BAC Information

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BAC

Clone NameB6Ng01-241H03
Chromosome18 (Build37)
Map Location 34,786,221 - 34,894,401
singlet/doubletdoublet
Overlap geneKif20a, Cdc23, Gfra3, Cdc25c
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8
Downstream geneLOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241H03.bB6Ng01-241H03.g
ACCGA051357GA051358
length1,101806
definitionB6Ng01-241H03.b B6Ng01-241H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,786,221 - 34,787,327)(34,893,599 - 34,894,401)
sequence
gaattcatgtgtgctagaatgatgtggaaccaaagaatggctgcacagga
ccacttaacgcttactgaggaatgagggagcagaagcatgcttcctagga
tctaggctgtttgtcctggcttacaggttaactcgagaatctgttacagg
ctctactggaggacacctcagagaaggtgaaagtttaccttcgaattcga
ccattcttgacttcagagttggaccgacaggaagatcaggtaggatttaa
ggtggatttaaggttgtagtaggagaggctcccaggagtgctcctttact
cggtaaaccctgctttctacctttccagggctgcgtctgcattgagaata
cagaaacccttgtgctgcaggcacccaaagactcctttgccttgaagagt
aatgagaggggagttggtcaggccactcacaaatttaccttttcccaggt
atgcaatactgctgtacgaacatttaggaaatgtatttcttctttaaaag
atttctactcgagtgtgggttctttacgtgtctgtatctgtaattttaag
acctttttatgtgctagtcagtgtgtgggatacttttatgtacatgagat
accactgatgttattactattactcttctccctggtaagaatacgatggc
acatattgcagtgacggggattttgctgaagctatagcgctattcagtgg
taaagacagagctgagatttggatctaccgtctccaaacccatgcttaca
cccaactgtacaaccccgtgtgtgtgcacagcactacacttaacagcatt
ccttaaagtgtttcattaggatgaactgaactagccggggcgatggaggc
tttagcattttaggaacaactgggagtccatcagaaagcctgcttgagca
ggctccagggaggattgtagctactcgtccggtccaggagaccgagggca
gaaacagtggtgcttctgagagatcggtctcttctagatatttgggccag
agtggacaggtggcttcttcatctgacatgagagatggtgagatgtgctc
aaggcagacttggcttcatctacacctatgggagtcactaactccgggga
g
gaattctcctccgagagaggccctcgaatgtgagtgtctgcatgagttga
agccggggatggaaacggatcttgagtgagacgtggcacacctgtttgga
cagagatgaacctaaatgaatgcctgccactgcagttccatgagcattag
ggtgatcgaaggaaggtgttcttacagttcaaaagaattgggcattggca
atgtaactccgctggcagagtacttgcctagaatatttagtccttgggct
tgatccccaatattgcataaagctgggcgtaattatacatccctatgatc
ccaacacagaaaagtaagggagtcgtggtgtgtcagggatacacaagcag
gaagatcagaaatttaaggttctaaatcagtctgagctagagatcctgtc
tcaaaaaaaaaaaaaagatccagacatggtggtccatgccgataatccca
gcccttaggagtcagaggcagatagataactgagtttgagaccagcctgg
tctacatagtgagaccctgtttcaaaaacaaaacaaaacaaaacaaaaca
atgaaaaacccatgtaaaacacacacacacacacacaaagggatttgggg
atgaagcttcaatagaggaaagggaagagtgtcactggaccttggttggt
aaacatggtgagagcctgtgtgtattggggtgggggtggctgtggattaa
acctgggtctctggccaggtgggtggtggcgcacgcctttagtctcagca
cttggggaggcagaaggcagtcagatttctgagttccaggccagccaggt
ctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34786221_34787327
seq2: B6Ng01-241H03.b_44_1143

seq1  GAATTCATGTGTGCTAGAATGATGTGGAACCAAAGAATGGCTGCACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTGCTAGAATGATGTGGAACCAAAGAATGGCTGCACAGGA  50

seq1  CCACTTAACGCTTACTGAGGAATGAGGGAGCAGAAGCATGCTTCCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAACGCTTACTGAGGAATGAGGGAGCAGAAGCATGCTTCCTAGGA  100

seq1  TCTAGGCTGTTTGTCCTGGCTTACAGGTTAACTCGAGAATCTGTTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGTTTGTCCTGGCTTACAGGTTAACTCGAGAATCTGTTACAGG  150

seq1  CTCTACTGGAGGACACCTCAGAGAAGGTGAAAGTTTACCTTCGAATTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGGAGGACACCTCAGAGAAGGTGAAAGTTTACCTTCGAATTCGA  200

seq1  CCATTCTTGACTTCAGAGTTGGACCGACAGGAAGATCAGGTAGGATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTGACTTCAGAGTTGGACCGACAGGAAGATCAGGTAGGATTTAA  250

seq1  GGTGGATTTAAGGTTGTAGTAGGAGAGGCTCCCAGGAGTGCTCCTTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTAAGGTTGTAGTAGGAGAGGCTCCCAGGAGTGCTCCTTTACT  300

seq1  CGGTAAACCCTGCTTTCTACCTTTCCAGGGCTGCGTCTGCATTGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAACCCTGCTTTCTACCTTTCCAGGGCTGCGTCTGCATTGAGAATA  350

seq1  CAGAAACCCTTGTGCTGCAGGCACCCAAAGACTCCTTTGCCTTGAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCCTTGTGCTGCAGGCACCCAAAGACTCCTTTGCCTTGAAGAGT  400

seq1  AATGAGAGGGGAGTTGGTCAGGCCACTCACAAATTTACCTTTTCCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGGGGAGTTGGTCAGGCCACTCACAAATTTACCTTTTCCCAGGT  450

seq1  ATGCAATACTGCTGTACGAACATTTAGGAAATGTATTTCTTCTTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACTGCTGTACGAACATTTAGGAAATGTATTTCTTCTTTAAAAG  500

seq1  ATTTCTACTCGAGTGTGGGTTCTTTACGTGTCTGTATCTGTAATTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTCGAGTGTGGGTTCTTTACGTGTCTGTATCTGTAATTTTAAG  550

seq1  ACCTTTTTATGTGCTAGTCAGTGTGTGGGATACTTTTATGTACATGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTATGTGCTAGTCAGTGTGTGGGATACTTTTATGTACATGAGAT  600

seq1  ACCACTGATGTTATTACTATTACTCTTCTCCCTGGTAAGAATACGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGATGTTATTACTATTACTCTTCTCCCTGGTAAGAATACGATGGC  650

seq1  ACATATTGCAGTGACGGGGATTTTGCTGAAGCTATAGCGCTATTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGCAGTGACGGGGATTTTGCTGAAGCTATAGCGCTATTCAGTGG  700

seq1  TAAAGACAGAGCTGAGATTTGGATCTACCGTCTCCAAACCCATGCTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAGCTGAGATTTGGATCTACCGTCTCCAAACCCATGCTTACA  750

seq1  CCCAACTGTACAACCCCGTGTGTGTGCACAGCACTACACTTAACAGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGTACAACCCCGTGTGTGTGCACAGCACTACACTTAACAGCATT  800

seq1  CCTT-AAGTGTTTCATTAGGATGAACTGAACTAGCCGGGGCGATGGAGGC  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGTGTTTCATTAGGATGAACTGAACTAGCCGGGGCGATGGAGGC  850

seq1  TTTAGCA-TTTAGGAACAACT-GGAGTCCATCAGGAAAGCCTGCTTGAGC  897
      ||||||| ||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTTAGCATTTTAGGAACAACTGGGAGTCCATCA-GAAAGCCTGCTTGAGC  899

seq1  AGGCTCCAGGGAGGATTGTAGCTACTCGTCCGGTCCAGGAGACGGAGGGC  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGCTCCAGGGAGGATTGTAGCTACTCGTCCGGTCCAGGAGACCGAGGGC  949

seq1  AGAAACAGTGTGGCTTCTGAGAGATCGGTCTCTTTCTAGATATTTGGGCC  997
      ||||||||||  |||||||||||||||||||| |||||||||||||||||
seq2  AGAAACAGTGGTGCTTCTGAGAGATCGGTCTC-TTCTAGATATTTGGGCC  998

seq1  AGAAGTGGGACAGGTGGCCTTCTTCAATCTGACCATGAAGGAGATGGTGA  1047
      || ||| |||||||||| ||||||| |||||| |||||  ||||||||||
seq2  AG-AGT-GGACAGGTGG-CTTCTTC-ATCTGA-CATGA--GAGATGGTGA  1041

seq1  AGGATGTGCTCAAAGGGCAGAACTGGC-TCATCTACACCTAT-GGAGTCA  1095
        |||||||||||  ||||||  |||| |||||||||||||| |||||||
seq2  --GATGTGCTCAA--GGCAGACTTGGCTTCATCTACACCTATGGGAGTCA  1087

seq1  CCAACT-CGGGGA  1107
      | |||| ||||||
seq2  CTAACTCCGGGGA  1100

seq1: chr18_34893599_34894401
seq2: B6Ng01-241H03.g_66_871 (reverse)

seq1  CTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGACTGCC-TCTGCCT-  48
      ||||||||| ||||||||| ||||||||||||||||||||| ||||||| 
seq2  CTGTAGACCTGGCTGGCCTGGAACTCAGAAATCTGACTGCCTTCTGCCTC  50

seq1  CCCAAGTGCTGAGACTAAAGGCGTGCGCCACCA-CCACCTGGCAGAAGAC  97
      ||||||||||||||||||||||||||||||||| |||||||||   ||||
seq2  CCCAAGTGCTGAGACTAAAGGCGTGCGCCACCACCCACCTGGCCAGAGAC  100

seq1  CCAGGTTTAATCCACAGCCACCCCCACCCCAATACACACAGGCTCTCACC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTAATCCACAGCCACCCCCACCCCAATACACACAGGCTCTCACC  150

seq1  ATGTTTACCAACCAAGGTCCAGTGACACTCTTCCCTTTCCTCTATTGAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACCAACCAAGGTCCAGTGACACTCTTCCCTTTCCTCTATTGAAG  200

seq1  CTTCATCCCCAAATCCCTTTGTGTGTGTGTGTGTGTGTTTTACATGGGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCCAAATCCCTTTGTGTGTGTGTGTGTGTGTTTTACATGGGTT  250

seq1  TTTCATTGTTTTGTTTTGTTTTGTTTTGTTTTTGAAACAGGGTCTCACTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTTTGTTTTGTTTTGTTTTGTTTTTGAAACAGGGTCTCACTA  300

seq1  TGTAGACCAGGCTGGTCTCAAACTCAGTTATCTATCTGCCTCTGACTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGTCTCAAACTCAGTTATCTATCTGCCTCTGACTCCT  350

seq1  AAGGGCTGGGATTATCGGCATGGACCACCATGTCTGGATCTTTTTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGGATTATCGGCATGGACCACCATGTCTGGATCTTTTTTTTTT  400

seq1  TTTTGAGACAGGATCTCTAGCTCAGACTGATTTAGAACCTTAAATTTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGATCTCTAGCTCAGACTGATTTAGAACCTTAAATTTCTG  450

seq1  ATCTTCCTGCTTGTGTATCCCTGACACACCACGACTCCCTTACTTTTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTGCTTGTGTATCCCTGACACACCACGACTCCCTTACTTTTCTG  500

seq1  TGTTGGGATCATAGGGATGTATAATTACGCCCAGCTTTATGCAATATTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATCATAGGGATGTATAATTACGCCCAGCTTTATGCAATATTGG  550

seq1  GGATCAAGCCCAAGGACTAAATATTCTAGGCAAGTACTCTGCCAGCGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGCCCAAGGACTAAATATTCTAGGCAAGTACTCTGCCAGCGGAG  600

seq1  TTACATTGCCAATGCCCAATTCTTTTGAACTGTAAGAACACCTTCCTTCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCCAATGCCCAATTCTTTTGAACTGTAAGAACACCTTCCTTCG  650

seq1  ATCACCCTAATGCTCATGGAACTGCAGTGGCAGGCATTCATTTAGGTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTAATGCTCATGGAACTGCAGTGGCAGGCATTCATTTAGGTTCA  700

seq1  TCTCTGTCCAAACAGGTGTGCCACGTCTCACTCAAGATCCGTTTCCATCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCAAACAGGTGTGCCACGTCTCACTCAAGATCCGTTTCCATCC  750

seq1  CCGGCTTCAACTCATGCAGACACTCACATTCGAGGGCCTCTCTCGGAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTCAACTCATGCAGACACTCACATTCGAGGGCCTCTCTCGGAGGA  800

seq1  GAATTC  803
      ||||||
seq2  GAATTC  806