BAC Information

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BAC

Clone NameB6Ng01-233I15
Chromosome18 (Build37)
Map Location 44,822,369 - 44,823,507
singlet/doubletsinglet
Overlap geneLOC100042883
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneYthdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233I15.bB6Ng01-233I15.g
ACCGA045566GA045567
length1,1711,136
definitionB6Ng01-233I15.b B6Ng01-233I15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctgtcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcagacttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagtcttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgttaagtggatattagcccaaaatc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaat
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagataa
aaagatggaccatgtagagactgccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccca
atgaaggagctagagaaagtacccaagagctaaagggatctgcaccctat
aggtggacacattatgactaccagtacccagagctccttgactctagctg
catattgtatcaaagatggcctaggcgcatcactggaaagagagcccatg
gacacgcaaactttaattgccccagtacaggtacgcccaggtcaaaaggg
aatgggttgggtataggggaa
tctggagcattccatgttttggacttttattttaagaagactcagactgt
actttgtcaaatagttcaaactcagaaaactctgagatgggacacacttt
tactctcacacatttgggttaaaggacagtcagctcggctatacaccctc
acctccagcttcagacatggtgaattcaggacatgttttaggtaagttaa
gtgtcatggcttcccaacccctccctagtggaaggttctgcagcctggca
ctactccagaaagagctacaactctccatcctagcccagcctctgttagg
aaatgaatgaaccaaacaggaaggggatgggtaaaaagacacatgcaaat
gtggtccctttgtgccatcttaagacaaaaataaacatcctatttgagtt
ttttaaaaatagactttggattggaacaatacaatggcctcttcatagaa
ggcttcaggaagcgacaaggtctgcctagaggtggagatattttcttccc
attgtgtgaggagacactggtgaggtttcttaagctgtcatgcagccatc
ctcttttaaaggatctcacatccatagggactttatcacaccagccctct
cctcaccctttattttattgcaactgggtctcattaagttggataggctg
gccttgaactcactgtgcagtcgaagctggccttgaacacgtgatcttct
tgttttcaagctgagtacaagccagggtgatcacccaccaggcttggaag
acttttaactttatttagaaaagacttcaggtagcccctcttccccagag
tattcaccaagtacactgacagtttcatactaagggagagagagcaaagc
ctgattggacatagtaatctttttgagcttttctaattcatactccacaa
tctccagaaagaaacagcccagctctgccaagatagcaatgatatttgtt
gtttatgactggttcttactagttaacccaaggctagcctcgaactccta
tcccatgcctctgctggggcgctgaatttactgctaagtttgggtgagta
tgtgtttttaggaggcaggaggttggagaagacacgaacggaaatgagcg
catgaagttcttaatcttccaagggccaaggcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44822369_44823507
seq2: B6Ng01-233I15.g_75_1210 (reverse)

seq1  ACATGCCCT-GCCCTTGAAAGATTTAAGACACTCATGCGCTCATTCTCGT  49
      ||||||| | ||||||| |||| ||||||   |||||||||||||  |||
seq2  ACATGCCTTGGCCCTTGGAAGA-TTAAGAACTTCATGCGCTCATTTCCGT  49

seq1  TCGTGTCCTCTCCAACCTCCCTGCCTTCCTTAAAAACACATACCTCACCC  99
      ||||||| |||||||||| |||||||  | |||||||||||| |||||||
seq2  TCGTGTCTTCTCCAACCT-CCTGCCT--CCTAAAAACACATA-CTCACCC  95

seq1  -AACTTAGCAGTAAATTCCAGCG-CCCAGCAGAGGCATGGGATAGGAGTT  147
       |||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  AAACTTAGCAGTAAATT-CAGCGCCCCAGCAGAGGCATGGGATAGGAGTT  144

seq1  CGAGGCTAGCC-TGGGTTAACTAGTAAGAACCAGTCATAAACAAACAAAT  196
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CGAGGCTAGCCTTGGGTTAACTAGTAAGAACCAGTCATAAAC-AACAAAT  193

seq1  ATCATTGCTATCTTGGCAGAGCTGGGCTGTTTCTTTCTGGAGATTGTGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTATCTTGGCAGAGCTGGGCTGTTTCTTTCTGGAGATTGTGGA  243

seq1  GTATGAATTAGAAAAGCTCAAAAAGATTACTATGTCCAATCAGGCTTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATTAGAAAAGCTCAAAAAGATTACTATGTCCAATCAGGCTTTGC  293

seq1  TCTCTCTCCCTTAGTATGAAACTGTCAGTGTACTTGGTGAATACTCTGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTTAGTATGAAACTGTCAGTGTACTTGGTGAATACTCTGGG  343

seq1  GAAGAGGGGCTACCTGAAGTCTTTTCTAAATAAAGTTAAAAGTCTTCCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGCTACCTGAAGTCTTTTCTAAATAAAGTTAAAAGTCTTCCAA  393

seq1  GCCTGGTGGGTGATCACCCTGGCTTGTACTCAGCTTGAAAACAAGAAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGGGTGATCACCCTGGCTTGTACTCAGCTTGAAAACAAGAAGAT  443

seq1  CACGTGTTCAAGGCCAGCTTCGACTGCACAGTGAGTTCAAGGCCAGCCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTTCAAGGCCAGCTTCGACTGCACAGTGAGTTCAAGGCCAGCCTA  493

seq1  TCCAACTTAATGAGACCCAGTTGCAATAAAATAAAGGGTGAGGAGAGGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTAATGAGACCCAGTTGCAATAAAATAAAGGGTGAGGAGAGGGC  543

seq1  TGGTGTGATAAAGTCCCTATGGATGTGAGATCCTTTAAAAGAGGATGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGATAAAGTCCCTATGGATGTGAGATCCTTTAAAAGAGGATGGCT  593

seq1  GCATGACAGCTTAAGAAACCTCACCAGTGTCTCCTCACACAATGGGAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACAGCTTAAGAAACCTCACCAGTGTCTCCTCACACAATGGGAAGA  643

seq1  AAATATCTCCACCTCTAGGCAGACCTTGTCGCTTCCTGAAGCCTTCTATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTCCACCTCTAGGCAGACCTTGTCGCTTCCTGAAGCCTTCTATG  693

seq1  AAGAGGCCATTGTATTGTTCCAATCCAAAGTCTATTTTTAAAAAACTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCATTGTATTGTTCCAATCCAAAGTCTATTTTTAAAAAACTCAA  743

seq1  ATAGGATGTTTATTTTTGTCTTAAGATGGCACAAAGGGACCACATTTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTTTATTTTTGTCTTAAGATGGCACAAAGGGACCACATTTGCA  793

seq1  TGTGTCTTTTTACCCATCCCCTTCCTGTTTGGTTCATTCATTTCCTAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTTTTACCCATCCCCTTCCTGTTTGGTTCATTCATTTCCTAACA  843

seq1  GAGGCTGGGCTAGGATGGAGAGTTGTAGCTCTTTCTGGAGTAGTGCCAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGCTAGGATGGAGAGTTGTAGCTCTTTCTGGAGTAGTGCCAGG  893

seq1  CTGCAGAACCTTCCACTAGGGAGGGGTTGGGAAGCCATGACACTTAACTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAACCTTCCACTAGGGAGGGGTTGGGAAGCCATGACACTTAACTT  943

seq1  ACCTAAAACATGTCCTGAATTCACCATGTCTGAAGCTGGAGGTGAGGGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAACATGTCCTGAATTCACCATGTCTGAAGCTGGAGGTGAGGGTG  993

seq1  TATAGCCGAGCTGACTGTCCTTTAACCCAAATGTGTGAGAGTAAAAGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCGAGCTGACTGTCCTTTAACCCAAATGTGTGAGAGTAAAAGTGT  1043

seq1  GTCCCATCTCAGAGTTTTCTGAGTTTGAACTATTTGACAAAGTACAGTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCTCAGAGTTTTCTGAGTTTGAACTATTTGACAAAGTACAGTCT  1093

seq1  GAGTCTTCTTAAAATAAAAGTCCAAAACATGGAATGCTCCAGA  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCTTAAAATAAAAGTCCAAAACATGGAATGCTCCAGA  1136