BAC Information

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BAC

Clone NameB6Ng01-237B13
Chromosome18 (Build37)
Map Location 76,247,722 - 76,421,920
singlet/doubletdoublet
Overlap geneZbtb7c, LOC668184, Smad2
Upstream geneDym, LOC628356, EG667777, Smad7, Gm672, 4833419G08Rik
Downstream geneLOC668188, EG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237B13.bB6Ng01-237B13.g
ACCGA048148GA048149
length1,184571
definitionB6Ng01-237B13.b B6Ng01-237B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,420,733 - 76,421,920)(76,247,722 - 76,248,295)
sequence
gaattcttctgaaaatcaagaagactcaaatcttgggcaaatatagtttt
gaaaataaaatctttgtcaacgctctgggcaattaacttttctaaggcca
tctctctttattaacctcttcaaattaacacttgatgaagattttcacaa
acaccaagtttttcacatttttaggacttcaatctattctcaaaagattt
agcaaaaatcttttgagactatatagttaagtggaagtatgtttgcctaa
cataaatagactctgggtttaaacaccccacccctcaacagtaaggagtg
gaggacacttacaaataaaatatatacacacccaatgttcacagagtttt
acactttcattaagaataaagaaagaaaagtgatcaaacttgtagaaaaa
agctttactcaacacctcatctgcttgaagaaatccctttaatgccatct
atcttaatacccttttcatctttatctaatgatgcatacagtaaaattaa
gcatatttttcttcctatatcagtgtcagtctgtaatatcttttatttta
tgtacagtaacaggcttgtaagagaactcttgcaagcatcaacctcaggt
gtcagctcttattccctgaggaaatgatgggctgattcctctacggtgcc
acttactttcctcactatgaaaaccacctgtagttttaagacttgtgtgt
atggtatctgatgaggtcagcagtaagttactatgtaagcacatttttgt
acttaccagaattaatgtcttttcatttgcttatttttatgcacttggca
ccaaattttcctattctatgccagtctttcaggtaaacagtcagctgact
gttgttaactctgcatgcagcctcgcatcctagagtgtagtagtatagta
gtgtagtagtgcccccattcccgtccccatcatcctgatctactgcatct
attgtttcatggagtgtttccaagaagagagaaagatgccagtaagattc
ggttgaacacaattttatacactattattacttttatagtagcatactgc
ctctgtgcaatgatttaagaatatggtactacctttattttcctaaacca
caacaacagccaaccaatcctcagataaggttatttaagctttccgttag
ctagcataaggaaggatacccaggaggcctagaa
tcttccagcaacagcagcctcctccacaagcctcgggaggtccctttcac
tgagggggtttaacttttgcctgtcacagggaagtctgtgaattgttact
ccaagtgaccctgggcagtttatttagctaattgtcaagcacgcaggctg
aactatagaatcaccttcttccacacaaatgatttccaacactaatctgc
tgacgatggcggaacagtgggaaagggagaacttgatgagaaaaacctgg
gagatagtatccgactcccccaaacccgtgtcccgggggagtgtgctgat
ggaaagagtgtgggaaggcgcaaggggattgtcctgccaagtgtgtgtgt
gtatgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtctctatgtga
gtgtatgtgcgtgtctgtgtgtgtttatgtgtctgtgtgtatgtctgtgt
gtgtctgtgcgtgtctctatgtgtctgtgttgtgcatgtgtatgcatgtg
tgtacatctgtatgcatgttttgttttgttttttctgtgtgtgtgtgttt
gtgtgactgtgtgattgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_76420733_76421920
seq2: B6Ng01-237B13.b_51_1234 (reverse)

seq1  TTCTAGG-CTC--TGGTATCCTTCCTTTATGGCTA-CTAAGGAAAAGGTT  46
      ||||||| |||   ||||||||||| |||| |||| |||| | |||| ||
seq2  TTCTAGGCCTCCTGGGTATCCTTCC-TTAT-GCTAGCTAACGGAAAGCTT  48

seq1  AAAATAAC--TATCTGAGATTTGTTTTGCTGTTGTTGTTGTTTAAGGAAA  94
       |||||||  ||||||||  ||| || ||||||||||| |||| ||||||
seq2  -AAATAACCTTATCTGAGGATTGGTTGGCTGTTGTTGTGGTTT-AGGAAA  96

seq1  ATTAAGGTAGTACCATA-TCTTAAATCATTGCAACAAGAGGCAGTATTGC  143
      || |||||||||||||| |||||||||||||||   |||||||||| |||
seq2  ATAAAGGTAGTACCATATTCTTAAATCATTGCA--CAGAGGCAGTA-TGC  143

seq1  TACTTATAAAAGTAAATAATAGTGTATAAAATTGTGTTTCAACCGAATCT  193
      ||| ||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TAC-TATAAAAGT-AATAATAGTGTATAAAATTGTG-TTCAACCGAATCT  190

seq1  TACTGGCATCTTTCTCTCTTTCTTGGAAACACTCCATGAAACAATAGATG  243
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACTGGCATCTTTCTCTC-TTCTTGGAAACACTCCATGAAACAATAGATG  239

seq1  CAGTAGATCAGGATGATGGGGACGGGAATGGGGGCACTACTACACTACTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATCAGGATGATGGGGACGGGAATGGGGGCACTACTACACTACTA  289

seq1  TACTACTACACTCTAGGATGCGAGGCTGCATGCAGAGTTAACAACAGTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTACACTCTAGGATGCGAGGCTGCATGCAGAGTTAACAACAGTCA  339

seq1  GCTGACTGTTTACCTGAAAGACTGGCATAGAATAGGAAAATTTGGTGCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTTTACCTGAAAGACTGGCATAGAATAGGAAAATTTGGTGCCA  389

seq1  AGTGCATAAAAATAAGCAAATGAAAAGACATTAATTCTGGTAAGTACAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATAAAAATAAGCAAATGAAAAGACATTAATTCTGGTAAGTACAAA  439

seq1  AATGTGCTTACATAGTAACTTACTGCTGACCTCATCAGATACCATACACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTACATAGTAACTTACTGCTGACCTCATCAGATACCATACACA  489

seq1  CAAGTCTTAAAACTACAGGTGGTTTTCATAGTGAGGAAAGTAAGTGGCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTAAAACTACAGGTGGTTTTCATAGTGAGGAAAGTAAGTGGCAC  539

seq1  CGTAGAGGAATCAGCCCATCATTTCCTCAGGGAATAAGAGCTGACACCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGGAATCAGCCCATCATTTCCTCAGGGAATAAGAGCTGACACCTG  589

seq1  AGGTTGATGCTTGCAAGAGTTCTCTTACAAGCCTGTTACTGTACATAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGCTTGCAAGAGTTCTCTTACAAGCCTGTTACTGTACATAAAA  639

seq1  TAAAAGATATTACAGACTGACACTGATATAGGAAGAAAAATATGCTTAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATATTACAGACTGACACTGATATAGGAAGAAAAATATGCTTAAT  689

seq1  TTTACTGTATGCATCATTAGATAAAGATGAAAAGGGTATTAAGATAGATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTATGCATCATTAGATAAAGATGAAAAGGGTATTAAGATAGATG  739

seq1  GCATTAAAGGGATTTCTTCAAGCAGATGAGGTGTTGAGTAAAGCTTTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAAGGGATTTCTTCAAGCAGATGAGGTGTTGAGTAAAGCTTTTTT  789

seq1  CTACAAGTTTGATCACTTTTCTTTCTTTATTCTTAATGAAAGTGTAAAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTTTGATCACTTTTCTTTCTTTATTCTTAATGAAAGTGTAAAAC  839

seq1  TCTGTGAACATTGGGTGTGTATATATTTTATTTGTAAGTGTCCTCCACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACATTGGGTGTGTATATATTTTATTTGTAAGTGTCCTCCACTC  889

seq1  CTTACTGTTGAGGGGTGGGGTGTTTAAACCCAGAGTCTATTTATGTTAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTGAGGGGTGGGGTGTTTAAACCCAGAGTCTATTTATGTTAGG  939

seq1  CAAACATACTTCCACTTAACTATATAGTCTCAAAAGATTTTTGCTAAATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACTTCCACTTAACTATATAGTCTCAAAAGATTTTTGCTAAATC  989

seq1  TTTTGAGAATAGATTGAAGTCCTAAAAATGTGAAAAACTTGGTGTTTGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAATAGATTGAAGTCCTAAAAATGTGAAAAACTTGGTGTTTGTG  1039

seq1  AAAATCTTCATCAAGTGTTAATTTGAAGAGGTTAATAAAGAGAGATGGCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCATCAAGTGTTAATTTGAAGAGGTTAATAAAGAGAGATGGCC  1089

seq1  TTAGAAAAGTTAATTGCCCAGAGCGTTGACAAAGATTTTATTTTCAAAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGTTAATTGCCCAGAGCGTTGACAAAGATTTTATTTTCAAAAC  1139

seq1  TATATTTGCCCAAGATTTGAGTCTTCTTGATTTTCAGAAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCCCAAGATTTGAGTCTTCTTGATTTTCAGAAGAATTC  1184

seq1: chr18_76247722_76248295
seq2: B6Ng01-237B13.g_69_645

seq1  GAATTCTCTTCCAGCAACAGCAGCCTCCTCCACAAGCCTCGGGAGGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGCAACAGCAGCCTCCTCCACAAGCCTCGGGAGGTCCC  50

seq1  TTTCACTGAGGGGGTTTAACTTTTGCCTGTCACAGGGAAGTCTGTGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAGGGGGTTTAACTTTTGCCTGTCACAGGGAAGTCTGTGAATT  100

seq1  GTTACTCCAAGTGACCCTGGGCAGTTTATTTAGCTAATTGTCAAGCACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCCAAGTGACCCTGGGCAGTTTATTTAGCTAATTGTCAAGCACGC  150

seq1  AGGCTGAACTATAGAATCACCTTCTTCCACACAAATGATTTCCAACACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAACTATAGAATCACCTTCTTCCACACAAATGATTTCCAACACTA  200

seq1  ATCTGCTGACGATGGCGGAACAGTGGGAAAGGGAGAACTTGATGAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGACGATGGCGGAACAGTGGGAAAGGGAGAACTTGATGAGAAAA  250

seq1  ACCTGGGAGATAGTATCCGACTCCCCCAAACCCGTGTCCCGGGGGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGATAGTATCCGACTCCCCCAAACCCGTGTCCCGGGGGAGTGT  300

seq1  GCTGATGGAAAGAGTGTGGGAAGGCGCAAGGGGATTGTCCTGCCAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGAAAGAGTGTGGGAAGGCGCAAGGGGATTGTCCTGCCAAGTGT  350

seq1  GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTCTCT  400

seq1  ATGTGAGTGTATGTGCGTGTCTGTGTGTGTTTATGTGTCTGTGTGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTGTATGTGCGTGTCTGTGTGTGTTTATGTGTCTGTGTGTATGT  450

seq1  CTGTGTGTGTCTGTGCGTGTCTCTATGTGTCTGTGTTGTGCATGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTCTGTGCGTGTCTCTATGTGTCTGTGTTGTGCATGTGTATG  500

seq1  CATGTGTGTACATCTGTATGCATGTTTGTGTGTG---TGTCTGTGTGTGT  547
      |||||||||||||||||||||||||||   | ||   | |||||||||||
seq2  CATGTGTGTACATCTGTATGCATGTTTTGTTTTGTTTTTTCTGTGTGTGT  550

seq1  GTGTTTGTGTGACTGTGTGATTGTGTG  574
      |||||||||||||||||||||||||||
seq2  GTGTTTGTGTGACTGTGTGATTGTGTG  577