BAC Information

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BAC

Clone NameB6Ng01-242M05
Chromosome18 (Build37)
Map Location 14,646,731 - 14,685,653
singlet/doubletdoublet
Overlap geneLOC100040129
Upstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096
Downstream geneEG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242M05.bB6Ng01-242M05.g
ACCGA052321GA052322
length973989
definitionB6Ng01-242M05.b B6Ng01-242M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,685,116 - 14,685,653)(14,646,731 - 14,647,719)
sequence
gaattctgcaagagaatcatagagatattgacttagtaagttgacatcag
tgagaggcagaatcaattcctagaatttcctatcaggcttcttgtgatct
gaagtaattaaatgtatttattgcttagacaatgttaggatttctgtagt
ttttagccaaaagcaatcttaccagatacaatgggttttcttttttgtcg
atttttgtattaaagcatgttaaaaaaaaaaaaaaaaaacaggtgaactt
ctctatttgtggctgtagttgcaattttttgaattagactgtaatttgtc
aaaggagagaaggagatttttttaatcccctccctttcttcctctcttct
tttcttcctggctgaattctctttaaaattgtcagctatagccaaactgc
attctgaataatctgtttatatccatagattcatgctgctcccgatctca
gttaaagaaacttgtgtttcaggggtgagagttgggcagagatgcatagc
tggccgaagtgctgagagaacaggaatgttgggtcctcagccaggaatgt
ccctcagccctgtacggacatctaaatcgccgtctgagaggcaggagaaa
ccttagaagataaggctgaaagaacataagacctggagggtgggaaagtg
ctgcgaagtgctgtcctctgggtatgacgtggctgttagtcatgagcaca
caacgttggtgatggcctgcacaatgcctgagaaagattcggcccttcag
cgttccatcaggggtgagagagcagctcaggaggctcctcctcttccggg
aggtacagccaataaaatggttgctagggaaagggggagtcattttcttc
aatgatgttgacactgaagttacctacattgcctgttcttatacaagcaa
cagtaaacctcagcggggtacacaaaaggaatgaagggaggagggggact
gattagaaagaggagaatgggga
gaattccacaccctcctgcttccatctcctgctcatgccagtgggaatgg
aactcagtggaatgaagtagtattgaggaatcacttggcctgtgacttgt
gtcaaagatgccccgggcaggaggatcatatgaataaagtaggtaggtcc
ctaatcactatatgtggttcaatgtgttcaaatatgggagctgagcaaga
aacactgtgtctgcccagtgtgggctatcacacacgtaagctcttcagaa
aggcaatcagaaagcagatgttcactccagccaacaagatgcagggtgtg
tcttttcaatctcatggtgaggctttcaaggaaaagtaaatcaagtataa
gaaaagacagcaagaatgggaagctggctaagagtgcctgccaaagccaa
aagtagtgtcaatgggagaaagtggaaaagatcgctaaactctaatgtct
ttatttctcctgaaaaggagccttaaattttctttatacagaggtaacca
aaagagagcaatgactgatttggggtggtaggagtattatttacaaggcc
aggctgtttagagctctccttgtattcttggtaatttgattgtttggtca
cgcctcccaataagtgaaatgttacactggagtatttgtttaaacctcgc
agcttccgatacagtaggttgccgagtgatgtttgctaatggcgcacatt
cagtaattcctataatgtgaaatctcagccagatttaatgtttcatttcc
ctgggattcactctgaaattattacagacattatgtattccactccctgg
acttgaaattaatttcaaaaccaagaaaaagtgcatccatttgtgggcct
tgagggagtttagatcagtaacgttccatttgtctgaagtttctgaagtt
tgaaatacctgttcactttcctgcatttgatcccgattgaagaaacaagg
tgccactaaccaagaccttcatttttttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14685116_14685653
seq2: B6Ng01-242M05.b_43_580 (reverse)

seq1  GAGGACCCAACATTCCTGTTCTCTCAGCACTTCGGCCAGCTATGCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCAACATTCCTGTTCTCTCAGCACTTCGGCCAGCTATGCATCTC  50

seq1  TGCCCAACTCTCACCCCTGAAACACAAGTTTCTTTAACTGAGATCGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACTCTCACCCCTGAAACACAAGTTTCTTTAACTGAGATCGGGAG  100

seq1  CAGCATGAATCTATGGATATAAACAGATTATTCAGAATGCAGTTTGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAATCTATGGATATAAACAGATTATTCAGAATGCAGTTTGGCTA  150

seq1  TAGCTGACAATTTTAAAGAGAATTCAGCCAGGAAGAAAAGAAGAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACAATTTTAAAGAGAATTCAGCCAGGAAGAAAAGAAGAGAGGAA  200

seq1  GAAAGGGAGGGGATTAAAAAAATCTCCTTCTCTCCTTTGACAAATTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGGGGATTAAAAAAATCTCCTTCTCTCCTTTGACAAATTACAG  250

seq1  TCTAATTCAAAAAATTGCAACTACAGCCACAAATAGAGAAGTTCACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAAAAAATTGCAACTACAGCCACAAATAGAGAAGTTCACCTGT  300

seq1  TTTTTTTTTTTTTTTTTAACATGCTTTAATACAAAAATCGACAAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTAACATGCTTTAATACAAAAATCGACAAAAAAGA  350

seq1  AAACCCATTGTATCTGGTAAGATTGCTTTTGGCTAAAAACTACAGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATTGTATCTGGTAAGATTGCTTTTGGCTAAAAACTACAGAAATC  400

seq1  CTAACATTGTCTAAGCAATAAATACATTTAATTACTTCAGATCACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTGTCTAAGCAATAAATACATTTAATTACTTCAGATCACAAGAA  450

seq1  GCCTGATAGGAAATTCTAGGAATTGATTCTGCCTCTCACTGATGTCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAGGAAATTCTAGGAATTGATTCTGCCTCTCACTGATGTCAACT  500

seq1  TACTAAGTCAATATCTCTATGATTCTCTTGCAGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTCAATATCTCTATGATTCTCTTGCAGAATTC  538

seq1: chr18_14646731_14647719
seq2: B6Ng01-242M05.g_67_1055

seq1  GAATTCCACACCCTCCTGCTTCCATCTCCTGCTCATGCCAGTGGGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCTCCTGCTTCCATCTCCTGCTCATGCCAGTGGGAATGG  50

seq1  AACTCAGTGGAATGAAGTAGTATTGAGGAATCACTTGGCCTGTGACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTGGAATGAAGTAGTATTGAGGAATCACTTGGCCTGTGACTTGT  100

seq1  GTCAAAGATGCCCCGGGCAGGAGGATCATATGAATAAAGTAGGTAGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGATGCCCCGGGCAGGAGGATCATATGAATAAAGTAGGTAGGTCC  150

seq1  CTAATCACTATATGTGGTTCAATGTGTTCAAATATGGGAGCTGAGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACTATATGTGGTTCAATGTGTTCAAATATGGGAGCTGAGCAAGA  200

seq1  AACACTGTGTCTGCCCAGTGTGGGCTATCACACACGTAAGCTCTTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGTCTGCCCAGTGTGGGCTATCACACACGTAAGCTCTTCAGAA  250

seq1  AGGCAATCAGAAAGCAGATGTTCACTCCAGCCAACAAGATGCAGGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATCAGAAAGCAGATGTTCACTCCAGCCAACAAGATGCAGGGTGTG  300

seq1  TCTTTTCAATCTCATGGTGAGGCTTTCAAGGAAAAGTAAATCAAGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAATCTCATGGTGAGGCTTTCAAGGAAAAGTAAATCAAGTATAA  350

seq1  GAAAAGACAGCAAGAATGGGAAGCTGGCTAAGAGTGCCTGCCAAAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGCAAGAATGGGAAGCTGGCTAAGAGTGCCTGCCAAAGCCAA  400

seq1  AAGTAGTGTCAATGGGAGAAAGTGGAAAAGATCGCTAAACTCTAATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGTCAATGGGAGAAAGTGGAAAAGATCGCTAAACTCTAATGTCT  450

seq1  TTATTTCTCCTGAAAAGGAGCCTTAAATTTTCTTTATACAGAGGTAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCCTGAAAAGGAGCCTTAAATTTTCTTTATACAGAGGTAACCA  500

seq1  AAAGAGAGCAATGACTGATTTGGGGTGGTAGGAGTATTATTTACAAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCAATGACTGATTTGGGGTGGTAGGAGTATTATTTACAAGGCC  550

seq1  AGGCTGTTTAGAGCTCTCCTTGTATTCTTGGTAATTTGATTGTTTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTAGAGCTCTCCTTGTATTCTTGGTAATTTGATTGTTTGGTCA  600

seq1  CGCCTCCCAATAAGTGAAATGTTACACTGGAGTATTTGTTTAAACCTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCCAATAAGTGAAATGTTACACTGGAGTATTTGTTTAAACCTCGC  650

seq1  AGCTTCCGATACAGTAGGTTGCCGAGTGATGTTTGCTAATGGCGCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCGATACAGTAGGTTGCCGAGTGATGTTTGCTAATGGCGCACATT  700

seq1  CAGTAATTCCTATAATGTGAAATCTCAGCCAGATTTAATGTTTCATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTCCTATAATGTGAAATCTCAGCCAGATTTAATGTTTCATTTCC  750

seq1  CTGGGATTCACTCTGAAATTATTACAGACATTATGTATTCCACTCCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTCACTCTGAAATTATTACAGACATTATGTATTCCACTCCCTGG  800

seq1  ACTTGAAATTAATTTCAAAACCAAGAAAAAGTGCATCCATTTGTGGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAATTAATTTCAAAACCAAGAAAAAGTGCATCCATTTGTGGGCCT  850

seq1  TGAGGGAGTTTAGATCAGTAACGTTCCATTTGTCTGAAGTTTCTGAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTTTAGATCAGTAACGTTCCATTTGTCTGAAGTTTCTGAAGTT  900

seq1  TGAAATACCTGTTCACTTTCCTGCATTTGATCCCGATTGAAGAAAACAAG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAATACCTGTTCACTTTCCTGCATTTGATCCCGATTGAAG-AAACAAG  949

seq1  GTGCCACT-ACCAAGACCTTCATTTTTTTGGGGGGGGGGG  989
      |||||||| |||||||||||||||||||||||||||||||
seq2  GTGCCACTAACCAAGACCTTCATTTTTTTGGGGGGGGGGG  989