BAC Information

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BAC

Clone NameB6Ng01-240B18
Chromosome18 (Build37)
Map Location 51,897,802 - 51,956,468
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B18.bB6Ng01-240B18.g
ACCGA050362GA050363
length1,1711,118
definitionB6Ng01-240B18.b B6Ng01-240B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,897,802 - 51,898,977)(51,955,342 - 51,956,468)
sequence
gaattctttctcttcctaggtatttcttaaagtaacttagggttttaagt
tgactgcaaatgattatatcaaaagcattagctgtttaatgcagtgattc
tgtgggtgcaaacttctaaatgcataaaaatctatggccttgaaatacag
ggtattcacataagatatctactttgtatggaaatgaatgcacttcaaag
ctaaacaaacataactaatttctcccctcccagacatgaaagaatgaaaa
tgcttgcccatgctctcagcacagtcagcctgccactgagtttactattt
taagtgtatttcctaacacacatcaaataacaaataatttggaacacttt
tttttttagatactgtcaaacatttttttctcattagtaaaactgagaag
tcatcagtagctaatgtgcaaggtaaactgaattggcagagcaattttgt
tcgtgatttaattttctcgaagcttctctctaccttacagcctttggtgt
tttcccctctgtattttcaagccacagctcactcctttcggttatcacaa
cattaaagtctgttgaaataaactagattatttgttttctagtagcacag
aacaatgccaatccagctaggaaaataaatgtattaaacagataaaaaga
accttattcatggttgtcagagtttgatagtgaaggctgcagaccttgaa
aacacacaggtctttagagaagttctttaaattggaatcatgataataca
accgtcttgcagaatcattgatatgcagagtgccttatattatattcatt
aatacattgggagattaaagaatataaagcaaacattctttttttacaac
aatacttattttttcttaagttaaatagataagaaatgaacatgtatata
gtggaaaacatcataatatatttagtgaaataattatttaatgctatgta
gtaccatgtgataaaaatagtgttttggttttgttttcttgcctcacact
agaccaaggtactgacaatggagatatgagatatggaataatctcatgaa
ggcccatttgccaacaatcatctggcaccagaaggcttgtgataaagatg
gccaggtggggtcctgtctctgcaatattgggcagttctactagaaatca
tatataatgtataggtgtgtg

gaattccacactcctaagccacttaccccataaaaacccctagctttcga
gcctcgtggccgacattatctcatgtgtgggatgcatgtcggtccaagct
ccgtcattaaacgacctcatgtaatcacatcaaggcgttctgttctgttc
gtgattcttaggtacacgccggatccggatcaggaattgagtgggggttt
ccccactaggttctatcaatactttaggctgcaactccagagagagaagg
agggtgaggctgatgaagagaggaatcagcatccagctcatgtctctttt
ccccaagatttgaatattgccattaattattaaattaattggccatccta
tttcagaaaatccaaacaaaatattttgtaaaacttccatcgtatgaatg
tccttcagggcacaaatttcttaatattaagccaggtatggtaatataca
attgtaatcaaaccacttggggaatgtgtgcaggaggatcagaaactcaa
gatgaccacccagcaaatctgataccaagaagcaacatgagacccctttc
tcattgaattcttcttccttccttcttcctctttctactttgaaatacgt
ttttctccatttttttctgtctaatcaataaacttttacattaaataaga
caatatgaattaaagcttatcgggaaagacttcactttgtagagttattt
tattgcatcctcagttttattctgttattgttcctgagtaaatgtggtaa
gaaactacttgaatctaaaatagtcattgaaatcaaaattaaccttgaat
gccagtgttgaactctcacaatatttcatgtgttgcttatccctattaat
attgcaaatttacaacaggaaaattttgttttctgctagaggcttacaat
gtgtcatatgatacatttgaagaacagcagactctttacaaggcaaacat
gtaagtgaacctacatttccagatattcttatggagaaccaggtcgagta
ttgctttattttctaatagatgaagttgctttgctacaatgactttttaa
tagcacaaaccatgatagagtgaaatttattatgtctaatactttgacag
gtattctccaaactacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51897802_51898977
seq2: B6Ng01-240B18.b_44_1214

seq1  GAATTCTTTCTCTTCCTAGGTATTTCTTAAAGTAACTTAGGGTTTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTTCCTAGGTATTTCTTAAAGTAACTTAGGGTTTTAAGT  50

seq1  TGACTGCAAATGATTATATCAAAAGCATTAGCTGTTTAATGCAGTGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCAAATGATTATATCAAAAGCATTAGCTGTTTAATGCAGTGATTC  100

seq1  TGTGGGTGCAAACTTCTAAATGCATAAAAATCTATGGCCTTGAAATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCAAACTTCTAAATGCATAAAAATCTATGGCCTTGAAATACAG  150

seq1  GGTATTCACATAAGATATCTACTTTGTATGGAAATGAATGCACTTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCACATAAGATATCTACTTTGTATGGAAATGAATGCACTTCAAAG  200

seq1  CTAAACAAACATAACTAATTTCTCCCCTCCCAGACATGAAAGAATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAACATAACTAATTTCTCCCCTCCCAGACATGAAAGAATGAAAA  250

seq1  TGCTTGCCCATGCTCTCAGCACAGTCAGCCTGCCACTGAGTTTACTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCCATGCTCTCAGCACAGTCAGCCTGCCACTGAGTTTACTATTT  300

seq1  TAAGTGTATTTCCTAACACACATCAAATAACAAATAATTTGGAACACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATTTCCTAACACACATCAAATAACAAATAATTTGGAACACTTT  350

seq1  TTTTTTTAGATACTGTCAAACATTTTTTTCTCATTAGTAAAACTGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGATACTGTCAAACATTTTTTTCTCATTAGTAAAACTGAGAAG  400

seq1  TCATCAGTAGCTAATGTGCAAGGTAAACTGAATTGGCAGAGCAATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTAGCTAATGTGCAAGGTAAACTGAATTGGCAGAGCAATTTTGT  450

seq1  TCGTGATTTAATTTTCTCGAAGCTTCTCTCTACCTTACAGCCTTTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTTAATTTTCTCGAAGCTTCTCTCTACCTTACAGCCTTTGGTGT  500

seq1  TTTCCCCTCTGTATTTTCAAGCCACAGCTCACTCCTTTCGGTTATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCTGTATTTTCAAGCCACAGCTCACTCCTTTCGGTTATCACAA  550

seq1  CATTAAAGTCTGTTGAAATAAACTAGATTATTTGTTTTCTAGTAGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGTCTGTTGAAATAAACTAGATTATTTGTTTTCTAGTAGCACAG  600

seq1  AACAATGCCAATCCAGCTAGGAAAATAAATGTATTAAACAGATAAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCCAATCCAGCTAGGAAAATAAATGTATTAAACAGATAAAAAGA  650

seq1  ACCTTATTCATGGTTGTCAGAGTTTGATAGTGAAGGCTGCAGACCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTCATGGTTGTCAGAGTTTGATAGTGAAGGCTGCAGACCTTGAA  700

seq1  AACACACAGGTCTTTAGAGAAGTTCTTTAAATTGGAATCATGATAATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGGTCTTTAGAGAAGTTCTTTAAATTGGAATCATGATAATACA  750

seq1  ACCGTCTTGCAGAATCATTGATATGCAGAGTGCCTTATATTATATTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTTGCAGAATCATTGATATGCAGAGTGCCTTATATTATATTCATT  800

seq1  AATACATTGGGAGATTAAAGAATATAAAGCAAACATTCTTTTTTTACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTGGGAGATTAAAGAATATAAAGCAAACATTCTTTTTTTACAAC  850

seq1  AATACTTATTTTTTCTTAAGTTAAATAGATAAGAAATGAACATGTATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTATTTTTTCTTAAGTTAAATAGATAAGAAATGAACATGTATATA  900

seq1  GTGGAAAACATCATAATATATTTAGTGAAATAATTATTTAATGCTATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAACATCATAATATATTTAGTGAAATAATTATTTAATGCTATGTA  950

seq1  GTACCATGTGAT-AAAATAGTGTTTT-GTTTTGTTTTCTTGCCTCACAAC  998
      |||||||||||| ||||||||||||| |||||||||||||||||||| ||
seq2  GTACCATGTGATAAAAATAGTGTTTTGGTTTTGTTTTCTTGCCTCAC-AC  999

seq1  TAGACCAAGGTACTGACAAT-GAGATATGAAGAATATTGAATAATCTCAT  1047
      |||||||||||||||||||| |||||||||   |||| ||||||||||||
seq2  TAGACCAAGGTACTGACAATGGAGATATGA--GATATGGAATAATCTCAT  1047

seq1  GAAGCCCATTTTGCCAACAAATCAATTCTGGCACCAGAAGCTTTGTTGAT  1097
      |||| ||  ||||||||| |||||  ||||||||||||||  ||| ||| 
seq2  GAAGGCCCATTTGCCAAC-AATCA--TCTGGCACCAGAAGGCTTG-TGA-  1092

seq1  TAAAGATGGCCAGTTGGGTCCCTGTCTCTGCCAATATTTGGCAATTCTAC  1147
      ||||||||||||| ||||  |||||||||| ||||||| |||| ||||||
seq2  TAAAGATGGCCAGGTGGGGTCCTGTCTCTG-CAATATTGGGCAGTTCTAC  1141

seq1  T-TAGATCATATAT-ATGTATAGTGTGTGTG  1176
      |  | ||||||||| |||||||| |||||||
seq2  TAGAAATCATATATAATGTATAG-GTGTGTG  1171


seq1: chr18_51955342_51956468
seq2: B6Ng01-240B18.g_61_1178 (reverse)

seq1  ATGTAGTTTTTGAGAATAACTGTCAAGGTATATAAGACATAATAAAATTT  50
      |||||| ||| ||||||| ||||||| |  ||| ||||||||| ||||||
seq2  ATGTAG-TTTGGAGAATACCTGTCAAAG--TATTAGACATAAT-AAATTT  46

seq1  CACTCTATCATTGGTTTGTGCTATTAAAAAGTCAATTTGGTAGCAAAAGC  100
      |||||||||| |||||||||||||||||||||||   | ||||| |||||
seq2  CACTCTATCA-TGGTTTGTGCTATTAAAAAGTCA---TTGTAGC-AAAGC  91

seq1  AACTTCATCTA-TAGAAAATTAAAGCAATTACTCGACCTGGTTCTCCATA  149
      ||||||||||| ||||||| |||||||| |||||||||||||||||||||
seq2  AACTTCATCTATTAGAAAA-TAAAGCAA-TACTCGACCTGGTTCTCCATA  139

seq1  AG-ATATCTGGAAATGTAGGTTCACTTACATGTTTGCCTTTGTAAAGAGT  198
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAATATCTGGAAATGTAGGTTCACTTACATGTTTGCC-TTGTAAAGAGT  188

seq1  CTGCTGTTCTTC-AATGTATCATATGACACATTGTAAGCCTCTAGCAGAA  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTCTTCAAATGTATCATATGACACATTGTAAGCCTCTAGCAGAA  238

seq1  AACAAAATTTTCCTGTTGTAAATTTGCAATATTAATAGGGATAAGCAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTTTCCTGTTGTAAATTTGCAATATTAATAGGGATAAGCAACA  288

seq1  CATGAAATATTGTGAGAGTTCAACACTGGCATTCAAGGTTAATTTTGATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATATTGTGAGAGTTCAACACTGGCATTCAAGGTTAATTTTGATT  338

seq1  TCAATGACTATTTTAGATTCAAGTAGTTTCTTACCACATTTACTCAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACTATTTTAGATTCAAGTAGTTTCTTACCACATTTACTCAGGAA  388

seq1  CAATAACAGAATAAAACTGAGGATGCAATAAAATAACTCTACAAAGTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAGAATAAAACTGAGGATGCAATAAAATAACTCTACAAAGTGAA  438

seq1  GTCTTTCCCGATAAGCTTTAATTCATATTGTCTTATTTAATGTAAAAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCCGATAAGCTTTAATTCATATTGTCTTATTTAATGTAAAAGTT  488

seq1  TATTGATTAGACAGAAAAAAATGGAGAAAAACGTATTTCAAAGTAGAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAGACAGAAAAAAATGGAGAAAAACGTATTTCAAAGTAGAAAG  538

seq1  AGGAAGAAGGAAGGAAGAAGAATTCAATGAGAAAGGGGTCTCATGTTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGGAAGGAAGAAGAATTCAATGAGAAAGGGGTCTCATGTTGCT  588

seq1  TCTTGGTATCAGATTTGCTGGGTGGTCATCTTGAGTTTCTGATCCTCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTATCAGATTTGCTGGGTGGTCATCTTGAGTTTCTGATCCTCCTG  638

seq1  CACACATTCCCCAAGTGGTTTGATTACAATTGTATATTACCATACCTGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCCCCAAGTGGTTTGATTACAATTGTATATTACCATACCTGGC  688

seq1  TTAATATTAAGAAATTTGTGCCCTGAAGGACATTCATACGATGGAAGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAGAAATTTGTGCCCTGAAGGACATTCATACGATGGAAGTTT  738

seq1  TACAAAATATTTTGTTTGGATTTTCTGAAATAGGATGGCCAATTAATTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATTTTGTTTGGATTTTCTGAAATAGGATGGCCAATTAATTTA  788

seq1  ATAATTAATGGCAATATTCAAATCTTGGGGAAAAGAGACATGAGCTGGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATGGCAATATTCAAATCTTGGGGAAAAGAGACATGAGCTGGAT  838

seq1  GCTGATTCCTCTCTTCATCAGCCTCACCCTCCTTCTCTCTCTGGAGTTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTCCTCTCTTCATCAGCCTCACCCTCCTTCTCTCTCTGGAGTTGC  888

seq1  AGCCTAAAGTATTGATAGAACCTAGTGGGGAAACCCCCACTCAATTCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGTATTGATAGAACCTAGTGGGGAAACCCCCACTCAATTCCTG  938

seq1  ATCCGGATCCGGCGTGTACCTAAGAATCACGAACAGAACAGAACGCCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGATCCGGCGTGTACCTAAGAATCACGAACAGAACAGAACGCCTTG  988

seq1  ATGTGATTACATGAGGTCGTTTAATGACGGAGCTTGGACCGACATGCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTACATGAGGTCGTTTAATGACGGAGCTTGGACCGACATGCATC  1038

seq1  CCACACATGAGATAATGTCGGCCACGAGGCTCGAAAGCTAGGGGTTTTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGAGATAATGTCGGCCACGAGGCTCGAAAGCTAGGGGTTTTTA  1088

seq1  TGGGGTAAGTGGCTTAGGAGTGTGGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  TGGGGTAAGTGGCTTAGGAGTGTGGAATTC  1118


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