BAC Information

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BAC

Clone NameB6Ng01-239D18
Chromosome18 (Build37)
Map Location 85,235,347 - 85,383,091
singlet/doubletdoublet
Overlap geneLOC100039765
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik
Downstream geneLOC665382, LOC545269, LOC545270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239D18.bB6Ng01-239D18.g
ACCGA049712GA049713
length1,1721,037
definitionB6Ng01-239D18.b B6Ng01-239D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,382,571 - 85,383,091)(85,235,347 - 85,236,381)
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
gacaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagctcttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatagtcatgttctacccacagtca
ggaagccaagagagatgaatgttcttgctcggcttgctgtctcctttatt
tccaacccaaaagcccagtctatgtagtgatggggccagttgggttggga
cttttcctctcagtgatccttcacacataaactcagcagtttgtatcgtc
agtgactctatatcctgtcaaattaacaacaaaaatgaactacgttagat
gttttctagtcaaaaagcactcttccatcttcacacctacatgtgtatac
ataaagctatttctgaataatcaactacaggtcttgggagctagagatac
agctcagcagttaaaagagccttctgcttttctagaagatcggggttcag
tttctagcactcacctaaggcagcccacaaactctagtaattccagatgg
agatgtgacactctctcctggactctatcagtactggcagacatatggca
tatactcacagacatataaataataaaacaattataataatctttaatat
ctccatcattatcatcatcatcattgccatgtctattatgcccctagcta
aatcatttcctttggtctctgctttgtttggggaacaaagactaatgtca
gctgttaaagggccagactttgagcatggcagatgaatagcaccatctag
caattctgaatttgaagactccgtgatttctaagtttctctagtgcataa
aatgaagcacctaaatgagcatgtacttgcaagatttgtttttgaaaact
ccaagttgagcctttaaacctatctgttagctgaagtatgagagagcaga
gcagcagccgctgcagctcctctgctccgcactatggaaaacttcagtac
atctttgctgacgttccatgtaaatcagagctcggggacattcagcctta
gacctggtgtttgaaaatttca

gaattcatctttctgcaggaaatagaataacactctcataattgccatca
ggtagagtaggttacatgagtcgggtgaatgactgaatttagttttagag
ggagacatgtgtcagatctcacagaactggaggagaaacataggcaagta
tgtgtcagaaccaaggacttcacgtgtgtatgagcagcatcatatagaaa
catgtcacacgtttaatgcatatgcacaacatagaccacgtgtagcattt
gaacattgtttcagtttatagtgttgaatttgcctcattcccttatcaaa
ctgaaacaaattttattccattaacatccatcaaggggcggtatttggca
tctttctagctggaaaatgatcgatgatattttctaattccatcaatttg
cctaagaatttcccttggtagtagagtgagacacaagaatgaacttctcc
agggaggacagagaaaacactcctaatacctgagcacagggccttgtcct
tttaggctgagcttcacaagcttgattgttcttcttgcataatctttatt
tatttatttatttatttatttatttatttatttatttattatttagatat
ttcctttatttacacttcaaatgttgtcccctttcctggtttcccctcca
aaaatcccctattcccttcccctcctcctgctcaacaacccacccattct
cacttcctggggcattcccctacattggggcatagagccttcacagaacc
aagggcctttccacccattgatgaccaacaaggccatcctctgctacata
ggcagctggagccatgagtcccttcatgtctactctttggttggtggttt
attccctgggagatcgggggttacttgttggttcatattgttgttcctca
tatgttccttcagctccttgggtcctttctctagctcctccattgtggac
cctttgcttagtccagtggtttggttgagagcatccacttctctgtattt
tatcagcactgatagaaccctttcaggagacagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85382571_85383091
seq2: B6Ng01-239D18.b_709_1214 (reverse)

seq1  TGAAATTTTC-AACACCAGGTCTTAAGCTGATGTTCCCCGAGCTTCTGGA  49
      |||||||||| |||||||||||| | |||||   ||||||||| ||| ||
seq2  TGAAATTTTCAAACACCAGGTCTAAGGCTGAATGTCCCCGAGC-TCT-GA  48

seq1  TATTACAT-GAAGGTCAGCCAAAGATTGTACTTGGAGTTTTCCATAGTGC  98
      | |||||| ||| ||||| |||||| ||||| || |||||||||||||||
seq2  T-TTACATGGAACGTCAG-CAAAGA-TGTAC-TGAAGTTTTCCATAGTGC  94

seq1  CGGGAGCAGAGGGGCTGCAGCGGCTTGCTTGCTCTGCCTCTTCTCATACT  148
        |||||||||| ||||||||||| ||| ||||||| ||| |||||||||
seq2  --GGAGCAGAGGAGCTGCAGCGGC-TGC-TGCTCTG-CTC-TCTCATACT  138

seq1  TCAGCTTAAACAGATAGGTTTAAAGGCTCAAACTTGGAGTTTTCAAAAAC  198
      ||||||  ||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGCT--AACAGATAGGTTTAAAGGCTC-AACTTGGAGTTTTCAAAAAC  185

seq1  AAATCTTTGCAAGTACATGCTCATTTAGGTGCTTCATTTTTATGCACTAG  248
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATC-TTGCAAGTACATGCTCATTTAGGTGCTTCA-TTTTATGCACTAG  233

seq1  AGAAACTTTAGAAATCACGGAGTCTTCAAATTCAGAATTGCTAGATGGTG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAC-TTAGAAATCACGGAGTCTTCAAATTCAGAATTGCTAGATGGTG  282

seq1  CTATTCATCTGCCATGCTCAAAGTCTGGCCC-TTAACAGCTGACATTAGT  347
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTATTCATCTGCCATGCTCAAAGTCTGGCCCTTTAACAGCTGACATTAGT  332

seq1  CTTTGTTCCCCAAACAAAGCAGAGACCAAAGGAAATGATTTAGCTAGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCCCCAAACAAAGCAGAGACCAAAGGAAATGATTTAGCTAGGGG  382

seq1  CATAATAGACATGGCAATGATGATGATGATAATGATGGAGATATTAAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGACATGGCAATGATGATGATGATAATGATGGAGATATTAAAGA  432

seq1  TTATTATAATTGTTTTATTATTTATATGTCTGTGAGTATATGCCATATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAATTGTTTTATTATTTATATGTCTGTGAGTATATGCCATATGT  482

seq1  CTGCCAGTACTGATAGAGTCCAGG  521
      ||||||||||||||||||||||||
seq2  CTGCCAGTACTGATAGAGTCCAGG  506


seq1: chr18_85235347_85236381
seq2: B6Ng01-239D18.g_66_1102

seq1  GAATTCATCTTTCTGCAGGAAATAGAATAACACTCTCATAATTGCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCTGCAGGAAATAGAATAACACTCTCATAATTGCCATCA  50

seq1  GGTAGAGTAGGTTACATGAGTCGGGTGAATGACTGAATTTAGTTTTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTAGGTTACATGAGTCGGGTGAATGACTGAATTTAGTTTTAGAG  100

seq1  GGAGACATGTGTCAGATCTCACAGAACTGGAGGAGAAACATAGGCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATGTGTCAGATCTCACAGAACTGGAGGAGAAACATAGGCAAGTA  150

seq1  TGTGTCAGAACCAAGGACTTCACGTGTGTATGAGCAGCATCATATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGAACCAAGGACTTCACGTGTGTATGAGCAGCATCATATAGAAA  200

seq1  CATGTCACACGTTTAATGCATATGCACAACATAGACCACGTGTAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACACGTTTAATGCATATGCACAACATAGACCACGTGTAGCATTT  250

seq1  GAACATTGTTTCAGTTTATAGTGTTGAATTTGCCTCATTCCCTTATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGTTTCAGTTTATAGTGTTGAATTTGCCTCATTCCCTTATCAAA  300

seq1  CTGAAACAAATTTTATTCCATTAACATCCATCAAGGGGCGGTATTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAAATTTTATTCCATTAACATCCATCAAGGGGCGGTATTTGGCA  350

seq1  TCTTTCTAGCTGGAAAATGATCGATGATATTTTCTAATTCCATCAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGCTGGAAAATGATCGATGATATTTTCTAATTCCATCAATTTG  400

seq1  CCTAAGAATTTCCCTTGGTAGTAGAGTGAGACACAAGAATGAACTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATTTCCCTTGGTAGTAGAGTGAGACACAAGAATGAACTTCTCC  450

seq1  AGGGAGGACAGAGAAAACACTCCTAATACCTGAGCACAGGGCCTTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGACAGAGAAAACACTCCTAATACCTGAGCACAGGGCCTTGTCCT  500

seq1  TTTAGGCTGAGCTTCACAAGCTTGATTGTTCTTCTTGCATAATCTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTGAGCTTCACAAGCTTGATTGTTCTTCTTGCATAATCTTTATT  550

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATTTAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATTTAGATAT  600

seq1  TTCCTTTATTTACACTTCAAATGTTGTCCCCTTTCCTGGTTTCCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATTTACACTTCAAATGTTGTCCCCTTTCCTGGTTTCCCCTCCA  650

seq1  AAAATCCCCTATTCCCTTCCCCTCCTCCTGCTCAACAACCCACCCATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCCTATTCCCTTCCCCTCCTCCTGCTCAACAACCCACCCATTCT  700

seq1  CACTTCCTGGGGCATTCCCCTACATTGGGGCATAGAGCCTTCACAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTGGGGCATTCCCCTACATTGGGGCATAGAGCCTTCACAGAACC  750

seq1  AAGGGCCTTTCCACCCATTGATGACCAACAAGGCCATCCTCTGCTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTTTCCACCCATTGATGACCAACAAGGCCATCCTCTGCTACATA  800

seq1  GGCAGCTGGAGCCATGAGTCCCTTCATGTCTACTCTTTGGTTGGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGGAGCCATGAGTCCCTTCATGTCTACTCTTTGGTTGGTGGTTT  850

seq1  ATTCCCTGGGAGATCGGGGGTTACTTGTTGGTTCATATTGTTGTTCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGGGAGATCGGGGGTTACTTGTTGGTTCATATTGTTGTTCCTCA  900

seq1  TATGTTCCTTCAGCTCCTTGGGTCCTTTCTCTAGCTCCTCCATTGTGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCTTCAGCTCCTTGGGTCCTTTCTCTAGCTCCTCCATTGTGGAC  950

seq1  CCTTTGCTTAGTCCAGTGG-TTGGTTGAGAGCATCCACTTCTCTGTA-TT  998
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CCTTTGCTTAGTCCAGTGGTTTGGTTGAGAGCATCCACTTCTCTGTATTT  1000

seq1  TATCAGGCACTGATAGAA-CCTTTCAGGAGACAGCTAT  1035
      ||||| |||||||||||| |||||||||||||||||||
seq2  TATCA-GCACTGATAGAACCCTTTCAGGAGACAGCTAT  1037


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