BAC Information

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BAC

Clone NameB6Ng01-235K03
Chromosome18 (Build37)
Map Location 46,262,676 - 46,406,009
singlet/doubletdoublet
Overlap geneTrim36, LOC100042905, Pggt1b
Upstream geneLOC225457, LOC100042900, Kcnn2
Downstream geneCcdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235K03.bB6Ng01-235K03.g
ACCGA047059GA047060
length1,023914
definitionB6Ng01-235K03.b B6Ng01-235K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,262,676 - 46,263,541)(46,405,241 - 46,406,009)
sequence
gaattctcagtggagaatctagaagccagaagtacatggacagacattct
atagactcttaagagagcaaaggtgccagctcatattactatacccaata
aaactttcaatcagagtagatggaaaaataaaaccataatattattattc
cacaataaaatccaaatttaagcaatatctatccacattgaccagcaagt
aagtgggaatatccaggtggtggtagcacacacctttaatctcggcactt
gggagtagaggtaggcatatctctgaattcaagaccagcctggtccacag
tgagtttgagggcagcctggacgacatagagactctgcctctaaagccaa
tcagtcaatcagtaaaggggatatttcatactagtaacttaacagcacac
ctaaaatctctgaaacaaaagaagaaatcacattcaaaaggaatagatga
caaaaaaaatcaccctcatgcctgaaatcaatcaaatagaaacaaaaaaa
aaaatacaaagaatcaaggaaacaaagggttggttctttaagaaaatcat
attgacaagcccttatttaaattaactaaaaagtcaagagaggatatcca
aattaacaaaactagagatgagaagagtcgcataacaatggatgcggagg
aaatctagagaatcataaagaaatattttaaaaccctatattccaccaga
ttgaaaagatccttaaaaagtagataattggccaggcggtggtggtgcac
gcctttagtcccagcacttgggaggcagagacgggcggatttctgagttc
gaggccagcctggtctacaaagtgagttccaggacagccaagactataca
gagaaaccctgtctctaaaaaccaaaacaaaacaaaaaaaaagaagatat
tttttcttgatatatattactaaagttaaatcaaaggtcagataagcaat
ttaacagacctaataacctctagcaaaataaaagcaataattaaaagtcc
tcccccccccaagaaaaatgggg
gaattcagttctcaggacccacatgggagaagaggagaacctttgacctc
taaatgtgcacccaggcacctacccatggctacatacaaaataaaaatca
taaacattgtttgcgacaggtttaaggtatgggtagtataaagggagggt
aaattgttaagttctattagtgtgtatgcatctctccacatccccaatac
ttagcaatgtttatttatttcatgtatgaaagtaaggcaggtgttctgag
tgggtcctagccaaggagttacttggctcatttaaaatgtcaggattatt
agctgtgatgtcagggttattagctttgacttaagctgtgttctagtttg
cttttctattgctgtaatattactttgacaaaggcaacttgaggaggaaa
aggtttatttggcttgtacaactaggcttatacactatcgagaaaagtca
gttaggcttgctctctggcttgcattgtcttacactaaagctagcttttt
atacagctcaggatcacctgcctagtgatgttactaaccagagtgggcca
agccctcctacattcagcaggaatcaagacagtgccccacaaacatggtc
acaggtcagtttgaactggacctttctgtaactgaggttctctcttcaca
agtgattctcaagtacttcacattgatacaggacactgagttctgagggg
aacaagagagacttctaagttaaaaaaaaattctcaaaaccaaattcatc
aatacattaaaaccattgctcaagggcttgctcaagcccaaagtgtggct
ggttggttgaatgtttgctagcatgttggagccctgaatttgatctctag
cacaacataaaccagatgtggttggtgatgcatgcttacagtcccaccct
cataaacagtgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46262676_46263541
seq2: B6Ng01-235K03.b_48_913

seq1  GAATTCTCAGTGGAGAATCTAGAAGCCAGAAGTACATGGACAGACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGGAGAATCTAGAAGCCAGAAGTACATGGACAGACATTCT  50

seq1  ATAGACTCTTAAGAGAGCAAAGGTGCCAGCTCATATTACTATACCCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCTTAAGAGAGCAAAGGTGCCAGCTCATATTACTATACCCAATA  100

seq1  AAACTTTCAATCAGAGTAGATGGAAAAATAAAACCATAATATTATTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAATCAGAGTAGATGGAAAAATAAAACCATAATATTATTATTC  150

seq1  CACAATAAAATCCAAATTTAAGCAATATCTATCCACATTGACCAGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAATCCAAATTTAAGCAATATCTATCCACATTGACCAGCAAGT  200

seq1  AAGTGGGAATATCCAGGTGGTGGTAGCACACACCTTTAATCTCGGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAATATCCAGGTGGTGGTAGCACACACCTTTAATCTCGGCACTT  250

seq1  GGGAGTAGAGGTAGGCATATCTCTGAATTCAAGACCAGCCTGGTCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGAGGTAGGCATATCTCTGAATTCAAGACCAGCCTGGTCCACAG  300

seq1  TGAGTTTGAGGGCAGCCTGGACGACATAGAGACTCTGCCTCTAAAGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAGGGCAGCCTGGACGACATAGAGACTCTGCCTCTAAAGCCAA  350

seq1  TCAGTCAATCAGTAAAGGGGATATTTCATACTAGTAACTTAACAGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAATCAGTAAAGGGGATATTTCATACTAGTAACTTAACAGCACAC  400

seq1  CTAAAATCTCTGAAACAAAAGAAGAAATCACATTCAAAAGGAATAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCTCTGAAACAAAAGAAGAAATCACATTCAAAAGGAATAGATGA  450

seq1  CAAAAAAAATCACCCTCATGCCTGAAATCAATCAAATAGAAACAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAATCACCCTCATGCCTGAAATCAATCAAATAGAAACAAAAAAA  500

seq1  AAAATACAAAGAATCAAGGAAACAAAGGGTTGGTTCTTTAAGAAAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAGAATCAAGGAAACAAAGGGTTGGTTCTTTAAGAAAATCAT  550

seq1  ATTGACAAGCCCTTATTTAAATTAACTAAAAAGTCAAGAGAGGATATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAGCCCTTATTTAAATTAACTAAAAAGTCAAGAGAGGATATCCA  600

seq1  AATTAACAAAACTAGAGATGAGAAGAGTCGCATAACAATGGATGCGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAACTAGAGATGAGAAGAGTCGCATAACAATGGATGCGGAGG  650

seq1  AAATCTAGAGAATCATAAAGAAATATTTTAAAACCCTATATTCCACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGAGAATCATAAAGAAATATTTTAAAACCCTATATTCCACCAGA  700

seq1  TTGAAAAGATCCTTAAAAAGTAGATAATTGGCCAGGCGGTGGTGGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGATCCTTAAAAAGTAGATAATTGGCCAGGCGGTGGTGGTGCAC  750

seq1  GCCTTTAGTCCCAGCACTTGGGAGGCAGAGACGGGCGGATTTCTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGTCCCAGCACTTGGGAGGCAGAGACGGGCGGATTTCTGAGTTC  800

seq1  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGACTATACA  850

seq1  GAGAAACCCTGTCTCT  866
      ||||||||||||||||
seq2  GAGAAACCCTGTCTCT  866

seq1: chr18_46405241_46406009
seq2: B6Ng01-235K03.g_66_834 (reverse)

seq1  GCAATGGTTTTAATGTATTGATGAATTTGGTTTTGAGAATTTTTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTTTTAATGTATTGATGAATTTGGTTTTGAGAATTTTTTTTTAA  50

seq1  CTTAGAAGTCTCTCTTGTTCCCCTCAGAACTCAGTGTCCTGTATCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGTCTCTCTTGTTCCCCTCAGAACTCAGTGTCCTGTATCAATGT  100

seq1  GAAGTACTTGAGAATCACTTGTGAAGAGAGAACCTCAGTTACAGAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTTGAGAATCACTTGTGAAGAGAGAACCTCAGTTACAGAAAGGT  150

seq1  CCAGTTCAAACTGACCTGTGACCATGTTTGTGGGGCACTGTCTTGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAAACTGACCTGTGACCATGTTTGTGGGGCACTGTCTTGATTCC  200

seq1  TGCTGAATGTAGGAGGGCTTGGCCCACTCTGGTTAGTAACATCACTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGTAGGAGGGCTTGGCCCACTCTGGTTAGTAACATCACTAGGC  250

seq1  AGGTGATCCTGAGCTGTATAAAAAGCTAGCTTTAGTGTAAGACAATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATCCTGAGCTGTATAAAAAGCTAGCTTTAGTGTAAGACAATGCAA  300

seq1  GCCAGAGAGCAAGCCTAACTGACTTTTCTCGATAGTGTATAAGCCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGCAAGCCTAACTGACTTTTCTCGATAGTGTATAAGCCTAGTT  350

seq1  GTACAAGCCAAATAAACCTTTTCCTCCTCAAGTTGCCTTTGTCAAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCCAAATAAACCTTTTCCTCCTCAAGTTGCCTTTGTCAAAGTAA  400

seq1  TATTACAGCAATAGAAAAGCAAACTAGAACACAGCTTAAGTCAAAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGCAATAGAAAAGCAAACTAGAACACAGCTTAAGTCAAAGCTAA  450

seq1  TAACCCTGACATCACAGCTAATAATCCTGACATTTTAAATGAGCCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGACATCACAGCTAATAATCCTGACATTTTAAATGAGCCAAGTA  500

seq1  ACTCCTTGGCTAGGACCCACTCAGAACACCTGCCTTACTTTCATACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGCTAGGACCCACTCAGAACACCTGCCTTACTTTCATACATGA  550

seq1  AATAAATAAACATTGCTAAGTATTGGGGATGTGGAGAGATGCATACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAACATTGCTAAGTATTGGGGATGTGGAGAGATGCATACACAC  600

seq1  TAATAGAACTTAACAATTTACCCTCCCTTTATACTACCCATACCTTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAACTTAACAATTTACCCTCCCTTTATACTACCCATACCTTAAAC  650

seq1  CTGTCGCAAACAATGTTTATGATTTTTATTTTGTATGTAGCCATGGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCAAACAATGTTTATGATTTTTATTTTGTATGTAGCCATGGGTAG  700

seq1  GTGCCTGGGTGCACATTTAGAGGTCAAAGGTTCTCCTCTTCTCCCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGTGCACATTTAGAGGTCAAAGGTTCTCCTCTTCTCCCATGTG  750

seq1  GGTCCTGAGAACTGAATTC  769
      |||||||||||||||||||
seq2  GGTCCTGAGAACTGAATTC  769