MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-238K09
Chromosome	18 (Build37)
Map Location	46,554,209 - 46,691,088
singlet/doublet	doublet
Overlap gene	LOC100042916, Mospd4, LOC100042204, Fem1c
Upstream gene	Kcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468
Downstream gene	Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Kcnn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140492 MGI:2153182
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28105 MGI:106264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042905 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Pggt1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225467 MGI:1917514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc112 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240261 MGI:1918800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 4 Proteins

name	EG225468 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225468 MGI:3647072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100042916 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Mospd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72076 MGI:1919326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 15 Proteins

name	LOC100042204 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Fem1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240263 MGI:2444737
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ticam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225471 MGI:3040056
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13664 MGI:95298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042226 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Cdo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12583 MGI:105925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67526 MGI:1914776
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ap3s1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11777 MGI:1337062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	4833403I15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74574 MGI:1921824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins

name	LOC666798 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Gm949 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381142 MGI:2685795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042241 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins pseudo : _no_value

name	Commd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69456 MGI:1916706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628438 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628438 MGI:3644923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 235 ESTs, 5 Proteins

name	LOC667120 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Sema6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20358 MGI:1203727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628477 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628477
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 262 ESTs, 6 Proteins pseudo : _no_value

name	9130209A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77668 MGI:1924918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Kcnn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131090 GeneID:140492 MGI:2153182
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 transcript_id : NM_080465.2

name	Trim36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254334 GeneID:28105 MGI:106264
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 36 transcript_id : NM_178872.3

name	LOC100042905 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269824 GeneID:100042905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100042905 transcript_id : XM_001479433.1

name	Pggt1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802404 GeneID:225467 MGI:1917514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein geranylgeranyltransferase type I, beta subunit transcript_id : NM_172627.2

name	Ccdc112 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269826 GeneID:240261 MGI:1918800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 4 Proteins product : coiled-coil domain containing 112 transcript_id : XM_140320.7

name	EG225468 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82996331 GeneID:225468 MGI:3647072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG225468 transcript_id : XM_140321.4

name	LOC100042916 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269828 GeneID:100042916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042916 transcript_id : XM_001479448.1

name	Mospd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269830 GeneID:72076 MGI:1919326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 15 Proteins product : motile sperm domain containing 4 transcript_id : XM_128948.6

name	Fem1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802716 GeneID:240263 MGI:2444737
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fem-1 homolog c (C.elegans) transcript_id : NM_173423.2

name	Ticam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328395 GeneID:225471 MGI:3040056
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor adaptor molecule 2 transcript_id : NM_173394.2

name	Eif1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802731 GeneID:13664 MGI:95298
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 1A transcript_id : NM_010120.4

name	LOC100042226 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269758 GeneID:100042226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100042226 transcript_id : XM_001477756.1

name	Cdo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130772 GeneID:12583 MGI:105925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine dioxygenase 1, cytosolic transcript_id : NM_033037.3

name	Atg12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386474 GeneID:67526 MGI:1914776
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 12 (yeast) transcript_id : NM_026217.2

name	Ap3s1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362739 GeneID:11777 MGI:1337062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor-related protein complex 3, sigma 1 subunit transcript_id : NM_009681.4

name	LOC100042950 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269832 GeneID:100042950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : similar to RNP particle component transcript_id : XM_001479502.1

name	4833403I15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404446 GeneID:74574 MGI:1921824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins product : RIKEN cDNA 4833403I15 gene transcript_id : XM_988298.1

name	Gm949 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119360324 GeneID:381142 MGI:2685795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 949, (NCBI) transcript_id : NM_001033446.2

name	Commd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130588 GeneID:69456 MGI:1916706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 10 transcript_id : NM_178377.4

name	EG628438 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404451 GeneID:628438 MGI:3644923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 235 ESTs, 5 Proteins product : predicted gene, EG628438 transcript_id : XM_893180.2

name	Sema6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67846118 GeneID:20358 MGI:1203727
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A transcript_id : NM_018744.2

name	9130209A04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404452 GeneID:77668 MGI:1924918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9130209A04 gene transcript_id : XM_488851.3

name	Kcnn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17978282 GeneID:140492 MGI:2153182
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015269 - calcium-activated potassium channel activity [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0016286 - small conductance calcium-activated potassium channel activity [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : small conductance calcium-activated potassium channel 2 product : small conductance calcium-activated potassium channel protein 2 protein_id : NP_536713.1

name	Trim36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254335 CCDS:CCDS29229.1 GeneID:28105 MGI:106264
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008061 - chitin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007340 - acrosome reaction [Evidence IMP]; GO:0006030 - chitin metabolism [Evidence IEA] codon_start : 1 note : acrosome RBCC protein product : haprin protein_id : NP_849203.2

name	LOC100042905 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269825 GeneID:100042905
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479483.1

name	Pggt1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369904 CCDS:CCDS29230.1 GeneID:225467 MGI:1917514
definition	GO_function : GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : geranylgeranyltransferase type I protein_id : NP_766215.1

name	Ccdc112 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269827 GeneID:240261 MGI:1918800
definition	codon_start : 1 product : similar to mutated in bladder cancer 1 protein_id : XP_140320.7

name	EG225468 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996332 GeneID:225468 MGI:3647072
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140321.4

name	LOC100042916 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269829 GeneID:100042916
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479498.1

name	Mospd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269831 GeneID:72076 MGI:1919326
definition	codon_start : 1 product : motile sperm domain containing 4 protein_id : XP_128948.6

name	Fem1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734132 CCDS:CCDS29231.1 GeneID:240263 MGI:2444737
definition	codon_start : 1 product : fem-1 homolog c protein_id : NP_775599.1

name	Ticam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734184 CCDS:CCDS29232.1 GeneID:225471 MGI:3040056
definition	GO_component : GO:0045323 - interleukin-1 receptor complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005149 - interleukin-1 receptor binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0001817 - regulation of cytokine production [Evidence IMP]; GO:0043122 - regulation of I-kappaB kinase/NF-kappaB cascade [Evidence ISS]; GO:0045357 - regulation of interferon-beta biosynthesis [Evidence ISS] codon_start : 1 note : TIR domain-containing adapter protein; Toll-interleukin I receptor domain (TIR)-containing adaptor molecule (TICAM) 2; TRIF-related adapter molecule TRAM; TRIF-related adaptor molecule product : toll-like receptor adaptor molecule 2 protein_id : NP_775570.1

name	Eif1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981781 CCDS:CCDS29233.1 GeneID:13664 MGI:95298
definition	GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : eukaryotic translation initiation factor 1A protein_id : NP_034250.2

name	LOC100042226 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269759 GeneID:100042226
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477806.1

name	Cdo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14719434 CCDS:CCDS29234.1 GeneID:12583 MGI:105925
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0017172 - cysteine dioxygenase activity [Evidence TAS]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA] GO_process : GO:0019452 - L-cysteine catabolism to taurine [Evidence TAS]; GO:0046439 - L-cysteine metabolism [Evidence IEA]; GO:0019530 - taurine metabolism [Evidence TAS] codon_start : 1 note : cytosolic cysteine dioxygenase 1 product : cysteine dioxygenase 1, cytosolic protein_id : NP_149026.1

name	Atg12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385722 GeneID:67526 MGI:1914776
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence ISS]; GO:0000045 - autophagic vacuole formation [Evidence IEA]; GO:0006914 - autophagy [Evidence TAS] [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : autophagy 12-like product : autophagy-related 12-like protein_id : NP_080493.1

name	Ap3s1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753078 CCDS:CCDS29236.1 GeneID:11777 MGI:1337062
definition	GO_component : GO:0030662 - coated vesicle membrane [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence TAS] GO_process : GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 note : adaptor-related protein complex AP-3, sigma 1 subunit product : adaptor-related protein complex 3, sigma 1 subunit protein_id : NP_033811.1

name	LOC100042950 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269833 GeneID:100042950
definition	codon_start : 1 product : similar to RNP particle component protein_id : XP_001479552.1

name	4833403I15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404447 GeneID:74574 MGI:1921824
definition	codon_start : 1 product : hypothetical protein LOC74574 protein_id : XP_993392.1

name	Gm949 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701959 CCDS:CCDS29237.1 GeneID:381142 MGI:2685795
definition	codon_start : 1 product : hypothetical protein LOC381142 protein_id : NP_001028618.1

name	Commd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30410016 CCDS:CCDS29238.1 GeneID:69456 MGI:1916706
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : COMM domain containing 10 protein_id : NP_848464.1

name	EG628438 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996341 GeneID:628438 MGI:3644923
definition	codon_start : 1 product : similar to CPN10-like protein protein_id : XP_898273.1

name	Sema6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67846119 GeneID:20358 MGI:1203727
definition	GO_component : GO:0030424 - axon [Evidence NAS]; GO:0016021 - integral to membrane [Evidence ISS] [Evidence IEA]; GO:0016020 - membrane [Evidence NAS] [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence NAS]; GO:0007411 - axon guidance [Evidence NAS]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence ISS]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence ISS] [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence ISS] codon_start : 1 product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein_id : NP_061214.2

name	9130209A04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996349 GeneID:77668 MGI:1924918
definition	codon_start : 1 product : hypothetical protein LOC77668 protein_id : XP_488851.2

name	LOC100042204 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042204
definition	number : 1 pseudo : _no_value

name	LOC666798 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666798
definition	number : 1 pseudo : _no_value

name	LOC667120 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667120
definition	number : 1 pseudo : _no_value

name	LOC667120 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667120
definition	number : 2 pseudo : _no_value

name	LOC100042241 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269760 GeneID:100042241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins product : similar to hCG1789329 pseudo : _no_value transcript_id : XR_033389.1

name	LOC628477 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269834 GeneID:628477
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 262 ESTs, 6 Proteins product : similar to ribosomal protein L6 pseudo : _no_value transcript_id : XR_034277.1

clone name	MSMg01-421K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194A24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-238K09.b	B6Ng01-238K09.g
ACC	GA049287	GA049288
length	642	1,093
definition	B6Ng01-238K09.b	B6Ng01-238K09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(46,554,209 - 46,554,850)	(46,690,005 - 46,691,088)
sequence	gaattcaaatgcagaaatcaggtttctactctcaacacctccatcctgga agcagctttcctgcttgcttatagaatggcggcaacccatcgagttattt ttgcggatcatttttagaaatgaggtggcctcgagaacggcttgggaatg aagggatgcgtggttggtggctcggcagcccttaaatagctgtggcacca tatgatactgggcctacactttatcaagccagtgcagttggaccactgaa ggcagagctgaggatttcatgtctcctgcagctgcttccttcatcatgac tttggtagaaaactgcttgaagaggctggcaagaagactgacagaggagg gcgggggacgaggggagagaatggggttgggaataaatatgagcaagtac agtgatacatatacaaaatagcataacaaaactgaaaagaaagaaagaaa gaaaaaagggggggggggaaccctgcatggttaaacagttaaaatattgg gaaggcaaactgagagaaattgatttgctctctgaaaattaaaaaaaaaa aatcttactgcgaccttggcatgtggattaatgagagagtgcttatctaa catatgcacgaccctgagttcaattcccagtacacacacaac	gaattctatagcagtcctagaagatttccttctcttcagagactaactta ataagacggaatcatgactgacatccacagaaactggccagaggactgag attcacaaatgtgatgtctcttgcttggaaaaacagagatagtgatctta tatgggccccggcctcaaacttagcaggcataacaatcatttctggaatt tactgaaagtgcacactttaattttattttcttaaaataataaaactact aaaagcatacattcagaaagagtgagtctgaatttccagggagcagcaac gcagaggccaagtctgccaccagaagtggagctttggtaagacaatagaa atatggttaggaggggtttgtaagagatttggtcagtcagactgcatacc aaatgagatgattaatagatactgaggacaattcctggtcctctcttgcc atctagaatggagttgaggctatgggattattggtaaggctggggattgt tggccctggctgatgggctagacatttgcataggcatgagggaccaatca gggtcgtggccagagatcaggataggaggaaagcctgaggctcaaactgc ctttcccagcagttctccgtgtgctggcagaagtctgagactgatagtag ccttttatctgggagtggatctggctgactctctcccttgtcttctgctt ctcccagcttcactgggcaactcctttaagctataaagaaccacaagatc agacccacagtcctcaagtgtatcttcagctctctgaagaaccctgaggt cctatagcagagaggctgggtcaatcttgggacgggctggcctgagggca aagctgattctgtagacattttagatcctttctcagtgttagagctgggg cttctgagggccccttgtaattagacagcaaaggaaagaaacatagcttt tatattggatacagatctctaccccatgattatgagaacattgattagcc accagatacaaagacgagtcagaagtccaagagaaattgccagaatttgg gtgagccaacctattaacctgcttgtcttaggtcattccaggg
quality values	Open. Hide. 58 26 19 22 58 29 17 45 54 34 31 62 29 62 62 62 18 31 41 38 62 49 54 62 62 62 62 62 62 62 62 56 41 30 44 47 42 62 62 62 62 59 43 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 42 49 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 56 56 56 62 47 47 56 62 56 62 56 62 54 56 56 47 56 62 56 56 51 62 54 62 62 62 62 62 39 62 54 54 56 56 47 47 56 62 62 62 62 62 62 56 56 51 51 62 62 62 51 62 56 56 56 62 56 56 47 62 56 62 62 56 62 62 62 56 56 56 56 56 56 56 56 56 56 54 43 20 18 13 19 12 11 33 42 42 31 35 38 47 27 31 24 17 22 13 24 33 24 29 31 42 31 22 43 24 28 34 34 25 28 28 23 29 25 35 41 42 46 29 39 20 52 31 42 20 22 29 34 11 42 25 34 36 39 39 34 33 39 26 26 35 37 26 39 41 39 27 32 52 52 33 42 42 50 37 35 28 34 37 39 37 19 19 27 50 33 13 39 21 34 25 30 35 21 18 13 19 42 40 14 10 19 13 13 15 34 25 35 32 20 34 29 46 25 32 54 46 43 50 34 19 16 11 9 13 11 34 52 37 28 22 19 9 19 9 37 29 31 29 22 25 53 40 43 28 37 24 32 35 38 15 19 7 10 9 13 12 17 15 13 11 25 9 10 11 14 19	Open. Hide. 62 47 43 38 62 62 62 56 62 54 62 21 15 9 13 21 23 24 18 20 20 32 32 25 32 56 56 62 62 49 62 62 62 62 62 62 59 59 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 49 49 59 41 56 28 28 32 31 27 44 56 59 46 62 62 59 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 59 59 62 54 59 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 54 58 53 58 58 52 58 58 58 58 58 58 58 54 54 49 48 58 54 58 58 49 46 39 39 54 54 54 58 58 58 54 58 58 54 58 54 58 58 58 58 58 54 38 58 58 58 58 58 54 35 58 58 58 49 43 58 58 54 54 42 58 58 58 58 58 52 49 54 52 52 58 58 58 58 53 42 51 52 58 58 51 41 58 58 54 37 58 58 42 33 51 36 54 58 51 50 52 58 58 58 58 51 51 58 58 47 45 39 53 42 33 28 35 49 52 29 58 39 36 53 38 58 39 24 30 41 58 43 40 39 58 54 58 58 26 58 46 58 40 37 58 58 51 50 54 40 44 49 50 58 43 58 43 30 50 50 41 39 51 53 53 53 33 33 41 46 58 53 52 52 51 58 49 38 42 39 51 41 34 40 38 53 53 58 29 38 28 40 51 39 32 50 50 50 50 34 44 50 45 49 49 49 37 41 49 49 54 54 51 46 28 45 49 50 47 32 49 40 54 54 24 35 38 50 19 50 52 49 47 51 42 54 39 33 35 52 33 49 24 19 33 45 53 40 40 51 32 34 38 54 47 38 32 41 49 26 33 34 33 35 34 54 51 30 32 33 37 52 37 41 32 54 37 30 31 31 47 42 33 39 51 51 32 31 34 38 24 52 27 32 33 53 45 33 27 32 31 24 53 24 47 47 29 53 29 45 32 36 35 45 31 17 29 32 21 34 32 27 33 32 33 32 31 29 30 38 43 34 38 32 31 30 42 37 33 33 30 13 46 27 27 28 39 29 42 28 26 36 39 32 32 29 32 31 30 18 34 16 21 16 51 22 36 22 47 27 26 33 30 27 20 26 27 33 32 40 19 31 14 11 40 12 15 24 26 31 10 9 25 31 29 14 37 31 31 16 28 29 24 31 31 30 18 10 10 26 21 41 15 11 7 31 25 19 35 48 46 31 27 6 24 20 12 14 29 38 31 32 32 26 29 10 18 30 16 15 19 16 30 18 21 27 31 46 46 37 9 8 6 9 23 20 29 8 16 17 13 13 13 19 16 11 11 23 25 36 9 10 29 8 17 16 12 19 11 6 38 31 6 15 8 44 25 9 18 44 31 9 6 8 6 8 14 32 43 48 33 23 21 6 5 6 9 7 20 11 17 12 11 4 13 32 32 34 25 17 11 18 6 25 15 6 10 18 19 11 10 14 12 15 33 17 11 19 12 10 31 6 6 6 5 20 12 14 16 6 6 5 20 5 5 3 11 17 31 10 27 19 4 6 3 3 6 16 19 16 9 7 9 32 11 7 23 11 14 9 10 22 5 6 21 13 11 8 17 15 13 7 9 27 20 7 34 18 9 27 18 13 10 16 7 5 6 13 6 7 18 19 11 12 25 5 8 8 4 5 12 13 16 7 20 12 18 8 25 4 1 1 6 9 5 7 9 13 16 6 7 12 18

Alignment Information

BAC End 1

BAC End 2

seq1: chr18_46554209_46554850
seq2: B6Ng01-238K09.b_44_685

seq1  GAATTCAAATGCAGAAATCAGGTTTCTACTCTCAACACCTCCATCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCAGAAATCAGGTTTCTACTCTCAACACCTCCATCCTGGA  50

seq1  AGCAGCTTTCCTGCTTGCTTATAGAATGGCGGCAACCCATCGAGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTCCTGCTTGCTTATAGAATGGCGGCAACCCATCGAGTTATTT  100

seq1  TTGCGGATCATTTTTAGAAATGAGGTGGCCTCGAGAACGGCTTGGGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGATCATTTTTAGAAATGAGGTGGCCTCGAGAACGGCTTGGGAATG  150

seq1  AAGGGATGCGTGGTTGGTGGCTCGGCAGCCCTTAAATAGCTGTGGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGCGTGGTTGGTGGCTCGGCAGCCCTTAAATAGCTGTGGCACCA  200

seq1  TATGATACTGGGCCTACACTTTATCAAGCCAGTGCAGTTGGACCACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACTGGGCCTACACTTTATCAAGCCAGTGCAGTTGGACCACTGAA  250

seq1  GGCAGAGCTGAGGATTTCATGTCTCCTGCAGCTGCTTCCTTCATCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTGAGGATTTCATGTCTCCTGCAGCTGCTTCCTTCATCATGAC  300

seq1  TTTGGTAGAAAACTGCTTGAAGAGGCTGGCAAGAAGACTGACAGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGAAAACTGCTTGAAGAGGCTGGCAAGAAGACTGACAGAGGAGG  350

seq1  GCGGGGGACGAGGGGAGAGAATGGGGTTGGGAATAAATATGAGCAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGACGAGGGGAGAGAATGGGGTTGGGAATAAATATGAGCAAGTAC  400

seq1  AGTGATACATATACAAAATAGCATAACAAAACTGAAAAGAAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACATATACAAAATAGCATAACAAAACTGAAAAGAAAGAAAGAAA  450

seq1  GAAAAAAGGGGGGGGGGGAACCCTGCATGGTTAAACAGTTAAAATATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGGGGGGGGGGAACCCTGCATGGTTAAACAGTTAAAATATTGG  500

seq1  GAAGGCAAACTGAGAGAAATTGATTTGCTCTCTGAAAATTAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAACTGAGAGAAATTGATTTGCTCTCTGAAAATTAAAAAAAAAA  550

seq1  AATCTTACTGCGACCTTGGCATGTGGATTAATGAGAGAGTGCTTATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACTGCGACCTTGGCATGTGGATTAATGAGAGAGTGCTTATCTAA  600

seq1  CATATGCACGACCCTGAGTTCAATTCCCAGTACACACACAAC  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACGACCCTGAGTTCAATTCCCAGTACACACACAAC  642

seq1: chr18_46690005_46691088
seq2: B6Ng01-238K09.g_65_1157 (reverse)

seq1  CCCTGG-ATGACATAAGACAAGCAGG-TAATAGGTT-GCTCA-CCAAATT  46
      |||||| ||||| ||||||||||||| ||||||||| ||||| |||||||
seq2  CCCTGGAATGACCTAAGACAAGCAGGTTAATAGGTTGGCTCACCCAAATT  50

seq1  CTGGCAATTTCTCTTGG--CTCTGACTCTGTCTTTGGTATCCTGGT-GCT  93
      |||||||||||||||||   |||||||| |||||| |||| ||||| |||
seq2  CTGGCAATTTCTCTTGGACTTCTGACTC-GTCTTT-GTAT-CTGGTGGCT  97

seq1  -ATC-ATGTTCTCATTATCATGGGGTAGAGATCTTGTATCC-ATATAAAA  140
       ||| |||||||||| ||||||||||||||||| ||||||| ||||||||
seq2  AATCAATGTTCTCATAATCATGGGGTAGAGATC-TGTATCCAATATAAAA  146

seq1  G-TATGTTTCTTTCCTTTGCTGTCTTATTTACAGGGGCCCTCAG-AGCCC  188
      | ||||||||||||||||||||||| |||   |||||||||||| |||||
seq2  GCTATGTTTCTTTCCTTTGCTGTCTAATTACAAGGGGCCCTCAGAAGCCC  196

seq1  CAGCTCTAACACTGAGAAAGGATCTAAAATGTCTACAGAATCAGCTTTGC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAACACTGAGAAAGGATCTAAAATGTCTACAGAATCAGCTTTGC  246

seq1  CCTCAGGCCAGCCCGTCCCAAGATTGA-CCAGCCTCTCTGCTATAGGACC  287
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCAGGCCAGCCCGTCCCAAGATTGACCCAGCCTCTCTGCTATAGGACC  296

seq1  TCAGGGTTCTTCAGAGAGCTGAAGATACACTTGAGGACTGTGGGTCTGAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTCTTCAGAGAGCTGAAGATACACTTGAGGACTGTGGGTCTGAT  346

seq1  CTTGTGGTTCTTTATAGCTTAAAGGAGTTGCCCAGTGAAGCTGGGAGAAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTTCTTTATAGCTTAAAGGAGTTGCCCAGTGAAGCTGGGAGAAG  396

seq1  CAGAAGACAAGGGAGAGAGTCAGCCAGATCCACTCCCAGATAAAAGGCTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAAGGGAGAGAGTCAGCCAGATCCACTCCCAGATAAAAGGCTA  446

seq1  CTATCAGTCTCAGACTTCTGCCAGCACACGGAGAACTGCTGGGAAAGGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTCTCAGACTTCTGCCAGCACACGGAGAACTGCTGGGAAAGGCA  496

seq1  GTTTGAGCCTCAGGCTTTCCTCCTATCCTGATCTCTGGCCACGACCCTGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGCCTCAGGCTTTCCTCCTATCCTGATCTCTGGCCACGACCCTGA  546

seq1  TTGGTCCCTCATGCCTATGCAAATGTCTAGCCCATCAGCCAGGGCCAACA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCTCATGCCTATGCAAATGTCTAGCCCATCAGCCAGGGCCAACA  596

seq1  ATCCCCAGCCTTACCAATAATCCCATAGCCTCAACTCCATTCTAGATGGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCCTTACCAATAATCCCATAGCCTCAACTCCATTCTAGATGGC  646

seq1  AAGAGAGGACCAGGAATTGTCCTCAGTATCTATTAATCATCTCATTTGGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGACCAGGAATTGTCCTCAGTATCTATTAATCATCTCATTTGGT  696

seq1  ATGCAGTCTGACTGACCAAATCTCTTACAAACCCCTCCTAACCATATTTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCTGACTGACCAAATCTCTTACAAACCCCTCCTAACCATATTTC  746

seq1  TATTGTCTTACCAAAGCTCCACTTCTGGTGGCAGACTTGGCCTCTGCGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTACCAAAGCTCCACTTCTGGTGGCAGACTTGGCCTCTGCGTT  796

seq1  GCTGCTCCCTGGAAATTCAGACTCACTCTTTCTGAATGTATGCTTTTAGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCCTGGAAATTCAGACTCACTCTTTCTGAATGTATGCTTTTAGT  846

seq1  AGTTTTATTATTTTAAGAAAATAAAATTAAAGTGTGCACTTTCAGTAAAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTATTTTAAGAAAATAAAATTAAAGTGTGCACTTTCAGTAAAT  896

seq1  TCCAGAAATGATTGTTATGCCTGCTAAGTTTGAGGCCGGGGCCCATATAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATGATTGTTATGCCTGCTAAGTTTGAGGCCGGGGCCCATATAA  946

seq1  GATCACTATCTCTGTTTTTCCAAGCAAGAGACATCACATTTGTGAATCTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTATCTCTGTTTTTCCAAGCAAGAGACATCACATTTGTGAATCTC  996

seq1  AGTCCTCTGGCCAGTTTCTGTGGATGTCAGTCATGATTCCGTCTTATTAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGGCCAGTTTCTGTGGATGTCAGTCATGATTCCGTCTTATTAA  1046

seq1  GTTAGTCTCTGAAGAGAAGGAAATCTTCTAGGACTGCTATAGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTCTGAAGAGAAGGAAATCTTCTAGGACTGCTATAGAATTC  1093

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information