BAC Information

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BAC

Clone NameB6Ng01-236P05
Chromosome18 (Build37)
Map Location 70,395,695 - 70,526,793
singlet/doubletdoublet
Overlap gene2310002L13Rik
Upstream geneEG225681, Tcf4, Ccdc68, Rab27b
Downstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236P05.bB6Ng01-236P05.g
ACCGA048042GA048043
length5921,131
definitionB6Ng01-236P05.b B6Ng01-236P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,526,196 - 70,526,793)(70,395,695 - 70,396,844)
sequence
acatccataataagctcactgtgtccctcttcacaatagctaggaaatgc
atgactatcaactgatgaacaaataatagctttctcaatattcatatcca
taatcgacctctactttcaaccctgatagggagagcttctgtttttggat
taatggtagtgagttcagtgacctatgattgttaaagttgttgaagacaa
gtggctattgcgcattcagtcctaaacaaaacattcataccacccaggga
tgtaaaggcaaatagctacagagaaggttgctaatgttttcttttgagca
ggacacagccactttaaccataagttcatagtgcctgcactgtacaagaa
aagcctgttgtggatgggggaatgggctcagaggtcctcctcttctacct
gtggaaatgatgattcagttgtgatggatgaatataataaagtaatttat
ggggtggcaagtgggtaggggtggaaaaaaagagggtaaatgataaaaat
aatcctgatgtattatttacaggtatgaaatcgacaaagaataaatttta
ttaataaaaaagtacaaaacaagggagcattaaaaagaatgc

gaattctctttaaggtaattagcaggaagcaataacttggagtttcttgt
tccgtttataagagcattcacagcttccttctaggtcagaagcaaatcta
gggacaaatatacccagtgtcacagggtctgtgcatacactgttctgaca
aatcgaactgaacttcagagaaggtgtatactcacacaaaagacttgaca
cgcattaccaaccactttagcttcttctctcagttcttatatcacgtgtt
tctttagtttgttttctattgtgagatctcttaaagacaattgaaatcca
tcttgtccgatttgtacaaaagcaatatgaaaaaagaaaactcacgcaag
acaaacataaacagaaaaactgactaaaaaaacttttgccagatgtttaa
gatagcgaacgctcatatgaataattttaaatgcctcattgccactagac
ttctgtggataagtgttaatgagataaagaccagaatgaatgatcggaaa
gcatgatgggtttagcatttgttgagttggtcactagaactagataagct
ttagataatattgtgggaaagcttgcctgctgaatgtgcacgccttactc
agtactgtcatatcattttttttaaatgttctgaggttagatattttaac
agtttaagacagatcccacaactctgcggactattgaataatttattaaa
tcattaaagcctaaagcaaaggaaaaatctaagatccatttcaatctctt
atttattaagaacagaaacctgatcatctcagataaccggaaataggatg
cccaccaccacacaaatatttaaccccaaaagtccaactcccaaccatga
tgctgggatactcaagccaaataagtgagcctccttccgtattgtcgcat
tctgcacattgttaagcacatgagagagtctccccacagctttcccatca
ctcaaaatggctcagagatacagaacatattgtattctttgtattatcct
ttactgacacatatttaaaacataaagctgtctttactcatatgcaaagc
aatttaaactattatgaagatacctaatctagcaattaaacttcttaatc
gtgtataatagaaataacttcgatattctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70526196_70526793
seq2: B6Ng01-236P05.b_43_640 (reverse)

seq1  GCTTTCTTTCTAATGCTCCCTTGTTTTGTACTTTTTTATTAATAAAATTT  50
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTTTAATGCTCCCTTGTTTTGTACTTTTTTATTAATAAAATTT  50

seq1  ATTCTTTGTCGATTTCATACCTGTACATAATACATCAGGATTATTTTTAT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCTTTGTCGATTTCATACCTGTAAATAATACATCAGGATTATTTTTAT  100

seq1  CATTTACCCTCTTTTTTTCCACCCCTACCCACTTGCCACCCCATAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCCTCTTTTTTTCCACCCCTACCCACTTGCCACCCCATAAATTA  150

seq1  CTTTATTATATTCATCCATCACAACTGAATCATCATTTCCACAGGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATATTCATCCATCACAACTGAATCATCATTTCCACAGGTAGAA  200

seq1  GAGGAGGACCTCTGAGCCCATTCCCCCATCCACAACAGGCTTTTCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACCTCTGAGCCCATTCCCCCATCCACAACAGGCTTTTCTTGTA  250

seq1  CAGTGCAGGCACTATGAACTTATGGTTAAAGTGGCTGTGTCCTGCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGCACTATGAACTTATGGTTAAAGTGGCTGTGTCCTGCTCAAA  300

seq1  AGAAAACATTAGCAACCTTCTCTGTAGCTATTTGCCTTTACATCCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATTAGCAACCTTCTCTGTAGCTATTTGCCTTTACATCCCTGGG  350

seq1  TGGTATGAATGTTTTGTTTAGGACTGAATGCGCAATAGCCACTTGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGAATGTTTTGTTTAGGACTGAATGCGCAATAGCCACTTGTCTTC  400

seq1  AACAACTTTAACAATCATAGGTCACTGAACTCACTACCATTAATCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTAACAATCATAGGTCACTGAACTCACTACCATTAATCCAAAA  450

seq1  ACAGAAGCTCTCCCTATCAGGGTTGAAAGTAGAGGTCGATTATGGATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTCTCCCTATCAGGGTTGAAAGTAGAGGTCGATTATGGATATG  500

seq1  AATATTGAGAAAGCTATTATTTGTTCATCAGTTGATAGTCATGCATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAGAAAGCTATTATTTGTTCATCAGTTGATAGTCATGCATTTCC  550

seq1  TAGCTATTGTGAAGAGGGACACAGTGAGCTTATTATGGATGTGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTGTGAAGAGGGACACAGTGAGCTTATTATGGATGTGAATTC  598


seq1: chr18_70395695_70396844
seq2: B6Ng01-236P05.g_63_1193

seq1  GAATTCTCTTTAAGGTAATTAGCAGGAAGCAATAACTTGGAGTTTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAGGTAATTAGCAGGAAGCAATAACTTGGAGTTTCTTGT  50

seq1  TCCGTTTATAAGAGCATTCACAGCTTCCTTCTAGGTCAGAAGCAAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTATAAGAGCATTCACAGCTTCCTTCTAGGTCAGAAGCAAATCTA  100

seq1  GGGACAAATATACCCAGTGTCACAGGGTCTGTGCATACACTGTTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAATATACCCAGTGTCACAGGGTCTGTGCATACACTGTTCTGACA  150

seq1  AATCGAACTGAACTTCAGAGAAGGTGTATACTCACACAAAAGACTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAACTGAACTTCAGAGAAGGTGTATACTCACACAAAAGACTTGACA  200

seq1  CGCATTACCAACCACTTTAGCTTCTTCTCTCAGTTCTTATATCACGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTACCAACCACTTTAGCTTCTTCTCTCAGTTCTTATATCACGTGTT  250

seq1  TCTTTAGTTTGTTTTCTATTGTGAGATCTCTTAAAGACAATTGAAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTTTGTTTTCTATTGTGAGATCTCTTAAAGACAATTGAAATCCA  300

seq1  TCTTGTCCGATTTGTACAAAAGCAATATGAAAAAAGAAAACTCACGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCGATTTGTACAAAAGCAATATGAAAAAAGAAAACTCACGCAAG  350

seq1  ACAAACATAAACAGAAAAACTGACTAAAAAAACTTTTGCCAGATGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATAAACAGAAAAACTGACTAAAAAAACTTTTGCCAGATGTTTAA  400

seq1  GATAGCGAACGCTCATATGAATAATTTTAAATGCCTCATTGCCACTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCGAACGCTCATATGAATAATTTTAAATGCCTCATTGCCACTAGAC  450

seq1  TTCTGTGGATAAGTGTTAATGAGATAAAGACCAGAATGAATGATCGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGATAAGTGTTAATGAGATAAAGACCAGAATGAATGATCGGAAA  500

seq1  GCATGATGGGTTTAGCATTTGTTGAGTTGGTCACTAGAACTAGATAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGGGTTTAGCATTTGTTGAGTTGGTCACTAGAACTAGATAAGCT  550

seq1  TTAGATAATATTGTGGGAAAGCTTGCCTGCTGAATGTGCACGCCTTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAATATTGTGGGAAAGCTTGCCTGCTGAATGTGCACGCCTTACTC  600

seq1  AGTACTGTCATATCATTTTTTTTAAATGTTCTGAGGTTAGATATTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTCATATCATTTTTTTTAAATGTTCTGAGGTTAGATATTTTAAC  650

seq1  AGTTTAAGACAGATCCCACAACTCTGCGGACTATTGAATAATTTATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGACAGATCCCACAACTCTGCGGACTATTGAATAATTTATTAAA  700

seq1  TCATTAAAGCCTAAAGCAAAGGAAAAATCTAAGATCCATTTCAATCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAGCCTAAAGCAAAGGAAAAATCTAAGATCCATTTCAATCTCTT  750

seq1  ATTTATTAAGAACAGAAACCTGATCATCTCAGATAACCGGAAATAGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAGAACAGAAACCTGATCATCTCAGATAACCGGAAATAGGATG  800

seq1  CCCACCACCACACAAATATTTAACCCCAAAAGTCCAACTCCCAACCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCACACAAATATTTAACCCCAAAAGTCCAACTCCCAACCATGA  850

seq1  TGCTGGGATACTCAAGCCAAATAAAGTGAGCCTCCTTCCGTATTGTCGCA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTGGGATACTCAAGCCAAAT-AAGTGAGCCTCCTTCCGTATTGTCGCA  899

seq1  TTCTGCAACATTGTTAAGCACATGAGAGAAGTCTCCCCACAGC-TTCCCA  949
      |||||| ||||||||||||||||||||| |||||||||||||| ||||||
seq2  TTCTGC-ACATTGTTAAGCACATGAGAG-AGTCTCCCCACAGCTTTCCCA  947

seq1  TCACTCAAAATGGCTCAGAGAATACAGAACATATTTGTA-TCTTTGTATT  998
      |||||||||||||||||||| |||||||||||| ||||| ||||||||||
seq2  TCACTCAAAATGGCTCAGAG-ATACAGAACATA-TTGTATTCTTTGTATT  995

seq1  ATCCTTTACTGACAACATATTTAAAACATAAAGCTGTCTTTACTCATATT  1048
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  ATCCTTTACTGAC-ACATATTTAAAACATAAAGCTGTCTTTACTCATA-T  1043

seq1  GCAAAGCAAATTTAAACTATATTGGAAGAATACTTAAATCTAGCAAAATT  1098
      ||||||| |||||||||||| |  |||| |||| | ||||||||  ||||
seq2  GCAAAGC-AATTTAAACTAT-TATGAAG-ATACCT-AATCTAGC--AATT  1087

seq1  AAACTTTCTTATATCGTTGTATAATAGAAATAAAACTTCAGAATTATTCT  1148
      |||| |||||| |||| ||||||||||||||  |||||| ||  ||||||
seq2  AAAC-TTCTTA-ATCG-TGTATAATAGAAAT--AACTTC-GA--TATTCT  1129

seq1  GA  1150
      ||
seq2  GA  1131


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