BAC Information

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BAC

Clone NameB6Ng01-240C06
Chromosome18 (Build37)
Map Location 26,296,755 - 26,398,901
singlet/doubletdoublet
Overlap genenone
Upstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240C06.bB6Ng01-240C06.g
ACCGA050386GA050387
length560790
definitionB6Ng01-240C06.b B6Ng01-240C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,296,755 - 26,297,318)(26,398,445 - 26,398,901)
sequence
accaaacttgatgtgtttcacagaaagaaatgtttctggtcctgagaata
ctggaaaatacacaaatgaagtttaatccacataagagcatatataccat
gttttatatatgtgtgatatgagtttcttattctaaccaatctgaaatct
ggcttaagaattgaacaaaaatgaatacttttatatacataaattgttgg
caaaagtctcgacaagaaagagtgtgttatgtattaagtaacaaaatttc
atttaactatgaaacaagcacatacatgggaaatatattgccaaaatact
ccatacctattacataaaagtaacttatatagagaaagagtggacaaaga
agagaaacactgcaacatcaggtgccaaggtgaattgatatccattggag
gcctccccttctctgaggacaaagggaggaggcatataaggaggggagaa
gagagagtggaattggaaggagggaggagaagctcgcatcgggattttaa
gtaaataaataaactaattttaaaaagagatacttaactcatttttaggg
tggctaatgt

gaattctttcttggaaagtgacccaagacccggttgagcacatgaaaacc
actagtatagacttacactcactcactcgatagcaaagccaaacagatta
aacattaggctacttacagggggcaaattttcaaaatttcactgcaaagt
tttactgcttatacatgaatatttgattatgtggcatcaacagtttcagg
taaaagattttgggtctatttcacactgcagaaatgttagcatcttccaa
gttgtgaaagtaagtgccccagctttgtgtaaaatgtgcattcagtttca
gaatctctactcatgtgcacctacacaaaaacacatacatacacacacca
tataaatgtttgtgtgtgtatatatatatatatatatatatatatatata
tatatatatatacatatatatacacatacatacacatagtgtgtgtgtgt
gtgtgtgtgtatgtgcgggtgtggagtttgtgagtgtgtgtgtgtgtgtg
tgcgcgcgcgcgcgcgcgcgcacacacacacacacagagacacatacata
cacagagagagagagacatacacacacatatgcgagagagagagagtcac
acacacacacacacacatatacatatacacatacatgcgcgcgcgtgagc
gcaatttctctccctgtgagccagtttatttagtgtgtgagtgtgtgtgt
gtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtctttgctctcacac
actcacagacacacacacatataagacacacatacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26296755_26297318
seq2: B6Ng01-240C06.b_48_613

seq1  GAATTCACCAAACTTGATGTGTTTCACAGAAAGAAATGTTTCTGGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAACTTGATGTGTTTCACAGAAAGAAATGTTTCTGGTCCTG  50

seq1  AGAATACTGGAAAATACACAAATGAAGTTTAATCCACATAAGAGCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTGGAAAATACACAAATGAAGTTTAATCCACATAAGAGCATATA  100

seq1  TACCATGTTTTATATATGTGTGATATGAGTTTCTTATTCTAACCAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTTTATATATGTGTGATATGAGTTTCTTATTCTAACCAATCTG  150

seq1  AAATCTGGCTTAAGAATTGAACAAAAATGAATACTTTTATATACATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGCTTAAGAATTGAACAAAAATGAATACTTTTATATACATAAAT  200

seq1  TGTTGGCAAAAGTCTCGACAAGAAAGAGTGTGTTATGTATTAAGTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCAAAAGTCTCGACAAGAAAGAGTGTGTTATGTATTAAGTAACAA  250

seq1  AATTTCATTTAACTATGAAACAAGCACATACATGGGAAATATATTGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTAACTATGAAACAAGCACATACATGGGAAATATATTGCCAA  300

seq1  AATACTCCATACCTATTACATAAAAGTAACTTATATAGAGAAAGAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCATACCTATTACATAAAAGTAACTTATATAGAGAAAGAGTGGA  350

seq1  CAAAGAAGAGAAACACTGCAACATCAGGTGCCAAGGTGAATTGATATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAGAAACACTGCAACATCAGGTGCCAAGGTGAATTGATATCCA  400

seq1  TTGGAGGCCTCCCCTTCTCTGAGGACAAAGGGAGGAGGCATATAAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCTCCCCTTCTCTGAGGACAAAGGGAGGAGGCATATAAGGAGG  450

seq1  GGAGAAGAGAGAGTGGAATTGGAAGGAGGGAGGAGAAGCTCGGATCGGGA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGAAGAGAGAGTGGAATTGGAAGGAGGGAGGAGAAGCTCGCATCGGGA  500

seq1  TTTAAAGTAAATAAGCAAACTAATTTTAAAAAGAGATACTAAACTCATTT  550
      ||| ||||||||||  |||||||||||||||||||||||| |||||||||
seq2  TTTTAAGTAAATAAATAAACTAATTTTAAAAAGAGATACTTAACTCATTT  550

seq1  T--AGGTGGCTAATGT  564
      |   ||||||||||||
seq2  TTAGGGTGGCTAATGT  566


seq1: chr18_26398445_26398901
seq2: B6Ng01-240C06.g_65_854 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGTATGTATGTGTGTCTTATATGTGTGTGTGTCTGTGAGTGTGTGAGAGC  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAAGACACACACACACACACACACACACACTCACACACACACACACACAC  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCACACACTAAATAAACTGGCTCACAGGGAGAGAAATTGCGCTCACGCGC  150

seq1  --------------------------------------------------  0
                                                        
seq2  GCGCATGTATGTGTATATGTATATGTGTGTGTGTGTGTGTGTGACTCTCT  200

seq1  --------------------------------------------------  0
                                                        
seq2  CTCTCTCGCATATGTGTGTGTATGTCTCTCTCTCTCTGTGTATGTATGTG  250

seq1  --------------------------------------------------  0
                                                        
seq2  TCTCTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGCACACACACACA  300

seq1  -----------------------TGTATGGTATGTGTGCA----------  17
                              | |   ||      ||          
seq2  CACACACTCACAAACTCCACACCCGCA-CATACACACACACACACACACA  349

seq1  ---TATGTGTACGTTTGTGCATATATATGTATATATATATATATATATAT  64
         |||||||| || |||| |||||||||  |||||||||||||||||||
seq2  CACTATGTGTATGTATGTGTATATATATG--TATATATATATATATATAT  397

seq1  ATATATATATATATATATATATATACACACACAAACATTTATATGGTGTG  114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATACACACACAAACATTTATATGGTGTG  447

seq1  TGTATGTATGTGTTTTTGTGTAGGTGCACATGAGTAGAGATTCTGAAACT  164
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTGTTTTTGTGTAGGTGCACATGAGTAGAGATTCTGAAACT  497

seq1  GAATGCACATTTTACACAAAGCTGGGGCACTTACTTTCACAACTTGGAAG  214
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACATTTTACACAAAGCTGGGGCACTTACTTTCACAACTTGGAAG  547

seq1  ATGCTAACATTTCTGCAGTGTGAAATAGACCCAAAATCTTTTACCTGAAA  264
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACATTTCTGCAGTGTGAAATAGACCCAAAATCTTTTACCTGAAA  597

seq1  CTGTTGATGCCACATAATCAAATATTCATGTATAAGCAGTAAAACTTTGC  314
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATGCCACATAATCAAATATTCATGTATAAGCAGTAAAACTTTGC  647

seq1  AGTGAAATTTTGAAAATTTGCCCCCTGTAAGTAGCCTAATGTTTAATCTG  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTTTGAAAATTTGCCCCCTGTAAGTAGCCTAATGTTTAATCTG  697

seq1  TTTGGCTTTGCTATCGAGTGAGTGAGTGTAAGTCTATACTAGTGGTTTTC  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTGCTATCGAGTGAGTGAGTGTAAGTCTATACTAGTGGTTTTC  747

seq1  ATGTGCTCAACCGGGTCTTGGGTCACTTTCCAAGAAAGAATTC  457
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCAACCGGGTCTTGGGTCACTTTCCAAGAAAGAATTC  790


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