BAC Information

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BAC

Clone NameB6Ng01-235O01
Chromosome18 (Build37)
Map Location 37,455,936 - 37,457,023
singlet/doubletsinglet
Overlap genePcdhb2
Upstream gene0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1
Downstream genePcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O01.bB6Ng01-235O01.g
ACCGA047243GA047244
length6191,083
definitionB6Ng01-235O01.b B6Ng01-235O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtctttattacaatggatattagcccagaaacttagaatat
ccaagatacaatttgcaaaacacaagaaaatcaaggagaaggaagaccaa
agcgtggatacttcattcctccttagaatagggaacaaaatactcatgga
aggaattacagagacaaagtttggagctgacacggaaggatggaccatcc
agagattgctccacctggggatccatctcatattcagccaccaaacacag
acattattgcacatgccagcaagattttgctgaaaggtccctgatatagc
tatctctgatgaggctatgccagtgcctggcaaatacagaagtggatgct
catagtcatctattggatggaacacagggtccccaagagaggagctagag
aaaatacccaaggagctgtaggggtctgcaaccctataggtggaacaaca
atatgaactaaccagtacccccagagctcatatctctagctgcatatgta
gcagaagatggcctagtcggccatcactgggaagagaggccccttggtat
tgcaaactttatatgtcccagtacaggagaacgccagggccaagaagtgg
gagtgggtgggtaggggag
gaattcaaaactattcctgtaactagggtttgtatcattctctgtctctg
aactctgaaggaggaaattggggatgattggtttcaagaacttgaaatct
ggggtcccagtatctccagtcaggcacacttcatattgataactctggga
cagggtccccgcgccgccaacatctaccaggtgggctggaaagtggcctt
cgggcatagagcagccacccagcgaggtggctctggccctcctgcacagc
cttacccccacgaacagcagtacagacaggaggaagagagaagacacaga
ggccaaggcaatgaccaggtagagtgttagtatgtcctcatcttgggcag
ggtcgcgggccacctctggcagaggcaagtagggttgagagaagccatcc
accactagcacctgcaatgtgacgctggcagaatgcggagggtctccatt
gtccttgaccagcagcagcagcctgtgtttgggtgcatctcgctcactca
gcagcctggtggtgcgcacctcgccattgtgcgcccacacgctgaacagc
ccgggctccgtggccttgagcagctggaatgacaaccaggcattctggcc
agagtcgcggtccactgccaccaccttggtgactaggtatccgggctctg
ccgccctgggcagcagctcagtgcagggcacagaagagttctgtagtggg
tagagcacgaagggcgcattatcattgtcatccagcaccaccacacgcac
cagagtctggctgctgagtgccggtgatcctccatctgtggcgcccacat
ggaacttgaaggtctgctggtcctcgtagtccagcgccctgagcgcgaac
agctgcccgttgtctgcattgatggagaccagggaatggaggggccaact
gtgggtcttggggcggcagcagcgagtaggtgatgtgggcattagagcct
gagtctgaatctgtggcactgatggtgcctatgtgcagggcagggcctgt
tgtttttctcggacatatggtataggaagttggtgaggcgggcgtgtcgt
gatgtcagaatcctgtactattatgggtgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37455936_37457023
seq2: B6Ng01-235O01.g_65_1147 (reverse)

seq1  AGCACA-CCATAATAGTACAGGTGTCTGACATCAACGACAACGCCCCCGC  49
      |||||| |||||||||||||||  ||||||||| ||||||   | |||||
seq2  AGCACACCCATAATAGTACAGGATTCTGACATC-ACGACA---CGCCCGC  46

seq1  CTTCACCCAAACCTCCTATACCATATTTGTCCGAG-AAAACAACA-GCCC  97
      | |||||  ||| ||||||||||||  |||||||| ||||||||| ||||
seq2  C-TCACC--AACTTCCTATACCATA--TGTCCGAGAAAAACAACAGGCCC  91

seq1  TGCCCTGCACATAGGCACCATCAGTGCCACAGATTCAGACTCAGGCTCTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCACATAGGCACCATCAGTGCCACAGATTCAGACTCAGGCTCTA  141

seq1  ATGCCCACATCACCTACTCGCTGCTGCCGCCCCAAGACCCACAGTTGG-C  196
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCCCACATCACCTACTCGCTGCTGCCGCCCCAAGACCCACAGTTGGCC  191

seq1  CCTCCATTCCCTGGTCTCCATCAATGCAGACAACGGGCAGCTGTTCGCGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTCCCTGGTCTCCATCAATGCAGACAACGGGCAGCTGTTCGCGC  241

seq1  TCAGGGCGCTGGACTACGAGGACCAGCAGACCTTCAAGTTCCATGTGGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCGCTGGACTACGAGGACCAGCAGACCTTCAAGTTCCATGTGGGC  291

seq1  GCCACAGATGGAGGATCACCGGCACTCAGCAGCCAGACTCTGGTGCGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGATGGAGGATCACCGGCACTCAGCAGCCAGACTCTGGTGCGTGT  341

seq1  GGTGGTGCTGGATGACAATGATAATGCGCCCTTCGTGCTCTACCCACTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTGGATGACAATGATAATGCGCCCTTCGTGCTCTACCCACTAC  391

seq1  AGAACTCTTCTGTGCCCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTCTGTGCCCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGCCC  441

seq1  GGATACCTAGTCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGCCAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCTAGTCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGCCAGAA  491

seq1  TGCCTGGTTGTCATTCCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTTGTCATTCCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCA  541

seq1  GCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGGCTGCTGAGTGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGGCTGCTGAGTGAG  591

seq1  CGAGATGCACCCAAACACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGCACCCAAACACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGA  641

seq1  CCCTCCGCATTCTGCCAGCGTCACATTGCAGGTGCTAGTGGTGGATGGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCGCATTCTGCCAGCGTCACATTGCAGGTGCTAGTGGTGGATGGCT  691

seq1  TCTCTCAACCCTACTTGCCTCTGCCAGAGGTGGCCCGCGACCCTGCCCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAACCCTACTTGCCTCTGCCAGAGGTGGCCCGCGACCCTGCCCAA  741

seq1  GATGAGGACATACTAACACTCTACCTGGTCATTGCCTTGGCCTCTGTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGACATACTAACACTCTACCTGGTCATTGCCTTGGCCTCTGTGTC  791

seq1  TTCTCTCTTCCTCCTGTCTGTACTGCTGTTCGTGGGGGTAAGGCTGTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCTCCTGTCTGTACTGCTGTTCGTGGGGGTAAGGCTGTGCA  841

seq1  GGAGGGCCAGAGCCACCTCGCTGGGTGGCTGCTCTATGCCCGAAGGCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCAGAGCCACCTCGCTGGGTGGCTGCTCTATGCCCGAAGGCCAC  891

seq1  TTTCCAGCCCACCTGGTAGATGTTGGCGGCGCGGGGACCCTGTCCCAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCCACCTGGTAGATGTTGGCGGCGCGGGGACCCTGTCCCAGAG  941

seq1  TTATCAATATGAAGTGTGCCTGACTGGAGATACTGGGACCCCAGATTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATATGAAGTGTGCCTGACTGGAGATACTGGGACCCCAGATTTCA  991

seq1  AGTTCTTGAAACCAATCATCCCCAATTTCCTCCTTCAGAGTTCAGAGACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGAAACCAATCATCCCCAATTTCCTCCTTCAGAGTTCAGAGACA  1041

seq1  GAGAATGATACAAACCCTAGTTACAGGAATAGTTTTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGATACAAACCCTAGTTACAGGAATAGTTTTGAATTC  1083