BAC Information

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BAC

Clone NameB6Ng01-233K14
Chromosome18 (Build37)
Map Location 40,882,297 - 41,012,758
singlet/doubletdoublet
Overlap geneEG225416
Upstream genePabpc2, LOC100041939, Yipf5, Kctd16
Downstream geneLOC677182, LOC100041988, LOC100041997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233K14.bB6Ng01-233K14.g
ACCGA045652GA045653
length4301,149
definitionB6Ng01-233K14.b B6Ng01-233K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,882,297 - 40,882,732)(41,011,601 - 41,012,758)
sequence
taaacattcaaattctaaagagtctttcccaaggaagagccccaaattgg
ttacccagtgacaagtggtcatccaggtaacagtatacagactcagaagg
cttgattcatttatttaggaacatatatctatctctttgtctctatatgc
aacatcaatttaaggaaaaagaggacatgagtctgagcaagagcatggta
gtgcatgggaggggttggagagaggaaagggagaatgatgtaattacata
gtaatttttaataattgttaaaaagtgaaatgaaaatccctttaaaataa
aagtgaaagtaaagtttattggcaagctttatagacttctcaaatacaga
gatgtcttcagactggatagtgctgactttagggggattagctttttgtt
tgagtttagggaatatcacatagtgatttc

gaattcaaggcaaactaggatagctaaggtacacactggacaaaatgggg
actatgacacccagatctttaaggaaccactccagctttgatgagaagac
agacactacaaagaaattacaattaagatgaatatagtaagaagtttaca
ggatatctttgcaaatacaccattaaaaaatccttatttgagcttagaaa
ttggaagagttctctcttaaggagtagaatgtaagggtgaacttcattct
ccagttatgaagattgattaaatatctagcacatacctgtagctgtcctc
caaactgagggatgatactgaacgaggctagtaatgtcctttcgcttttc
tgaacaatctcacgatctcacagtttaagttatggtaaacttaataaatg
ttcacgtgtcttcagatagttctgtgctctgagttcagtgaagatgtgca
ctgatgttttggattttaacttaggccataatagagcacaaaaatcagcc
aagtgacaatttgggaaggaccatgaatatcagtgttaaatctttggcaa
ccttgaagccagccttcaaaagctatactcacatggaattctccttttct
ctgagtttcaaatgcagcacagggactgtattcctcccatacaactccag
ttgttcacctcgagactataccaccttcttttcccaggtcattctcccca
aacccacatctggaggggtcacttcttcacctcacttagttatgctgtca
aaagatcactgccttaaacagccttttcatatagagtccatgaaaattaa
cattcacactcaaggaactgacccctgactctgtattgccaagtaaaata
gtcactagtcactggtggctattaatcttgaatcaattaagcgtaaactt
aaaaccctgctctttgatacaataatgtaaaaccaaaatgctgtgtagcc
acatgtgaataccatctgatgagcacggaaatactagaatcatcagtgta
gagacctttatggacatcactacactattcttcttttttccacgagctct
gcttatcttggcattttgtcatacctgacatgaaaatttattgaagaccg
atcacagaatggcatgaggattggagtgcttacatccagtctatgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40882297_40882732
seq2: B6Ng01-233K14.b_46_481

seq1  GAATTCTAAACATTCAAATTCTAAAGAGTCTTTCCCAAGGAAGAGCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACATTCAAATTCTAAAGAGTCTTTCCCAAGGAAGAGCCCCA  50

seq1  AATTGGTTACCCAGTGACAAGTGGTCATCCAGGTAACAGTATACAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTACCCAGTGACAAGTGGTCATCCAGGTAACAGTATACAGACTC  100

seq1  AGAAGGCTTGATTCATTTATTTAGGAACATATATCTATCTCTTTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTGATTCATTTATTTAGGAACATATATCTATCTCTTTGTCTCT  150

seq1  ATATGCAACATCAATTTAAGGAAAAAGAGGACATGAGTCTGAGCAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAACATCAATTTAAGGAAAAAGAGGACATGAGTCTGAGCAAGAGC  200

seq1  ATGGTAGTGCATGGGAGGGGTTGGAGAGAGGAAAGGGAGAATGATGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTGCATGGGAGGGGTTGGAGAGAGGAAAGGGAGAATGATGTAAT  250

seq1  TACATAGTAATTTTTAATAATTGTTAAAAAGTGAAATGAAAATCCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTAATTTTTAATAATTGTTAAAAAGTGAAATGAAAATCCCTTTA  300

seq1  AAATAAAAGTGAAAGTAAAGTTTATTGGCAAGCTTTATAGACTTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTGAAAGTAAAGTTTATTGGCAAGCTTTATAGACTTCTCAAA  350

seq1  TACAGAGATGTCTTCGGACTGGATAGTGCTGACTTTAGGGGGATTAGCTT  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACAGAGATGTCTTCAGACTGGATAGTGCTGACTTTAGGGGGATTAGCTT  400

seq1  TTTGTTTGAGTTTAGGGAATATCACATAGTGATTTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGAGTTTAGGGAATATCACATAGTGATTTC  436


seq1: chr18_41011601_41012758
seq2: B6Ng01-233K14.g_65_1213 (reverse)

seq1  GAATCATTAGACTTGATTGTAAGCACTCATATCCTCAATGCCATCTTGGT  50
      |||||| |||||| || |||||||||||  |||||| ||||||| |  ||
seq2  GAATCA-TAGACTGGA-TGTAAGCACTCCAATCCTC-ATGCCAT-TCTGT  46

seq1  GATCTGTCTTC-ATAAATTTTAATGTCAGGTATGACAAAAATGCCAAGAT  99
      |||| |||||| ||||||||| |||||||||||||| |||||||||||||
seq2  GATCGGTCTTCAATAAATTTTCATGTCAGGTATGAC-AAAATGCCAAGAT  95

seq1  AAGCAAGAGCTCCGTGGAAAAAGGAAG-ATAGTGTAGTGATGTCCATAAA  148
      |||| |||||| |||||||||| |||| ||||||||||||||||||||||
seq2  AAGC-AGAGCT-CGTGGAAAAAAGAAGAATAGTGTAGTGATGTCCATAAA  143

seq1  GGTCTCTACACTGATTGATTCTAGTATTTTCCGTGCTTCATCAGATGGTA  198
      |||||||||||||| ||||||||||| ||||||||| |||||||||||||
seq2  GGTCTCTACACTGA-TGATTCTAGTA-TTTCCGTGC-TCATCAGATGGTA  190

seq1  TTCACATGTGGCTACACAGCATTTTGGTTTTACATTATTGTTATCAAAGA  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCACATGTGGCTACACAGCATTTTGGTTTTACATTATTG-TATCAAAGA  239

seq1  GCAGGGTTTTAAGTTTACGCTTAATTGATTCAAGATTAATAGCCACCAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTTTAAGTTTACGCTTAATTGATTCAAGATTAATAGCCACCAGT  289

seq1  GACTAGTGACTATTTTACTTGGCAATACAGAGTCAGGGGTCAGTTCCTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGACTATTTTACTTGGCAATACAGAGTCAGGGGTCAGTTCCTTG  339

seq1  AGTGTGAATGTTAATTTTCATGGACTCTATATGAAAAGGCTGTTTAAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAATGTTAATTTTCATGGACTCTATATGAAAAGGCTGTTTAAGGC  389

seq1  AGTGATCTTTTGACAGCATAACTAAGTGAGGTGAAGAAGTGACCCCTCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTTTTGACAGCATAACTAAGTGAGGTGAAGAAGTGACCCCTCCA  439

seq1  GATGTGGGTTTGGGGAGAATGACCTGGGAAAAGAAGGTGGTATAGTCTCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTTTGGGGAGAATGACCTGGGAAAAGAAGGTGGTATAGTCTCG  489

seq1  AGGTGAACAACTGGAGTTGTATGGGAGGAATACAGTCCCTGTGCTGCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACAACTGGAGTTGTATGGGAGGAATACAGTCCCTGTGCTGCATT  539

seq1  TGAAACTCAGAGAAAAGGAGAATTCCATGTGAGTATAGCTTTTGAAGGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAGAGAAAAGGAGAATTCCATGTGAGTATAGCTTTTGAAGGCT  589

seq1  GGCTTCAAGGTTGCCAAAGATTTAACACTGATATTCATGGTCCTTCCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGGTTGCCAAAGATTTAACACTGATATTCATGGTCCTTCCCAA  639

seq1  ATTGTCACTTGGCTGATTTTTGTGCTCTATTATGGCCTAAGTTAAAATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACTTGGCTGATTTTTGTGCTCTATTATGGCCTAAGTTAAAATCC  689

seq1  AAAACATCAGTGCACATCTTCACTGAACTCAGAGCACAGAACTATCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAGTGCACATCTTCACTGAACTCAGAGCACAGAACTATCTGAA  739

seq1  GACACGTGAACATTTATTAAGTTTACCATAACTTAAACTGTGAGATCGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTGAACATTTATTAAGTTTACCATAACTTAAACTGTGAGATCGTG  789

seq1  AGATTGTTCAGAAAAGCGAAAGGACATTACTAGCCTCGTTCAGTATCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCAGAAAAGCGAAAGGACATTACTAGCCTCGTTCAGTATCATC  839

seq1  CCTCAGTTTGGAGGACAGCTACAGGTATGTGCTAGATATTTAATCAATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTGGAGGACAGCTACAGGTATGTGCTAGATATTTAATCAATCT  889

seq1  TCATAACTGGAGAATGAAGTTCACCCTTACATTCTACTCCTTAAGAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGGAGAATGAAGTTCACCCTTACATTCTACTCCTTAAGAGAGA  939

seq1  ACTCTTCCAATTTCTAAGCTCAAATAAGGATTTTTTAATGGTGTATTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCAATTTCTAAGCTCAAATAAGGATTTTTTAATGGTGTATTTGC  989

seq1  AAAGATATCCTGTAAACTTCTTACTATATTCATCTTAATTGTAATTTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATCCTGTAAACTTCTTACTATATTCATCTTAATTGTAATTTCTT  1039

seq1  TGTAGTGTCTGTCTTCTCATCAAAGCTGGAGTGGTTCCTTAAAGATCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTCTGTCTTCTCATCAAAGCTGGAGTGGTTCCTTAAAGATCTGG  1089

seq1  GTGTCATAGTCCCCATTTTGTCCAGTGTGTACCTTAGCTATCCTAGTTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATAGTCCCCATTTTGTCCAGTGTGTACCTTAGCTATCCTAGTTTG  1139

seq1  CCTTGAATTC  1158
      ||||||||||
seq2  CCTTGAATTC  1149


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