BAC Information

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BAC

Clone NameB6Ng01-239B06
Chromosome18 (Build37)
Map Location 49,480,173 - 49,612,018
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B06.bB6Ng01-239B06.g
ACCGA049602GA049603
length1,0921,140
definitionB6Ng01-239B06.b B6Ng01-239B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,610,931 - 49,612,018)(49,480,173 - 49,481,317)
sequence
gaattctgatacttggtacacaaaggaactgattgtcttagtgttccagt
aaaacaggataatttgtcatctcgaaattgttcaggaaccaaccaaatgt
taacaatagatagtattttattacccccattggaagcatattgatctaaa
ttgttctggaatctttgaatcattagttagtattcaagggttgactctca
tgtaatgagatggcgtgtaacaaactcattagaacacaatccattgagaa
aaaaaaaacaaattgattgcagactatttgtaaggcaatctagggaaacc
aaaatgcataagacacagtctttgcccccaagaagtttccatatggtagt
aatttttatacttccacataatgaccctaaaaagctatcatctttttgca
gtgagattactactgtaaaccatttaggctcttcttcataagagttgcct
tcaaagagagtttaacatgtttacttctctgtgcacatatgcaacacagc
cactaccatagttactctttggtaccctaactactgaaagatggtttgta
aataaaatcctgactcagggctcttttgctgtaacactatagctaataat
aattaaaataaattaaatgcccaaaaggcataacaataatactccattac
acatgaaatgtatgtaaaatctaaataatcactcacaaataacatttatt
ctcatttgcaaagatcactcatgcctcatgcattgtctgtcactgctttc
atggcacacatgacttcagtagctcttccagagaccaggcacctgaaacc
ccatgtatttcctattttatttcataaataaatcatgccttggaactata
tattggttctcttttaagtattcttcagtttgatctactgtgttctacag
actttactttgaatgatttgcatttcctcctcaataataaaatatttttt
gcagatcaaggctgtattttattttcatggacatttcaagagatctgaat
caaggtttttgaaggtaggttccaagagttccaaatactataatggagag
aggcattattgagatagtttaggatgaagaaaatagttgaga

gaattcctaaaactgcactcaatcaagcattctatgcacattaaaacatc
caaaaataaaaataataaatatacttgccaatgatttttgcctgtatctg
tcactgttttcatgtcatgtcattttaatttctgttactaccataatcag
attatattttcctagtgttttatcatgatttccatgaatagattattaat
tatttctattgccttctaaaattcattgaatgtcaacactgtaatatcct
ctggtgccatgtaaaatatgaagctattaacaaacaaccaagtaagaaag
gaatttaaatgttcctttttgaagtagttctatttcagaacaatgctttt
ctgcattgttcagtagaacccagcttttgcccttatattacaaaactgaa
tacattacattgggtatttgattattagttgaccctaattttttaattta
aaaaaatagcttttcatttcattcatttaaaatacttacagaataaccat
tctgtggggaaaacaaatagaaaacacctccccaatatggtcagaagtgt
ttttaaatagattccagtcattctaagggaaagaaacatttttctctatt
tataactctgagctctttggaagcagggaacatgatgcagctgtacagct
ggtgcctagcagtatcttgtcccatggtaacaagctcatgattatgtagt
aaatgagtgaagccaaatgactgggtggacattaaagatgggagaaggag
caatgcaatcatgatagagtcaaatcagaaatgtttctgcttgcatgggg
agtgttctcttctagttgttctcagcctgtgagtatcagcccctctgggg
tcgaataccagataccctgcatatcagatatttacactacaatttctaac
agtagcaaaaatatagataagaagtagtaacaatataattttatgggtta
ggggtcacctcaacatgaggaactgtattaaggggttgcagcatgaggaa
ggttgcgaccactgtgatatagtcaatataacaatttcacaggctttata
cataattaatatgcatgcattcattatatagaccacaaatagtttctctg
atcctagctccttgtcatctggtgtattactacaacatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49610931_49612018
seq2: B6Ng01-239B06.b_45_1136 (reverse)

seq1  TCTC-ACTA-TTTCTTCCATCTTAACTATCTCAATAATGCCTCTCTCCAT  48
      |||| |||| |||||||   || |||||||||||||||||||||||||||
seq2  TCTCAACTATTTTCTTCATCCTAAACTATCTCAATAATGCCTCTCTCCAT  50

seq1  TATAGTATTTGGGAACTCTTTGGACCTACCTTC-AAAACCTTGATTCAGA  97
      |||||||||| ||||||||| | |||||||||| ||||||||||||||||
seq2  TATAGTATTT-GGAACTCTTGGAACCTACCTTCAAAAACCTTGATTCAGA  99

seq1  TCTCTTTGAATGTCCATG-AAATAAAATACAGCCTTGATCTGC-AAAAAT  145
      ||||||  |||||||||| |||||||||||||||||||||||| ||||||
seq2  TCTCTTGAAATGTCCATGAAAATAAAATACAGCCTTGATCTGCAAAAAAT  149

seq1  ATTTTATTATTGAGGAGGAAATGCAAATCAATTCAAAGT-AAGTCTGTAG  194
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ATTTTATTATTGAGGAGGAAATGCAAATC-ATTCAAAGTAAAGTCTGTAG  198

seq1  AACACAGTAGATCAAACTGAAGAATACTTAAAAGAGAACCAATATATAGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTAGATCAAACTGAAGAATACTTAAAAGAGAACCAATATATAGT  248

seq1  TCCAAGGCATGATTTATTTATGAAATAAAATAGGAAATACATGGGGTTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCATGATTTATTTATGAAATAAAATAGGAAATACATGGGGTTTC  298

seq1  AGGTGCCTGGTCTCTGGAAGAGCTACTGAAGTCATGTGTGCCATGAAAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTGGTCTCTGGAAGAGCTACTGAAGTCATGTGTGCCATGAAAGC  348

seq1  AGTGACAGACAATGCATGAGGCATGAGTGATCTTTGCAAATGAGAATAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACAATGCATGAGGCATGAGTGATCTTTGCAAATGAGAATAAA  398

seq1  TGTTATTTGTGAGTGATTATTTAGATTTTACATACATTTCATGTGTAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGTGAGTGATTATTTAGATTTTACATACATTTCATGTGTAATG  448

seq1  GAGTATTATTGTTATGCCTTTTGGGCATTTAATTTATTTTAATTATTATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTATTGTTATGCCTTTTGGGCATTTAATTTATTTTAATTATTATT  498

seq1  AGCTATAGTGTTACAGCAAAAGAGCCCTGAGTCAGGATTTTATTTACAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGTGTTACAGCAAAAGAGCCCTGAGTCAGGATTTTATTTACAAA  548

seq1  CCATCTTTCAGTAGTTAGGGTACCAAAGAGTAACTATGGTAGTGGCTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCAGTAGTTAGGGTACCAAAGAGTAACTATGGTAGTGGCTGTG  598

seq1  TTGCATATGTGCACAGAGAAGTAAACATGTTAAACTCTCTTTGAAGGCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGTGCACAGAGAAGTAAACATGTTAAACTCTCTTTGAAGGCAA  648

seq1  CTCTTATGAAGAAGAGCCTAAATGGTTTACAGTAGTAATCTCACTGCAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGAAGAAGAGCCTAAATGGTTTACAGTAGTAATCTCACTGCAAA  698

seq1  AAGATGATAGCTTTTTAGGGTCATTATGTGGAAGTATAAAAATTACTACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATAGCTTTTTAGGGTCATTATGTGGAAGTATAAAAATTACTACC  748

seq1  ATATGGAAACTTCTTGGGGGCAAAGACTGTGTCTTATGCATTTTGGTTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAACTTCTTGGGGGCAAAGACTGTGTCTTATGCATTTTGGTTTC  798

seq1  CCTAGATTGCCTTACAAATAGTCTGCAATCAATTTGTTTTTTTTTTCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTGCCTTACAAATAGTCTGCAATCAATTTGTTTTTTTTTTCTCA  848

seq1  ATGGATTGTGTTCTAATGAGTTTGTTACACGCCATCTCATTACATGAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGTGTTCTAATGAGTTTGTTACACGCCATCTCATTACATGAGAG  898

seq1  TCAACCCTTGAATACTAACTAATGATTCAAAGATTCCAGAACAATTTAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTTGAATACTAACTAATGATTCAAAGATTCCAGAACAATTTAGA  948

seq1  TCAATATGCTTCCAATGGGGGTAATAAAATACTATCTATTGTTAACATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGCTTCCAATGGGGGTAATAAAATACTATCTATTGTTAACATTT  998

seq1  GGTTGGTTCCTGAACAATTTCGAGATGACAAATTATCCTGTTTTACTGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTCCTGAACAATTTCGAGATGACAAATTATCCTGTTTTACTGGA  1048

seq1  ACACTAAGACAATCAGTTCCTTTGTGTACCAAGTATCAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGACAATCAGTTCCTTTGTGTACCAAGTATCAGAATTC  1092


seq1: chr18_49480173_49481317
seq2: B6Ng01-239B06.g_65_1204

seq1  GAATTCCTAAAACTGCACTCAATCAAGCATTCTATGCACATTAAAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAACTGCACTCAATCAAGCATTCTATGCACATTAAAACATC  50

seq1  CAAAAATAAAAATAATAAATATACTTGCCAATGATTTTTGCCTGTATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAAAATAATAAATATACTTGCCAATGATTTTTGCCTGTATCTG  100

seq1  TCACTGTTTTCATGTCATGTCATTTTAATTTCTGTTACTACCATAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTTTCATGTCATGTCATTTTAATTTCTGTTACTACCATAATCAG  150

seq1  ATTATATTTTCCTAGTGTTTTATCATGATTTCCATGAATAGATTATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTTCCTAGTGTTTTATCATGATTTCCATGAATAGATTATTAAT  200

seq1  TATTTCTATTGCCTTCTAAAATTCATTGAATGTCAACACTGTAATATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTGCCTTCTAAAATTCATTGAATGTCAACACTGTAATATCCT  250

seq1  CTGGTGCCATGTAAAATATGAAGCTATTAACAAACAACCAAGTAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCATGTAAAATATGAAGCTATTAACAAACAACCAAGTAAGAAAG  300

seq1  GAATTTAAATGTTCCTTTTTGAAGTAGTTCTATTTCAGAACAATGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAATGTTCCTTTTTGAAGTAGTTCTATTTCAGAACAATGCTTTT  350

seq1  CTGCATTGTTCAGTAGAACCCAGCTTTTGCCCTTATATTACAAAACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGTTCAGTAGAACCCAGCTTTTGCCCTTATATTACAAAACTGAA  400

seq1  TACATTACATTGGGTATTTGATTATTAGTTGACCCTAATTTTTTAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACATTGGGTATTTGATTATTAGTTGACCCTAATTTTTTAATTTA  450

seq1  AAAAAATAGCTTTTCATTTCATTCATTTAAAATACTTACAGAATAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGCTTTTCATTTCATTCATTTAAAATACTTACAGAATAACCAT  500

seq1  TCTGTGGGGAAAACAAATAGAAAACACCTCCCCAATATGGTCAGAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGGAAAACAAATAGAAAACACCTCCCCAATATGGTCAGAAGTGT  550

seq1  TTTTAAATAGATTCCAGTCATTCTAAGGGAAAGAAACATTTTTCTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAGATTCCAGTCATTCTAAGGGAAAGAAACATTTTTCTCTATT  600

seq1  TATAACTCTGAGCTCTTTGGAAGCAGGGAACATGATGCAGCTGTACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCTGAGCTCTTTGGAAGCAGGGAACATGATGCAGCTGTACAGCT  650

seq1  GGTGCCTAGCAGTATCTTGTCCCATGGTAACAAGCTCATGATTATGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTAGCAGTATCTTGTCCCATGGTAACAAGCTCATGATTATGTAGT  700

seq1  AAATGAGTGAAGCCAAATGACTGGGTGGACATTAAAGATGGGAGAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGAAGCCAAATGACTGGGTGGACATTAAAGATGGGAGAAGGAG  750

seq1  CAATGCAATCATGATAGAGTCAAATCAGAAATGTTTCTGCTTGCATGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAATCATGATAGAGTCAAATCAGAAATGTTTCTGCTTGCATGGGG  800

seq1  AGTGTTCTCTTCTAGTTGTTCTCAGCCTGTGAGTATCAGCCCCTCTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTCTTCTAGTTGTTCTCAGCCTGTGAGTATCAGCCCCTCTGGGG  850

seq1  TCGAATACCAGATACCCTGCATATCAGATATTTACACTACAATTTCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATACCAGATACCCTGCATATCAGATATTTACACTACAATTTCTAAC  900

seq1  AGTAGCAAAAATATAGATAAGAAGTAGTAACAATATAATTTTAT-GGTTA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTAGCAAAAATATAGATAAGAAGTAGTAACAATATAATTTTATGGGTTA  950

seq1  GGGGTCACCTCAACATGAGGAACTGTATTAAGGGGTTGCAGCATGAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCACCTCAACATGAGGAACTGTATTAAGGGGTTGCAGCATGAGGAA  1000

seq1  GGTTGCGAACCACTGTGATATAGTCAATATAAC-ATTTCACAGGCCTTTA  1048
      ||||||| ||||||||||||||||||||||||| |||||||||||  || 
seq2  GGTTGCG-ACCACTGTGATATAGTCAATATAACAATTTCACAGGC--TTT  1047

seq1  ATACATTAATTAATATGCATGCATTCATTATATAGACCACAAATAGTTTC  1098
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACA-TAATTAATATGCATGCATTCATTATATAGACCACAAATAGTTTC  1096

seq1  TCTGATCTTAGCTTTCTTTGTCATCTGTGTATTTTACTACAACATGC  1145
      ||||||| ||||  || |||||||||| || | ||||||||||||||
seq2  TCTGATCCTAGC--TCCTTGTCATCTG-GTGTATTACTACAACATGC  1140


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