BAC Information

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BAC

Clone NameB6Ng01-234N01
Chromosome18 (Build37)
Map Location 21,843,754 - 21,939,609
singlet/doubletdoublet
Overlap genenone
Upstream geneB4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234N01.bB6Ng01-234N01.g
ACCGA046464GA046465
length1,0901,149
definitionB6Ng01-234N01.b B6Ng01-234N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,843,754 - 21,844,836)(21,938,444 - 21,939,609)
sequence
gaattccaacttgaattcattgcagtgaacctgctactgggagtacagca
ctgccagaatctgggctctgtcctctacgataaagtatgacctgaaggat
ggataccaagactgaaacctgaatcctcaggatggggaaacagaagggaa
caaccacataaaagatgactcatgtttctctttatgagagacagtaagac
cacaaggggaggcatcattaacatcagtggtcttgtttgtaatcatgggc
tttacaaacatgccccaccagacgccccagttcctgaacaatcactgaga
ggtttattatttgtgaagaaatgccaaggctaagtttgttcccaactaag
ttgtaatttacattaatccatttatactattctatgtctgccacatagct
agttatacctcctcagtttcacatgtctgacttcttccaattcctggctg
gtaatctcccgtgcctgactctttcccagagtttttctctctctctctct
ctgccggatgtcccaccttcaaatcctgcctcagcttaattggccatcag
attttcattgacaggtgatactaccccagtgtacacaagagattatccct
acacatgttggtcacaggaattatgacgatgttacagatagcactgaaga
cagagaaagcagtggtggctgtgggttgctggtgtcaatggtgtcttttc
agagtcctcagggctggacctcgacttgtcattatgcatctggacatcag
tggtggtgcatctctgatgtgcaggggtgagacccatgggagcccttcct
ctgaaagccattgatgatgaggttgaacattttgtcaactaggggagatc
tagttatgacttccagaattattagaaaaaaatgtgaagaaaaagaaaca
ttgctttctaaactttgactataggcattttctcagctccacctggtggt
aattcagagaaactttagtcacataaattagcatcaagtgctcagggtct
gacttgtttctgtgataacattaataagagatcaatgggttttctctaga
ttatggagtctaggacagggaaactagtactttaatccaa

gaattcacaacagacaggcaggggcctctactctctcagcttatgccttc
cccttttcccccactttagtctagtgataaatgatgtagaatgtctcaga
gagagagaaaattatgcccgatataaaaagtggttgaaaaagctgattac
agagtcattagcccctgtgggctcattttattgctataaagtcatcgttc
aaatagacatatatttagcttctttggccttcttttacgttaagcaaagt
aaccttagacaaaaaccgagaaccagagttcaaacatccgatttttagtg
atgtgacaggcaatttactaaattaggaaagcccaaagaggcagaggcac
acagcttgtgtgtgtcagcttgtgttcatcacatgccgtgtgtgcggggg
acatgtctagcaacacatagtccacgagagacacttaagatccaaaggca
gtgagatatgtgatatgcgtaatatgtcataaacaggttaaggggctagg
tgtagaataaaagccagtacaaaacaaaatctttttaaattcaaatctgg
ctggggagaacgggtttttttttcctctaggtaattcacatattttatgg
gaacataccttttggtttactgtgaaacctgtatgtgttcattctgtaac
tattgggcaattaagatttgtctgttctctaatgggttctggaagtttga
aatgtttagactgtaagttccatctaagtggtggctttgagatcatactc
tgcgtgacatctgtcattgatgttgacagatgtgatagccgtcctccccc
atgacccacatccctacattaacatgctcaagaatcagctgggaaagcct
actacaggttccagcccccttcatctgaggtggctaggctctctccagca
tcccctgaagtgagatcagctggaagcctactatagactccagccccctt
catctgaggtggctaggctctctccagcatcccctgaagtacgtgactca
ccctactacttgtttcacccctctgctgtcatataaatttggatttttct
tagagtctcttaattttttttttttttagtatacagcaaacatgaatttc
ttaacatgtcactgcctaactgcatcactatcgtcgctcttcacacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21843754_21844836
seq2: B6Ng01-234N01.b_47_1136

seq1  GAATTCCAACTTGAATTCATTGCAGTGAACCTGCTACTGGGAGTACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTGAATTCATTGCAGTGAACCTGCTACTGGGAGTACAGCA  50

seq1  CTGCCAGAATCTGGGCTCTGTCCTCTACGATAAAGTATGACCTGAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAATCTGGGCTCTGTCCTCTACGATAAAGTATGACCTGAAGGAT  100

seq1  GGATACCAAGACTGAAACCTGAATCCTCAGGATGGGGAAACAGAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCAAGACTGAAACCTGAATCCTCAGGATGGGGAAACAGAAGGGAA  150

seq1  CAACCACATAAAAGATGACTCATGTTTCTCTTTATGAGAGACAGTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATAAAAGATGACTCATGTTTCTCTTTATGAGAGACAGTAAGAC  200

seq1  CACAAGGGGAGGCATCATTAACATCAGTGGTCTTGTTTGTAATCATGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGGAGGCATCATTAACATCAGTGGTCTTGTTTGTAATCATGGGC  250

seq1  TTTACAAACATGCCCCACCAGACGCCCCAGTTCCTGAACAATCACTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACATGCCCCACCAGACGCCCCAGTTCCTGAACAATCACTGAGA  300

seq1  GGTTTATTATTTGTGAAGAAATGCCAAGGCTAAGTTTGTTCCCAACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTATTTGTGAAGAAATGCCAAGGCTAAGTTTGTTCCCAACTAAG  350

seq1  TTGTAATTTACATTAATCCATTTATACTATTCTATGTCTGCCACATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTACATTAATCCATTTATACTATTCTATGTCTGCCACATAGCT  400

seq1  AGTTATACCTCCTCAGTTTCACATGTCTGACTTCTTCCAATTCCTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACCTCCTCAGTTTCACATGTCTGACTTCTTCCAATTCCTGGCTG  450

seq1  GTAATCTCCCGTGCCTGACTCTTTCCCAGAGTTTTTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTCCCGTGCCTGACTCTTTCCCAGAGTTTTTCTCTCTCTCTCTCT  500

seq1  CTGCCGGATGTCCCACCTTCAAATCCTGCCTCAGCTTAATTGGCCATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGATGTCCCACCTTCAAATCCTGCCTCAGCTTAATTGGCCATCAG  550

seq1  ATTTTCATTGACAGGTGATACTACCCCAGTGTACACAAGAGATTATCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTGACAGGTGATACTACCCCAGTGTACACAAGAGATTATCCCT  600

seq1  ACACATGTTGGTCACAGGAATTATGACGATGTTACAGATAGCACTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTGGTCACAGGAATTATGACGATGTTACAGATAGCACTGAAGA  650

seq1  CAGAGAAAGCAGTGGTGGCTGTGGGTTGCTGGTGTCAATGGTGTCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGCAGTGGTGGCTGTGGGTTGCTGGTGTCAATGGTGTCTTTTC  700

seq1  AGAGTCCTCAGGGCTGGACCTCGACTTGTCATTATGCATCTGGACATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTCAGGGCTGGACCTCGACTTGTCATTATGCATCTGGACATCAG  750

seq1  TGGTGGTGCATCTCTGATGTGCAGGGGTGAGACCCATGGGAGCCCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCATCTCTGATGTGCAGGGGTGAGACCCATGGGAGCCCTTCCT  800

seq1  CTGAAAGCCATTGATGATGAGGTTGAACATTTTGTCAACTAGGGGAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCCATTGATGATGAGGTTGAACATTTTGTCAACTAGGGGAGATC  850

seq1  TAGTTATGACTTCCAGAATTATTAGAAAAAAATGTGAAGAAAAAGAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGACTTCCAGAATTATTAGAAAAAAATGTGAAGAAAAAGAAACA  900

seq1  TTGC-TTCTAAACTTTGACTATAGGCATTTTCTCAGCTCCAC--TGTGGT  947
      |||| |||||||||||||||||||||||||||||||||||||   |||||
seq2  TTGCTTTCTAAACTTTGACTATAGGCATTTTCTCAGCTCCACCTGGTGGT  950

seq1  AATTCAGAGAAACTTTAGTCACAT-AATTAGCATCAAGTGCCCA-GGTCT  995
      |||||||||||||||||||||||| |||||||||||||||| || |||||
seq2  AATTCAGAGAAACTTTAGTCACATAAATTAGCATCAAGTGCTCAGGGTCT  1000

seq1  GACTTGTTTCTGTGATAACATAATAAAGAGATCAAT-GGTTTTCTCTAGA  1044
      ||||||||||||||||||||| |  ||||||||||| |||||||||||||
seq2  GACTTGTTTCTGTGATAACATTAATAAGAGATCAATGGGTTTTCTCTAGA  1050

seq1  TTATGGAGTCTAGGACA-GGAAACTAGGTACTTT-ATCCAA  1083
      ||||||||||||||||| |||||||| ||||||| ||||||
seq2  TTATGGAGTCTAGGACAGGGAAACTA-GTACTTTAATCCAA  1090


seq1: chr18_21938444_21939609
seq2: B6Ng01-234N01.g_65_1213 (reverse)

seq1  AATG-GTGAAGA--GGCGATAGTGGAATGGCAGTATGAGCAAGTTACAGT  47
      |||| |||||||  | ||||||||  || ||||  | ||  ||| ||| |
seq2  AATGTGTGAAGAGCGACGATAGTG--AT-GCAG--TTAGGCAGTGACA-T  44

seq1  GATAAGAAATTCATGGTTTTCCTGTATAACTAAAAAAAAAAAAAAATAAA  97
      | |||||||||||||  ||| |||||| ||| ||||||||||||||| ||
seq2  GTTAAGAAATTCATG--TTTGCTGTAT-ACT-AAAAAAAAAAAAAATTAA  90

seq1  GAGAATTCTTAAAAGAAAAAAATCAAAATTTATATGAACAGCAAGAGGGT  147
      ||| | |||   |||  ||||||| ||||||||||| ||||||   ||||
seq2  GAG-ACTCT---AAG--AAAAATCCAAATTTATATG-ACAGCAGAGGGGT  133

seq1  GAAACAAAGTAGTTAGGGTGAGTTCACGTACTTCAGGGGATGCTGGAGAG  197
      ||||| |||||| ||||||||| |||||||||||||||||||||||||||
seq2  GAAAC-AAGTAG-TAGGGTGAG-TCACGTACTTCAGGGGATGCTGGAGAG  180

seq1  AGCCTAGCCACCTCAGATGAAGGGGGCTGGAGTCTATAGTAGGCTTCCCA  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCTAGCCACCTCAGATGAAGGGGGCTGGAGTCTATAGTAGGCTT-CCA  229

seq1  GCTGATCTCACTTCAGGGGATGCTGGAGAGAGCCTAGCCACCTCAGATGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCACTTCAGGGGATGCTGGAGAGAGCCTAGCCACCTCAGATGA  279

seq1  AGGGGGCTGGAACCTGTAGTAGGC-TTCCCAGCTGATTCTTGAGCATGTT  346
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGGGCTGGAACCTGTAGTAGGCTTTCCCAGCTGATTCTTGAGCATGTT  329

seq1  AATGTAGGGATGTGGGTCATGGGGGAGGACGGCTATCACATCTGTCAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGGATGTGGGTCATGGGGGAGGACGGCTATCACATCTGTCAACA  379

seq1  TCAATGACAGATGTCACGCAGAGTATGATCTCAAAGCCACCACTTAGATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACAGATGTCACGCAGAGTATGATCTCAAAGCCACCACTTAGATG  429

seq1  GAACTTACAGTCTAAACATTTCAAACTTCCAGAACCCATTAGAGAACAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACAGTCTAAACATTTCAAACTTCCAGAACCCATTAGAGAACAGA  479

seq1  CAAATCTTAATTGCCCAATAGTTACAGAATGAACACATACAGGTTTCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTAATTGCCCAATAGTTACAGAATGAACACATACAGGTTTCACA  529

seq1  GTAAACCAAAAGGTATGTTCCCATAAAATATGTGAATTACCTAGAGGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAAAGGTATGTTCCCATAAAATATGTGAATTACCTAGAGGAAA  579

seq1  AAAAAACCCGTTCTCCCCAGCCAGATTTGAATTTAAAAAGATTTTGTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCGTTCTCCCCAGCCAGATTTGAATTTAAAAAGATTTTGTTTT  629

seq1  GTACTGGCTTTTATTCTACACCTAGCCCCTTAACCTGTTTATGACATATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCTTTTATTCTACACCTAGCCCCTTAACCTGTTTATGACATATT  679

seq1  ACGCATATCACATATCTCACTGCCTTTGGATCTTAAGTGTCTCTCGTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATATCACATATCTCACTGCCTTTGGATCTTAAGTGTCTCTCGTGGA  729

seq1  CTATGTGTTGCTAGACATGTCCCCCGCACACACGGCATGTGATGAACACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTGCTAGACATGTCCCCCGCACACACGGCATGTGATGAACACA  779

seq1  AGCTGACACACACAAGCTGTGTGCCTCTGCCTCTTTGGGCTTTCCTAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACACACAAGCTGTGTGCCTCTGCCTCTTTGGGCTTTCCTAATT  829

seq1  TAGTAAATTGCCTGTCACATCACTAAAAATCGGATGTTTGAACTCTGGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTGCCTGTCACATCACTAAAAATCGGATGTTTGAACTCTGGTT  879

seq1  CTCGGTTTTTGTCTAAGGTTACTTTGCTTAACGTAAAAGAAGGCCAAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTTTTTGTCTAAGGTTACTTTGCTTAACGTAAAAGAAGGCCAAAGA  929

seq1  AGCTAAATATATGTCTATTTGAACGATGACTTTATAGCAATAAAATGAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATATATGTCTATTTGAACGATGACTTTATAGCAATAAAATGAGC  979

seq1  CCACAGGGGCTAATGACTCTGTAATCAGCTTTTTCAACCACTTTTTATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGGCTAATGACTCTGTAATCAGCTTTTTCAACCACTTTTTATAT  1029

seq1  CGGGCATAATTTTCTCTCTCTCTGAGACATTCTACATCATTTATCACTAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATAATTTTCTCTCTCTCTGAGACATTCTACATCATTTATCACTAG  1079

seq1  ACTAAAGTGGGGGAAAAGGGGAAGGCATAAGCTGAGAGAGTAGAGGCCCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTGGGGGAAAAGGGGAAGGCATAAGCTGAGAGAGTAGAGGCCCC  1129

seq1  TGCCTGTCTGTTGTGAATTC  1166
      ||||||||||||||||||||
seq2  TGCCTGTCTGTTGTGAATTC  1149


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