BAC Information

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BAC

Clone NameB6Ng01-239K10
Chromosome18 (Build37)10 (Build37)
Map Location 17,648,652 - 17,649,80478,583,234 - 78,583,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239K10.bB6Ng01-239K10.g
ACCGA050019GA050020
length1,147997
definitionB6Ng01-239K10.b B6Ng01-239K10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,648,652 - 17,649,804)(78,583,234 - 78,583,705)
sequence
gaattcttttattttattctattttgagtattagttcattttaatttgtt
gtgcattttgctgagaaaaatagattgtgggtgtttgccatttcattatc
acatttggttcctcttctatcattgttgtgaccttttgcattttgaaaaa
ttcatccaaacaatgttttcagcatgatagttatttttgtcatgagtatt
tgctttgttgctattcaaatgggatttagaaattttcttgtgccaacttc
tctttttcttggactttcctaatcgctttactgtcacatcaaagcatttt
aatcctcagctcacagaaaacacatgtcctgagatttccttctttcagtt
tcttgccgtatttatataagatgtctttaatctgttttcagttctttata
cttttaataatagtgtggaatagatttcatagttctcgatcacagttccc
ctcccctcatgagagaatagcacatggtctctcaatttgtatttttcttc
tccattatgtaaatgtgaaatttttatatatacgctctctatagttatcc
tatatatatgaagccttaggtaaactggaatataagggaaggtgtgaaat
tcaatatgttccagcatggaatctttctgtgtataatgtctcttttgtgc
tcattaaactttttgtaattccatccttgccgtaactatttctctctttc
ctagtcgtccttttatactcgtgactgtcttcttccccatttctgttgtc
aaggttacaggaggaggcattgctatgttcaagaagtattctaatgccca
tcaaatcagcaaaatgcccctgtgcaaagccatctcagtaagagcagctc
ttacaggttatctccccaatcctcctagatagagaattttgggtgatctt
gagtgtcagtatactctagaattcaacaatggtatctacatggctgatac
atgagaataaaagctgtacatttcatgtttacattattttgaaaatatgg
gtctttgaaaaattaaatacatgcccattaaagagcatacatagtttttt
catctatagtaaacttttccacaccctcattagtttttcttcctttttat
aatattaaaataaatctttaaccttattaaatacattagcctagata

gaattcttttgtgattgggttacctcactcaggatgatgccctccaggtc
catccatttgcctaggaatttcataaattctcggatatttttatgtttca
gaatttaattgtttgaatcttttaaaatatcattctcctcctgtataaat
ttgtaaaatttgtggaaaacagttaaattaatatgtgcagtacaatgttt
taatcaagtcaagtcttgatcaacttttattaattttcactcttggtttt
ccttactttttatgtatatccttgtgtggaaattatgttgttacataata
tttatatttttcttgtaaacattctgggtagttgtagcttggcttggtta
taattcatactcttctttcctggaagtgggttgctagataaggaatcagg
gacctcgggtctccctaagtgtgatgggacaagagcagaactcaatcttg
ggctagtaagtagtcacaactaagacaatacattacatgtctctactgaa
ttcactagtatcttaagcttctcccgattgtggaaacagtcactacttcc
agtcagtcctgtgcaagagttggccagagttgctgtcttagtcagggttt
ctattcctgcacaaaattatgaccaaaagcaagttggggaggacagggtt
tattcagcttacacttccatactgctcttcatcaccaaggaagtcagtac
tagaactcaagcaggtcaggaagcaggagctgatgcagaggccatggagg
gatgttccttactggcttgcttcccctgacttgctaagcctgctctctta
tagaacccaagactgccagcccagagatggcaccacccaccagaggcctt
tgcctctcaatcactaattgagaaaatgccccacagctggatctcatgga
ggcatttccccaactgaagatcctttttctgtgataaccccagcctatgt
caagttgacacataaaccagccagtacagtgctatttatcaaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17648652_17649804
seq2: B6Ng01-239K10.b_43_1189

seq1  GAATTCTTTTATTTTATTCTATTTTGAGTATTAGTTCATTTTAATTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTTTATTCTATTTTGAGTATTAGTTCATTTTAATTTGTT  50

seq1  GTGCATTTTGCTGAGAAAAATAGATTGTGGGTGTTTGCCATTTCATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTTGCTGAGAAAAATAGATTGTGGGTGTTTGCCATTTCATTATC  100

seq1  ACATTTGGTTCCTCTTCTATCATTGTTGTGACCTTTTGCATTTTGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTTCCTCTTCTATCATTGTTGTGACCTTTTGCATTTTGAAAAA  150

seq1  TTCATCCAAACAATGTTTTCAGCATGATAGTTATTTTTGTCATGAGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAAACAATGTTTTCAGCATGATAGTTATTTTTGTCATGAGTATT  200

seq1  TGCTTTGTTGCTATTCAAATGGGATTTAGAAATTTTCTTGTGCCAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTGCTATTCAAATGGGATTTAGAAATTTTCTTGTGCCAACTTC  250

seq1  TCTTTTTCTTGGACTTTCCTAATCGCTTTACTGTCACATCAAAGCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTGGACTTTCCTAATCGCTTTACTGTCACATCAAAGCATTTT  300

seq1  AATCCTCAGCTCACAGAAAACACATGTCCTGAGATTTCCTTCTTTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAGCTCACAGAAAACACATGTCCTGAGATTTCCTTCTTTCAGTT  350

seq1  TCTTGCCGTATTTATATAAGATGTCTTTAATCTGTTTTCAGTTCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCGTATTTATATAAGATGTCTTTAATCTGTTTTCAGTTCTTTATA  400

seq1  CTTTTAATAATAGTGTGGAATAGATTTCATAGTTCTCGATCACAGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAATAGTGTGGAATAGATTTCATAGTTCTCGATCACAGTTCCC  450

seq1  CTCCCCTCATGAGAGAATAGCACATGGTCTCTCAATTTGTATTTTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCATGAGAGAATAGCACATGGTCTCTCAATTTGTATTTTTCTTC  500

seq1  TCCATTATGTAAATGTGAAATTTTTATATATACGCTCTCTATAGTTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATGTAAATGTGAAATTTTTATATATACGCTCTCTATAGTTATCC  550

seq1  TATATATATGAAGCCTTAGGTAAACTGGAATATAAGGGAAGGTGTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGAAGCCTTAGGTAAACTGGAATATAAGGGAAGGTGTGAAAT  600

seq1  TCAATATGTTCCAGCATGGAATCTTTCTGTGTATAATGTCTCTTTTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTTCCAGCATGGAATCTTTCTGTGTATAATGTCTCTTTTGTGC  650

seq1  TCATTAAACTTTTTGTAATTCCATCCTTGCCGTAACTATTTCTCTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAACTTTTTGTAATTCCATCCTTGCCGTAACTATTTCTCTCTTTC  700

seq1  CTAGTCGTCCTTTTATACTCGTGACTGTCTTCTTCCCCATTTCTGTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCGTCCTTTTATACTCGTGACTGTCTTCTTCCCCATTTCTGTTGTC  750

seq1  AAGGTTACAGGAGGAGGCATTGCTATGTTCAAGAAGTATTCTAATGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTACAGGAGGAGGCATTGCTATGTTCAAGAAGTATTCTAATGCCCA  800

seq1  TCAAATCAGCAAAATGCCCCTGTGCAAAGCCATCTCAGTAAGAGCAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGCAAAATGCCCCTGTGCAAAGCCATCTCAGTAAGAGCAGCTC  850

seq1  TTACAGGTTATCTCCCCAATCCTCCTAGATAGAGAATTTTGGGTGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTTATCTCCCCAATCCTCCTAGATAGAGAATTTTGGGTGATCTT  900

seq1  GAGTGTCAGGTATACTCTAGAATTCAACAAATGGTATCTACATGGCTGAA  950
      |||||||| ||||||||||||||||||| ||||||||||||||||||| |
seq2  GAGTGTCA-GTATACTCTAGAATTCAAC-AATGGTATCTACATGGCTG-A  947

seq1  TACATGAGAAATAAAAGCTGTACATTTCATGTTTACATTATTTTGAAAAT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAG-AATAAAAGCTGTACATTTCATGTTTACATTATTTTGAAAAT  996

seq1  AT-GGTCTTTGAAAAAATAAATACATGCCCAATTAAAGAGCATACAATAG  1049
      || ||||||||||||| ||||||||||||| |||||||||||||| ||| 
seq2  ATGGGTCTTTGAAAAATTAAATACATGCCC-ATTAAAGAGCATAC-ATA-  1043

seq1  GTTTTTTCATTCTATAGTAAAACTATTCCACA--CTCATTAG-TTTTCTT  1096
      ||||||||| |||||||| ||||| |||||||  |||||||| |||||||
seq2  GTTTTTTCA-TCTATAGT-AAACTTTTCCACACCCTCATTAGTTTTTCTT  1091

seq1  TCTTTTTATAAATATTAAAATAAATCTTTACACTAATAAAATACATTAGC  1146
       |||||||| ||||||||||||||||||||  || || ||||||||||||
seq2  CCTTTTTAT-AATATTAAAATAAATCTTTAACCTTATTAAATACATTAGC  1140

seq1  ATAGATA  1153
       ||||||
seq2  CTAGATA  1147


seq1: chr10_78583234_78583705
seq2: B6Ng01-239K10.g_364_881

seq1  TTATATTTTTCTTGTAAA-AT-----GTAGTAATGTTCCATG---TGTGT  41
      |||||||||||||||||| ||     |||||  |||  | ||   ||  |
seq2  TTATATTTTTCTTGTAAACATTCTGGGTAGT--TGTAGCTTGGCTTGGTT  48

seq1  A----TCATTTTGGTCCTTCCAGGGCATAAATTCATTTCCTCAGTGTAAG  87
      |    ||||  |  || |||| ||     || |   || || ||  ||||
seq2  ATAATTCATACTCTTCTTTCCTGG-----AAGTGGGTTGCT-AG-ATAAG  91

seq1  --ACCTGGCTCAGAGGGTAAAATGCTTAACTGTGAT--GAAAGGATGTGA  133
        | | ||  |   ||||    | | ||| ||||||  || | ||   ||
seq2  GAATCAGGGACCTCGGGT---CTCCCTAAGTGTGATGGGACAAGAGCAGA  138

seq1  -------GTTTAGATAGTCTGTA--TAAAAATAAG----TAC--CACAGC  168
              ||  | ||||  |||   | || ||||    |||   |||  
seq2  ACTCAATCTTGGGCTAGTAAGTAGTCACAACTAAGACAATACATTACATG  188

seq1  TCTCTAC----TACAAATGTGTCTGGGGCCTCAGACCAGCGTGTGTA---  211
      |||||||    | ||   || |||   || ||   || |  |||| |   
seq2  TCTCTACTGAATTCACTAGTATCTTAAGCTTC--TCCCGATTGTGGAAAC  236

seq1  ------TGCTT-----------TTTGGTAG-GTGGCTCAG------TGTC  237
            | |||           | ||  || || |  |||      ||||
seq2  AGTCACTACTTCCAGTCAGTCCTGTGCAAGAGTTGGCCAGAGTTGCTGTC  286

seq1  TTAGACAGGGTTTCTATTCCTGGACAAACATCATGACCAAGAAGCAAGTT  287
      |||| ||||||||||||||||| ||||| || |||||||| |||||||||
seq2  TTAGTCAGGGTTTCTATTCCTGCACAAA-ATTATGACCAA-AAGCAAGTT  334

seq1  GGGGAGGAAAGGGTTTATTCAGCTTACATTTCCACATTGCTGTTCATCAC  337
      |||||||| ||||||||||||||||||| ||||| | |||| ||||||||
seq2  GGGGAGGACAGGGTTTATTCAGCTTACACTTCCATACTGCTCTTCATCAC  384

seq1  TGAAGGAAGTCAGGACTGGAACTCAAGCAAGTCAGGAAGCAGGAGCTGAT  387
        ||||||||||| ||| ||||||||||| ||||||||||||||||||||
seq2  -CAAGGAAGTCAGTACTAGAACTCAAGCAGGTCAGGAAGCAGGAGCTGAT  433

seq1  ACAGAGGCCATGGAAGGATGTTCTTTATTGGCTTGCCTTCCCTGGCTTGC  437
       ||||||||||||| |||||||| ||| |||||||| | ||||| |||||
seq2  GCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTTCCCCTGACTTGC  483

seq1  TCAGCCTGCTCTCTTATAGAATCCAAGACTACCAG  472
      | ||||||||||||||||||| |||||||| ||||
seq2  TAAGCCTGCTCTCTTATAGAACCCAAGACTGCCAG  518


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