BAC Information

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BAC

Clone NameB6Ng01-242D22
Chromosome18 (Build37)
Map Location 39,091,755 - 39,092,859
singlet/doubletsinglet
Overlap geneEG545253
Upstream geneDiap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1
Downstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D22.bB6Ng01-242D22.g
ACCGA051942GA051943
length5491,113
definitionB6Ng01-242D22.b B6Ng01-242D22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attcataactctagaatataggaaaatatgagacagtcttttgctaccat
taattacaataaaaaaatctcccctgcaggtggcctcataacactctgct
gaatgtcagccagctagtttagttggtaacttaaggagaggaacaggctt
ccctttgccctcttgtagtaacagtacaagaattggttttctccaacagt
gtctcactgggaaacaaaccacacttaagaggaggccccatgcctagcac
tagatagccaacacaaaagaagttcaatcctacttttggaggattttttt
ttttgattggttggttttgttttattttggatttttgtctcataatgatt
tgtctggacattttttcaaccttagaggttgtttatgtaatttggtttct
gcttttgagtttttatgggatttctgagtgtgcaagtgtgtgtgtgtgac
ctgcctgtgtttcatgtgcattttcttctgcattatctttggctctttgt
ttgttttgtcctattctagtttgtttgtttgggggtttaaggaggttgt
gaattcattctatagcactcctcctcctccctgtcctctggctctgactg
acattcttacagcctcttctgccacattctccgagccttgaaggggttgt
agagatgacccttaacataccaattttaatgtacagatggtgtttttaga
attgtttcagaaacagcaaaaattcatgaagattgctgctcgccagtgct
gtctattgctgcctgaaagcaggtcatgatccatgcactgagtatctacc
atttgtcaggcctttagataccgaatacaaaaacactgagtaaaatccca
atggttacatgctgaaacctttgtcgtggcttcctatagggtattgagtg
aaggaagcagattagtaattacttaaataagccacaaaaattcaggttgg
ttaagtactagcaaaaaggacatttagtgaggtaagaatgcacaataggc
attggccccaggagccaggctcatccttggtaaaacgagagaaagtggct
ttagagacatgaactctaaagcaagaataatgctccaagaatctggacca
aatggtggagaaagcgctgtctagaaagggcttccagacaggtaagaaaa
agggactgtcctatttggtttcttgttctgtgataaaacaccaatcaacc
aaaagcttttgcatgggcatctgactttggagaaaattctcaccaaattc
cttattatggctacctctagagggcatgagaatcaagcaaatccagctag
gtcacccgtgaaggctttccacctaatcccaccccatcctccaactccga
ggctagattctcacagtgtgctctctccatcactgttaacattcaagcac
ttttccaaactacagccttcaacttcaaagacaatatccaccacttattg
ttaaatgcaaggtcctttcaaattcacctgcaaccacacatcataagctc
ctctgctttccctgtcctagccccatttcctgaaaacccagcctacgtcc
ttaccaggaacaccctacccccactgacatctgatgcctccagttctaac
tcaaggaaaagactaaggatatgctacagttataaattattcttccaagt
gacttggaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39091755_39092859
seq2: B6Ng01-242D22.g_66_1178

seq1  GAATTCATTCTATAGCACTCCTCCTCCTCCCTGTCCTCTGGCTCTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTATAGCACTCCTCCTCCTCCCTGTCCTCTGGCTCTGACTG  50

seq1  ACATTCTTACAGCCTCTTCTGCCACATTCTCCGAGCCTTGAAGGGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTACAGCCTCTTCTGCCACATTCTCCGAGCCTTGAAGGGGTTGT  100

seq1  AGAGATGACCCTTAACATACCAATTTTAATGTACAGATGGTGTTTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGACCCTTAACATACCAATTTTAATGTACAGATGGTGTTTTTAGA  150

seq1  ATTGTTTCAGAAACAGCAAAAATTCATGAAGATTGCTGCTCGCCAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAGAAACAGCAAAAATTCATGAAGATTGCTGCTCGCCAGTGCT  200

seq1  GTCTATTGCTGCCTGAAAGCAGGTCATGATCCATGCACTGAGTATCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGCTGCCTGAAAGCAGGTCATGATCCATGCACTGAGTATCTACC  250

seq1  ATTTGTCAGGCCTTTAGATACCGAATACAAAAACACTGAGTAAAATCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAGGCCTTTAGATACCGAATACAAAAACACTGAGTAAAATCCCA  300

seq1  ATGGTTACATGCTGAAACCTTTGTCGTGGCTTCCTATAGGGTATTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACATGCTGAAACCTTTGTCGTGGCTTCCTATAGGGTATTGAGTG  350

seq1  AAGGAAGCAGATTAGTAATTACTTAAATAAGCCACAAAAATTCAGGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCAGATTAGTAATTACTTAAATAAGCCACAAAAATTCAGGTTGG  400

seq1  TTAAGTACTAGCAAAAAGGACATTTAGTGAGGTAAGAATGCACAATAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTACTAGCAAAAAGGACATTTAGTGAGGTAAGAATGCACAATAGGC  450

seq1  ATTGGCCCCAGGAGCCAGGCTCATCCTTGGTAAAACGAGAGAAAGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCCAGGAGCCAGGCTCATCCTTGGTAAAACGAGAGAAAGTGGCT  500

seq1  TTAGAGACATGAACTCTAAAGCAAGAATAATGCTCCAAGAATCTGGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACATGAACTCTAAAGCAAGAATAATGCTCCAAGAATCTGGACCA  550

seq1  AATGGTGGAGAAAGCGCTGTCTAGAAAGGGCTTCCAGACAGGTAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGAGAAAGCGCTGTCTAGAAAGGGCTTCCAGACAGGTAAGAAAA  600

seq1  AGGGACTGTCCTATTTGGTTTCTTGTTCTGTGATAAAACACCAATCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGTCCTATTTGGTTTCTTGTTCTGTGATAAAACACCAATCAACC  650

seq1  AAAAGCTTTTGCATGGGCATCTGACTTTGGAGAAAATTCTCACCAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTTGCATGGGCATCTGACTTTGGAGAAAATTCTCACCAAATTC  700

seq1  CTTATTATGGCTACCTCTAGAGGGCATGAGAATCAAGCAAATCCAGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATGGCTACCTCTAGAGGGCATGAGAATCAAGCAAATCCAGCTAG  750

seq1  GTCACCCGTGAAGGCTTTCCACCTAATCCCACCCCATCCTCCAACTCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCGTGAAGGCTTTCCACCTAATCCCACCCCATCCTCCAACTCCGA  800

seq1  GGCTAGATTCTCACAGTGTGCTCTCTCCATCACTGTTAACATTCAAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATTCTCACAGTGTGCTCTCTCCATCACTGTTAACATTCAAGCAC  850

seq1  -TTTCCAAACTACAGCCTTCAACTTCAAAGACAATATCCACCACTTATTG  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAACTACAGCCTTCAACTTCAAAGACAATATCCACCACTTATTG  900

seq1  TTAAATGCAAGGTCC-TTCAAATTCACCTGCAACCACACATCATAAGCTC  948
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAAATGCAAGGTCCTTTCAAATTCACCTGCAACCACACATCATAAGCTC  950

seq1  CTCTGCTTTCCCTGTCCTAGCCCCATTTCCTGAAAA-CCAGCCTACGTCC  997
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCTGCTTTCCCTGTCCTAGCCCCATTTCCTGAAAACCCAGCCTACGTCC  1000

seq1  TTACCCAGGAACACCCTA-CCCCACTGACATCCTGATGCCCCCAGTTCTA  1046
      ||| |||||||||||||| |||||||||||| |||||||| |||||||||
seq2  TTA-CCAGGAACACCCTACCCCCACTGACAT-CTGATGCCTCCAGTTCTA  1048

seq1  ACTCA--GGAAAGACT-AGGATATGCTACAGTTATAAATAAT--CTCCCA  1091
      |||||  | ||||||| |||||||||||||||||||||| ||   ||| |
seq2  ACTCAAGGAAAAGACTAAGGATATGCTACAGTTATAAATTATTCTTCCAA  1098

seq1  GTGACTT-GAAGTAA  1105
      ||||||| |||||||
seq2  GTGACTTGGAAGTAA  1113