BAC Information

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BAC

Clone NameB6Ng01-236G08
Chromosome18 (Build37)
Map Location 56,980,127 - 57,152,516
singlet/doubletdoublet
Overlap geneMarch3, C330018D20Rik
Upstream geneLOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1
Downstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236G08.bB6Ng01-236G08.g
ACCGA047625GA047626
length1,1461,182
definitionB6Ng01-236G08.b B6Ng01-236G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,980,127 - 56,981,281)(57,151,331 - 57,152,516)
sequence
gaattcacctgtactctgagggtcctgttatgtttcttaacctggtctca
aactcatgatcttcctgccttactctatccagtgttgggattgtgggtgt
gtttcatcatgtcagttggactcttcccagactcatttctatgggttcct
taaaatggctccagtggggttttgttgttattttaaaaataaggctaaaa
aagaaaggaagaaaggaaggaagaaaggaaaaaagaaagagagaaagaaa
gaaggaaagcaagcaatcagtcaagcaagcaagtaaagaaggtagcaacc
tgagatcacgttatcgcttagccacttcagtttatatcctggattcttgt
gaaccatgaaattggccaatagagtctcttcctagattctggaacttatt
tcatgcctacctcgatgcaaagcatttacaaatcttttcacagaacctca
gcactcttcaatgagcttgtcagcttctccacttctccacttgcaccttt
gcggggacctgcctagctctccatgtatgccttgacttcggaacttgcaa
aggttccctgtaccacggtgcagaggagcatctcctattctcaacctggc
ctttttcctggcgagggtgcgtccgcattctccctggtcctcctgggaag
tcacccactaaagcctggtagaagcgttccagtgcattgtcactttacaa
agagggctgacacccacaagaagagagcccttaaacttcttcagttccac
agaggaaaggtcctgagtcaaacatcaggtctggccctttctctgtctag
tcagcactatcaaaattaacgactaaagcttcttaactcaattcagcctg
tttgacagaaagggaagtaactttatattgatactgaattgcataattat
cccaaacaaaacaacttaataatgcacagaggtccacattttaaaatttg
catcccgttttccttcaaaacagacagaaaaaatcacattattgatggca
cagtgtgagcgtattttttctacattcatacactattcatttcccttttt
ctagtgctataaatactgtagtctttactgctcgagggaaaaaataacag
ccatgcccccacagagctcatcattggcttatagggctagaaaaaa
gaattctgggaaatcaaactcaggtcaccaggcttgcacagcaagtgcct
ttacccatgagccaactcaccagctcaatgttggggacttaatatatgaa
tattggctttctacggttcaccagcagctggaactatgattcccatggta
acggtaaggatcttacagtctcctgtgtgcactaaatgactagggaagga
ttccagttgatatctgtattggttacgtttctgttactgtgctggaagac
cttgagcagagacaagtttaggaataaagagtttatttgggcttacagat
tccatagtggcggggaggcatggcacccggtctccgtccaaagcaggaag
ctgaaagatgacaacttcaaccaccgacagcaaagagagtgaattagaag
tggggcaaggcaatcgactctcaaagcccttccccagtgggatgcttcct
tcagccaggctctacctcctaacagttctttaacctctctgaactacacc
atcaactgggaaggaagtgcttaaatacctgagcctgtggggaccacaca
agttctgtttggcattcgagtctattattgtcaccatataacactgcctc
taaaagctgatgagctgtgcaaagacaggaggctgagtgacaaccgtagg
tatttataggatcctgacatgtatagaagggtctagatgcctggttttct
tagaagcctgctttaaaacacatgataagcataagtcctgtagctgtgga
tctatttacatttgttcttttgttttctatagaaaatctctctaagcaac
agaaaagtctgcaatccatgcctgcataggcacatacctgccctggctaa
ttatttaagagatattcaaagtgcttgtaattaacagtgtgtatgggcct
atgccaaacatgagcccaacatctctaacagtttgtaacccacctggtct
ccaggcccaacacaaggtatagccgctgtccccagttaccttctttgggg
ggttgtagtaaaaagaagggtttgcagtgggtagtgaatccattaaacac
tcagtcagctccctgggactctgtgacatgcacgacagttttcttctcgc
aatattacacttcctttttgcagagattattcacttcctgaatgtatttt
tggggttctgctatagaaaccaatctacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56980127_56981281
seq2: B6Ng01-236G08.b_47_1192

seq1  GAATTCACCTGTACTCTGAGGGTCCTGTTATGTTTCTTAACCTGGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTACTCTGAGGGTCCTGTTATGTTTCTTAACCTGGTCTCA  50

seq1  AACTCATGATCTTCCTGCCTTACTCTATCCAGTGTTGGGATTGTGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGATCTTCCTGCCTTACTCTATCCAGTGTTGGGATTGTGGGTGT  100

seq1  GTTTCATCATGTCAGTTGGACTCTTCCCAGACTCATTTCTATGGGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCATGTCAGTTGGACTCTTCCCAGACTCATTTCTATGGGTTCCT  150

seq1  TAAAATGGCTCCAGTGGGGTTTTGTTGTTATTTTAAAAATAAGGCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCTCCAGTGGGGTTTTGTTGTTATTTTAAAAATAAGGCTAAAA  200

seq1  AAGAAAGGAAGAAAGGAAGGAAGAAAGGAAAAAAGAAAGAGAGAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAGAAAGGAAGGAAGAAAGGAAAAAAGAAAGAGAGAAAGAAA  250

seq1  GAAGGAAAGCAAGCAATCAGTCAAGCAAGCAAGTAAAGAAGGTAGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGCAAGCAATCAGTCAAGCAAGCAAGTAAAGAAGGTAGCAACC  300

seq1  TGAGATCACGTTATCGCTTAGCCACTTCAGTTTATATCCTGGATTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCACGTTATCGCTTAGCCACTTCAGTTTATATCCTGGATTCTTGT  350

seq1  GAACCATGAAATTGGCCAATAGAGTCTCTTCCTAGATTCTGGAACTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGAAATTGGCCAATAGAGTCTCTTCCTAGATTCTGGAACTTATT  400

seq1  TCATGCCTACCTCGATGCAAAGCATTTACAAATCTTTTCACAGAACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTACCTCGATGCAAAGCATTTACAAATCTTTTCACAGAACCTCA  450

seq1  GCACTCTTCAATGAGCTTGTCAGCTTCTCCACTTCTCCACTTGCACCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTCAATGAGCTTGTCAGCTTCTCCACTTCTCCACTTGCACCTTT  500

seq1  GCGGGGACCTGCCTAGCTCTCCATGTATGCCTTGACTTCGGAACTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGACCTGCCTAGCTCTCCATGTATGCCTTGACTTCGGAACTTGCAA  550

seq1  AGGTTCCCTGTACCACGGTGCAGAGGAGCATCTCCTATTCTCAACCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTGTACCACGGTGCAGAGGAGCATCTCCTATTCTCAACCTGGC  600

seq1  CTTTTTCCTGGCGAGGGTGCGTCCGCATTCTCCCTGGTCCTCCTGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTGGCGAGGGTGCGTCCGCATTCTCCCTGGTCCTCCTGGGAAG  650

seq1  TCACCCACTAAAGCCTGGTAGAAGCGTTCCAGTGCATTGTCACTTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACTAAAGCCTGGTAGAAGCGTTCCAGTGCATTGTCACTTTACAA  700

seq1  AGAGGGCTGACACCCACAAGAAGAGAGCCCTTAAACTTCTTCAGTTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGACACCCACAAGAAGAGAGCCCTTAAACTTCTTCAGTTCCAC  750

seq1  AGAGGAAAGGTCCTGAGTCAAACATCAGGTCTGGCCCTTTCTCTGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGGTCCTGAGTCAAACATCAGGTCTGGCCCTTTCTCTGTCTAG  800

seq1  TCAGCACTATCAAAATTAACGACTAAGGCTTCTTAACTCAATTCAGCCTG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGCACTATCAAAATTAACGACTAAAGCTTCTTAACTCAATTCAGCCTG  850

seq1  TTTGACAGAAAGGGAAGTAACTTTATATTGATACTGAATTGCATAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGAAAGGGAAGTAACTTTATATTGATACTGAATTGCATAATTAT  900

seq1  CCCAAACAAAACAACTTAATAATGCACAGAGGTCCACATTTTAAAATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAAAACAACTTAATAATGCACAGAGGTCCACATTTTAAAATTTG  950

seq1  CATCCCGTTTTCCTTCAAAACAGACAGAAAAAATCACATTATTGATGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCCCGTTTTCCTTCAAAACAGACAGAAAAAATCACATTATTGATGGC-  999

seq1  ACAGTGTGAGCGTATTTTTTCTACATTCATAACACTATTCATTTCCCTTT  1050
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGTGTGAGCGTATTTTTTCTACATTCAT-ACACTATTCATTTCCCTTT  1048

seq1  TTCTAAGTGCTTAATAAATACTGTAGGTCTTTACTGCCTTCGAGGGAGAA  1100
      |||| ||||||  |||||||||||| |||||||||||  |||||||| ||
seq2  TTCT-AGTGCT--ATAAATACTGTA-GTCTTTACTGC--TCGAGGGAAAA  1092

seq1  AATAACAGCCATGCCCCCACAGAGCTCATTCATTTGCTTTATGGGCTAAA  1150
      |||||||||||||||||||||||||||| ||||| ||||   |||||| |
seq2  AATAACAGCCATGCCCCCACAGAGCTCA-TCATTGGCTTATAGGGCTAGA  1141

seq1  AAAAA  1155
      |||||
seq2  AAAAA  1146

seq1: chr18_57151331_57152516
seq2: B6Ng01-236G08.g_64_1245 (reverse)

seq1  TGTTG-AGATTGGTTTTCTAATAGCAGAAAACCCCCAAAAAAACACTTCA  49
      ||||| ||||||| ||||| |||||||||   ||||||||| ||| ||||
seq2  TGTTGTAGATTGG-TTTCT-ATAGCAGAA---CCCCAAAAATACA-TTCA  44

seq1  GAAAAGTGAATTAATCCTCCTGCAAAAA-GAAGTGTAATTAATTGCGAG-  97
      |  ||||||| |||||   ||||||||| ||||||||||  |||||||| 
seq2  G-GAAGTGAA-TAATC--TCTGCAAAAAGGAAGTGTAAT--ATTGCGAGA  88

seq1  AGAAAACTGGCCGTGCATGTCAACAGAGT-CCAGGGAGCTGACTGAGTGT  146
      |||||||| | |||||||||| ||||||| ||||||||||||||||||||
seq2  AGAAAACT-GTCGTGCATGTC-ACAGAGTCCCAGGGAGCTGACTGAGTGT  136

seq1  TT-ATGGATTCACTACCCACTGCAAACCCCTTCTTTTACCTACA--CCCC  193
      || ||||||||||||||||||||||| ||||||||||  |||||  ||||
seq2  TTAATGGATTCACTACCCACTGCAAA-CCCTTCTTTTTACTACAACCCCC  185

seq1  CAAAGAAGGTAACTGGGGACAGCGGCTATACC-TGTG-TGGGCCTGGAGA  241
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CAAAGAAGGTAACTGGGGACAGCGGCTATACCTTGTGTTGGGCCTGGAGA  235

seq1  CCAGGTGGGTTACAAACTGTTAGAGATGTTGGGCTCATGTTTGGCATAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGGTTACAAACTGTTAGAGATGTTGGGCTCATGTTTGGCATAGG  285

seq1  -CCATACACACTGTTAATTACAAGCACTTTGAATATCTCTTAAATAATTA  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACACACTGTTAATTACAAGCACTTTGAATATCTCTTAAATAATTA  335

seq1  GCCAGGGCAGGTATGTGCCTATGCAGGCATGGATTGCAGACTTTTCTGTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCAGGTATGTGCCTATGCAGGCATGGATTGCAGACTTTTCTGTT  385

seq1  GCTTAGAGAGATTTTCTATAG-AAACAAAAGAACAAATGTAAATAGATCC  439
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTAGAGAGATTTTCTATAGAAAACAAAAGAACAAATGTAAATAGATCC  435

seq1  ACAGCTACAGGACTTATGCTTATCATGTGTTTTAAAGCAGGCTTCTAAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAGGACTTATGCTTATCATGTGTTTTAAAGCAGGCTTCTAAGA  485

seq1  AAACCAGGCATCTAGACCCTTCTATACATGTCAGGATCCTATAAATACCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGCATCTAGACCCTTCTATACATGTCAGGATCCTATAAATACCT  535

seq1  ACGGTTGTCACTCAGCCTCCTGTCTTTGCACAGCTCATCAGCTTTTAGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTGTCACTCAGCCTCCTGTCTTTGCACAGCTCATCAGCTTTTAGAG  585

seq1  GCAGTGTTATATGGTGACAATAATAGACTCGAATGCCAAACAGAACTTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTATATGGTGACAATAATAGACTCGAATGCCAAACAGAACTTGT  635

seq1  GTGGTCCCCACAGGCTCAGGTATTTAAGCACTTCCTTCCCAGTTGATGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCCACAGGCTCAGGTATTTAAGCACTTCCTTCCCAGTTGATGGT  685

seq1  GTAGTTCAGAGAGGTTAAAGAACTGTTAGGAGGTAGAGCCTGGCTGAAGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAGAGAGGTTAAAGAACTGTTAGGAGGTAGAGCCTGGCTGAAGG  735

seq1  AAGCATCCCACTGGGGAAGGGCTTTGAGAGTCGATTGCCTTGCCCCACTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCCACTGGGGAAGGGCTTTGAGAGTCGATTGCCTTGCCCCACTT  785

seq1  CTAATTCACTCTCTTTGCTGTCGGTGGTTGAAGTTGTCATCTTTCAGCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCACTCTCTTTGCTGTCGGTGGTTGAAGTTGTCATCTTTCAGCTT  835

seq1  CCTGCTTTGGACGGAGACCGGGTGCCATGCCTCCCCGCCACTATGGAATC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGGACGGAGACCGGGTGCCATGCCTCCCCGCCACTATGGAATC  885

seq1  TGTAAGCCCAAATAAACTCTTTATTCCTAAACTTGTCTCTGCTCAAGGTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCCAAATAAACTCTTTATTCCTAAACTTGTCTCTGCTCAAGGTC  935

seq1  TTCCAGCACAGTAACAGAAACGTAACCAATACAGATATCAACTGGAATCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACAGTAACAGAAACGTAACCAATACAGATATCAACTGGAATCC  985

seq1  TTCCCTAGTCATTTAGTGCACACAGGAGACTGTAAGATCCTTACCGTTAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGTCATTTAGTGCACACAGGAGACTGTAAGATCCTTACCGTTAC  1035

seq1  CATGGGAATCATAGTTCCAGCTGCTGGTGAACCGTAGAAAGCCAATATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATCATAGTTCCAGCTGCTGGTGAACCGTAGAAAGCCAATATTC  1085

seq1  ATATATTAAGTCCCCAACATTGAGCTGGTGAGTTGGCTCATGGGTAAAGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGTCCCCAACATTGAGCTGGTGAGTTGGCTCATGGGTAAAGG  1135

seq1  CACTTGCTGTGCAAGCCTGGTGACCTGAGTTTGATTTCCCAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTGTGCAAGCCTGGTGACCTGAGTTTGATTTCCCAGAATTC  1182