BAC Information

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BAC

Clone NameB6Ng01-240D21
Chromosome18 (Build37)
Map Location 71,613,216 - 71,746,770
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D21.bB6Ng01-240D21.g
ACCGA050462GA050463
length930968
definitionB6Ng01-240D21.b B6Ng01-240D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,745,856 - 71,746,770)(71,613,216 - 71,614,194)
sequence
gaattctattcacactgcttcacaaatgggtttactaacagtaattaaac
tatatcctttacagtttctggttttgcttaaagtttgacccaactgtaaa
acgagaggggaaataaatacagcacagcgtgtgattgctaggattgctca
ctgaaatgtgagcaggcatacatttaaatacatctaaattcagagtatga
agacagtaaaagcttcaaaagtcctttgactagtgaactccaagtctaat
tttgattttagcaaaggtcatatatattatattattatatattattcaac
atatattttatatacatagatatatattatgcaacagatatatatcatat
aatattattaatatattatcaatattatatgaaaaataaaaataaattaa
aattaaattaaaatttaaaaattaaaaataaaaaagattgttccctccaa
ttttcataagcacacaaactgagttccaaatcctccgcacactattttct
aatcatgatcttgatcctgatgttttattgcagctggtctttgtattagt
gttcgtcattgacctgtatgtcgcttaactgaatagtaattatggttctg
ctcatccgcagtccatcagccagtgctacccgggttgattacctcctctg
tcttctcacgtgactacatttttccttgtgtcatgtcctgccctgggctg
tgctgttgtggtcagcttcgcatgcttgcttttccttctccctcctgaac
tcccaggcttttctatattgaattgccccgggactcattcttagaggatc
acttcaagcttgaatatgatctctgagtctgtgtctgttactgtctttaa
attctctctctctctctctctctctctctctctctctatctctctctctc
tgactctctctctctgtctctctgactctc

gaattccatagcattaagctgtggaggggaaaaccaaagcaatagagagc
tgggatgttgtttatggcagagacattaatggtgtggaaagctgaggtaa
agaataaatagaacaagcaaagaaggagtaccttatgcttgcagcttgta
gaggagttagatgtgtggggctacccaagcatgatggagactaatgatgt
ctctaggagttctagatgctggccatggagctgaagaatttggtggttgt
ctttctctgcttgatcttgcttgcagttgatcttttattattatatacca
caaattccttcttataacagaagtacttattctttctttattttttattt
ttattttttactccagattttattcccctccgggtctaccctctgactgt
ttcatatcccatacctcctcccctccccttgtctcctttataatcatgta
gaagtacatttttattcactaaaagatgaaggcaacttattgaaggttta
ctcatgtttccttaaaacacaatagataatttcattttcccataatatgt
gtttaaaaattccagtggccaatgagaaacatgttactactaaaacacac
acacacacacacacacacacacacacactcagaaaaaaaagaaagagaga
atatcctatttatgaaagggtagaatagaaagttggacatccaggaggag
gaaaagtctgagatcgagccacgtaagagctttgcctagggaaatgtgaa
aagagagacacatagtacatgagcacaggtaatcagtcacatggaagaat
gtagattaaaataagtgggataatttaagttatgctctaataagataaag
cctagctatgtggccagacatttataatatattttgagtctgagtcttat
ttctgtgggagaagacatgcataacttctacagcagagacagacgagaaa
ctgagaccccagacgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71745856_71746770
seq2: B6Ng01-240D21.b_46_975 (reverse)

seq1  ----------------GAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGA  34
                      ||||||||||| |||||||||||||| |||||||
seq2  GAGAGTCAGAGAGACAGAGAGAGAGAGTCAGAGAGAGAGAGATAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTAAAGACAGTAACAGACAC  84
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTAAAGACAGTAACAGACAC  100

seq1  AGACTCAGAGATCATATTCAAGCTTGAAGTGATCCTCTAAGAATGAGTCC  134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGAGATCATATTCAAGCTTGAAGTGATCCTCTAAGAATGAGTCC  150

seq1  CGGGGCAATTCAATATAGAAAAGCCTGGGAGTTCAGGAGGGAGAAGGAAA  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCAATTCAATATAGAAAAGCCTGGGAGTTCAGGAGGGAGAAGGAAA  200

seq1  AGCAAGCATGCGAAGCTGACCACAACAGCACAGCCCAGGGCAGGGACATG  234
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCAAGCATGCGAAGCTGACCACAACAGCACAGCCCAGGGCA-GGACATG  249

seq1  ACACAAGGAAAAATGTAGTCACGTGAGAAGACAGAGGAGGTAATCAACCC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGAAAAATGTAGTCACGTGAGAAGACAGAGGAGGTAATCAACCC  299

seq1  GGGTAGCACTGGCTGATGGACTGCGGATGAGCAGAACCATAATTACTATT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCACTGGCTGATGGACTGCGGATGAGCAGAACCATAATTACTATT  349

seq1  CAGTTAAGCGACATACAGGTCAATGACGAACACTAATACAAAGACCAGCT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGCGACATACAGGTCAATGACGAACACTAATACAAAGACCAGCT  399

seq1  GCAATAAAACATCAGGATCAAGATCATGATTAGAAAATAGTGTGCGGAGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAACATCAGGATCAAGATCATGATTAGAAAATAGTGTGCGGAGG  449

seq1  ATTTGGAACTCAGTTTGTGTGCTTATGAAAATTGGAGGGAACAATCTTTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACTCAGTTTGTGTGCTTATGAAAATTGGAGGGAACAATCTTTT  499

seq1  TTATTTTTAATTTTTAAATTTTAATTTAATTTTAATTTATTTTTATTTTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAATTTTTAAATTTTAATTTAATTTTAATTTATTTTTATTTTT  549

seq1  CATATAATATTGATAATATATTAATAATATTATATGATATATATCTGTTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATATTGATAATATATTAATAATATTATATGATATATATCTGTTG  599

seq1  CATAATATATATCTATGTATATAAAATATATGTTGAATAATATATAATAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATATATCTATGTATATAAAATATATGTTGAATAATATATAATAA  649

seq1  TATAATATATATGACCTTTGCTAAAATCAAAATTAGACTTGGAGTTCACT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATGACCTTTGCTAAAATCAAAATTAGACTTGGAGTTCACT  699

seq1  AGTCAAAGGACTTTTGAAGCTTTTACTGTCTTCATACTCTGAATTTAGAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGGACTTTTGAAGCTTTTACTGTCTTCATACTCTGAATTTAGAT  749

seq1  GTATTTAAATGTATGCCTGCTCACATTTCAGTGAGCAATCCTAGCAATCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAATGTATGCCTGCTCACATTTCAGTGAGCAATCCTAGCAATCA  799

seq1  CACGCTGTGCTGTATTTATTTCCCCTCTCGTTTTACAGTTGGGTCAAACT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGTGCTGTATTTATTTCCCCTCTCGTTTTACAGTTGGGTCAAACT  849

seq1  TTAAGCAAAACCAGAAACTGTAAAGGATATAGTTTAATTACTGTTAGTAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAAACCAGAAACTGTAAAGGATATAGTTTAATTACTGTTAGTAA  899

seq1  ACCCATTTGTGAAGCAGTGTGAATAGAATTC  915
      |||||||||||||||||||||||||||||||
seq2  ACCCATTTGTGAAGCAGTGTGAATAGAATTC  930


seq1: chr18_71613216_71614194
seq2: B6Ng01-240D21.g_67_1034

seq1  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50

seq1  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100

seq1  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150

seq1  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200

seq1  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250

seq1  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300

seq1  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350

seq1  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400

seq1  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450

seq1  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500

seq1  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550

seq1  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600

seq1  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650

seq1  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700

seq1  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750

seq1  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800

seq1  GTAGATTAAAATAAGTGGGATAAATTTAAGTTATGCTCTAATAAGATAAA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAGATTAAAATAAGTGGGAT-AATTTAAGTTATGCTCTAATAAGATAAA  849

seq1  GCCTAGCTATGTGGCCAAGACATTTATAATATATTTTGAGTCTGAGTCTT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCTAGCTATGTGGCC-AGACATTTATAATATATTTTGAGTCTGAGTCTT  898

seq1  ATTTCTGTTGGGAGGAAGAACCATGCATAACTTCTACAGCAAGAGACAGA  950
      ||||||| ||||| |||||  ||||||||||||||||||| |||||||||
seq2  ATTTCTG-TGGGA-GAAGA--CATGCATAACTTCTACAGC-AGAGACAGA  943

seq1  CAGAGAAACTGAGACACACCAGACAGACA  979
      | |||||||||||  || |||||| ||||
seq2  C-GAGAAACTGAG--ACCCCAGAC-GACA  968


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