCCTACTGTCCCCTGTCCAAGGCCCTTTT  347

seq1  CTATTTTGTGGTGGAAAGGTCTCAAAAGAGGGCCGGTGCCTGCTGAAGAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTGGTGGAAAGGTCTCAAAAGAGGGCCGGTGCCTGCTGAAGAT  397

seq1  TCATGTCATCATGTTCTTGTTGGCCCCCATGCTTTGCCCTATGGTCCTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCATCATGTTCTTGTTGGCCCCCATGCTTTGCCCTATGGTCCTCT  447

seq1  TATTACAGCTTCTCTGCCGGATGCAGGAGACCATGAATAACAGGGCCCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGCTTCTCTGCCGGATGCAGGAGACCATGAATAACAGGGCCCCT  497

seq1  TAACATGTCACACCTGCCTCCCTCCCCAAACCCTAGAGAAATCCTCTACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTCACACCTGCCTCCCTCCCCAAACCCTAGAGAAATCCTCTACT  547

seq1  GCCAGTGCATGTAACATCTCTGTTGTCTGACTGCCCACACCCCACACATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCATGTAACATCTCTGTTGTCTGACTGCCCACACCCCACACATC  597

seq1  ACTGAACTCTGCCTGTTAATGATAGTATATGAGTTTATAGAATGAGAAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTCTGCCTGTTAATGATAGTATATGAGTTTATAGAATGAGAAAT  647

seq1  TATCAAAAAAAAAAAAACAGAAGCGAATATTGGCGTATTGTTTAAAAAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAAAAAAAAAACAGAAGCGAATATTGGCGTATTGTTTAAAAAGC  697

seq1  TTTCTTCTGTGTGCTTCGAACAACTAATGGAAGACAAGCTCTTAGGGTGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTGTGCTTCGAACAACTAATGGAAGACAAGCTCTTAGGGTGG  747

seq1  ATGGGTCCCTGGGAATGGGAGTGTCTGAAAGCCCAGCATTTTCCCTGTGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCCTGGGAATGGGAGTGTCTGAAAGCCCAGCATTTTCCCTGTGC  797

seq1  TGTGGGAATGTGGGCGAGACACACATCCCATGCAAATGGTATCTCTCCTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATGTGGGCGAGACACACATCCCATGCAAATGGTATCTCTCCTT  847

seq1  TGACTGTGAACACACACTGTGGTGTTGAGCACCTTCCTATGCTGTGAATC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGAACACACACTGTGGTGTTGAGCACCTTCCTATGCTGTGAATC  897

seq1  ACACTGCAGGGTTGACCACCTTACTATGTATGCTCAGGCAAAGGGAGGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGGGTTGACCACCTTACTATGTATGCTCAGGCAAAGGGAGGCC  947

seq1  TGCCCTGGAGGTGGGGACAGGAAAGCCCTGCGCTTCCCTCTCTTCCCTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGAGGTGGGGACAGGAAAGCCCTGCGCTTCCCTCTCTTCCCTTC  997

seq1  CAGGGCAACCCTGTCACTGTTTCCAGGAATTCTCCTCCTACCAACCTGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAACCCTGTCACTGTTTCCAGGAATTCTCCTCCTACCAACCTGAA  1047

seq1  ATGACCCCAGTTCCTGGAATTC  1062
      ||||||||||||||||||||||
seq2  ATGACCCCAGTTCCTGGAATTC  1069