BAC Information

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BAC

Clone NameB6Ng01-243I17
Chromosome18 (Build37)
Map Location 55,900,886 - 56,078,888
singlet/doubletdoublet
Overlap geneLOC667401, LOC667409, LOC629043
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I17.bB6Ng01-243I17.g
ACCGA052900GA052901
length1,1511,167
definitionB6Ng01-243I17.b B6Ng01-243I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,900,886 - 55,902,039)(56,077,712 - 56,078,888)
sequence
gaattcatcttcatcagaccagacacagagaacaatgagtaaagtcactt
tgcttggagaagcaaaggaagataagatcaatcataaaacacagagaaaa
tataaaacccaattaaagtgggattttacaaaagaccaagagaagaatct
gattctttaaagagcagcaataaggagaaacaggttccacaaaaacacca
gagaataacatatataaaacaacaggtaaagtctttcaaggtaaatataa
cccccccatacaaatgtattaatttctctcattaaaatatttagactgac
ataatataaataaattgaggacatattaatgagggccactgatatgactc
agcagccaaagtcccttgctcccaagaccagatttgatcccaaggactca
cagagaggaaggaaaataatctgctcttgcaagttgtactctgaccttaa
ctaatgcagcatggcacacataccccacacacaaatatttcttataaaaa
tatttatttaaaaatgtattttaaaaaaagtgatgtatcaattcctccta
ccccacactaataaaacttctcattgctaaaagcatatacagaatcaaag
gagatgaaataaagattcgtgagaatgggaaccaaaaatgaatggacata
gctatacctataccaaataaaccagactttaaatcaaacactgtaaaact
aggaaagaaggtgactgaatgatgataaagggataaactcaaggaaaaac
tataaaaatgcaggcattcagtggcagatactgtattacaaaggaaacat
tattagatccaatagtgcagtcatagtgggacttcaattcaccactgcta
ccagagtgtcgagagcccagaccaaagagaaaatcaggaagaaaatatca
aagacagtctttacagttcagaggagcctagcatatctatagaacctttc
tccctatggatgccaaatatacattttttctcctgaacatacagaacatc
ttctaggatgtatgccatgtgttagactactacagaacctttttatatac
tctaagcaagcattacacctatttattttcaaagttctcaccccaggaaa
agaagggcaccccccaaattcatctattaagtcaggatgcctgacctcca
a
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggaaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctta
gaaaattggacatagtactgatccagcaatacctctcctgggcatatatc
cagaagatgtcccaaccggtaagagagactttttttttattgacctgaca
ctctggatattaagtttatgtctgaagtataggtaccacttactgtctcc
tattttgcatattattcttaatttttcttgcacatgcataaataagttta
tgaaaaatcatgaatcatcacaattctccttgacaagaaataatattcta
aagataccaggaaatctatgactgctagcatgaccttcctttatatttta
attttcatgagaggaaagtgagttattctaagacccacattgactttgag
tctacctctcatactaagtgtctccatttatgagtccacgggaagatgag
aatacttctgagtgatactgcatacactctcgaatgctgggcacatgggt
gctgacttttaatcacagcacttgtgaggcagaggcaagtggatctcagc
gaatccaagggcagcctaggttacatagagaaaccctgtaaaatataaaa
taaataaaaggaaggaagaaggaaaggaagagagaaagaaagagaaacga
aaagaatgtacttttaactataaaagaatagtcttactttctgtatcttt
ctctttttatattagtacttgggaagagcagaatagaacttataaattct
atttcttgatatattcacatagctgataacttcagtaataataaattcaa
atctctatctaggagaaacaggagcaaaaaaggcaggattttacttgtta
tttttttgtgctagggaacaagaccggtgctatgattaaagttatttctt
aagatacttaagaaatctctagataaaaggaaatggatacatctcaataa
acccacttatcccaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55900886_55902039
seq2: B6Ng01-243I17.b_44_1194

seq1  GAATTCATCTTCATCAGACCAGACACAGAGAACAATGAGTAAAGTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCATCAGACCAGACACAGAGAACAATGAGTAAAGTCACTT  50

seq1  TGCTTGGAGAAGCAAAGGAAGATAAGATCAATCATAAAACACAGAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAGAAGCAAAGGAAGATAAGATCAATCATAAAACACAGAGAAAA  100

seq1  TATAAAACCCAATTAAAGTGGGATTTTACAAAAGACCAAGAGAAGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCCAATTAAAGTGGGATTTTACAAAAGACCAAGAGAAGAATCT  150

seq1  GATTCTTTAAAGAGCAGCAATAAGGAGAAACAGGTTCCACAAAAACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTAAAGAGCAGCAATAAGGAGAAACAGGTTCCACAAAAACACCA  200

seq1  GAGAATAACATATATAAAACAACAGGTAAAGTCTTTCAAGGTAAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAACATATATAAAACAACAGGTAAAGTCTTTCAAGGTAAATATAA  250

seq1  CCCCCCCATACAAATGTATTAATTTCTCTCATTAAAATATTTAGACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCATACAAATGTATTAATTTCTCTCATTAAAATATTTAGACTGAC  300

seq1  ATAATATAAATAAATTGAGGACATATTAATGAGGGCCACTGATATGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAATAAATTGAGGACATATTAATGAGGGCCACTGATATGACTC  350

seq1  AGCAGCCAAAGTCCCTTGCTCCCAAGACCAGATTTGATCCCAAGGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAAAGTCCCTTGCTCCCAAGACCAGATTTGATCCCAAGGACTCA  400

seq1  CAGAGAGGAAGGAAAATAATCTGCTCTTGCAAGTTGTACTCTGACCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGAAGGAAAATAATCTGCTCTTGCAAGTTGTACTCTGACCTTAA  450

seq1  CTAATGCAGCATGGCACACATACCCCACACACAAATATTTCTTATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCAGCATGGCACACATACCCCACACACAAATATTTCTTATAAAAA  500

seq1  TATTTATTTAAAAATGTATTTTAAAAAAAGTGATGTATCAATTCCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAAAAATGTATTTTAAAAAAAGTGATGTATCAATTCCTCCTA  550

seq1  CCCCACACTAATAAAACTTCTCATTGCTAAAAGCATATACAGAATCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACTAATAAAACTTCTCATTGCTAAAAGCATATACAGAATCAAAG  600

seq1  GAGATGAAATAAAGATTCGTGAGAATGGGAACCAAAAATGAATGGACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAATAAAGATTCGTGAGAATGGGAACCAAAAATGAATGGACATA  650

seq1  GCTATACCTATACCAAATAAACCAGACTTTAAATCAAACACTGTAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACCTATACCAAATAAACCAGACTTTAAATCAAACACTGTAAAACT  700

seq1  AGGAAAGAAGGTGACTGAATGATGATAAAGGGATAAACTCAAGGAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAGGTGACTGAATGATGATAAAGGGATAAACTCAAGGAAAAAC  750

seq1  TATAAAAATGCAGGCATTCAGTGGCAGATACTGTATTACAAAGGAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATGCAGGCATTCAGTGGCAGATACTGTATTACAAAGGAAACAT  800

seq1  TATTAGATCCAATAGTGCAGTCATAGTGGGACTTCAATTCACCACTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATCCAATAGTGCAGTCATAGTGGGACTTCAATTCACCACTGCTA  850

seq1  CCAGAGTGTCGAGAGCCCAGACCAAAGAGAAAATCAGGAAGAAAATATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGTCGAGAGCCCAGACCAAAGAGAAAATCAGGAAGAAAATATCA  900

seq1  AAGACAGTCTTTACAGTTCAGAGGAGCCTAGCATATCTATAGAACCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCTTTACAGTTCAGAGGAGCCTAGCATATCTATAGAACCTTTC  950

seq1  TCCCTATGGATGCCAAATATACATTTTTTCTCCTGAACATACAGAACATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGGATGCCAAATATACATTTTTTCTCCTGAACATACAGAACATC  1000

seq1  TTCTAGGATGTATGCCATGTGTTAGACTACTACAGAACCTTTTTATATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGATGTATGCCATGTGTTAGACTACTACAGAACCTTTTTATATAC  1050

seq1  TCTTAGCAAAGCATTAACACTATTTATTTTCAAAAGTTTCTCACCACAGA  1100
      ||| ||| ||||||||   |||||||||||||||   |||||||| ||| 
seq2  TCTAAGC-AAGCATTACACCTATTTATTTTCAAA--GTTCTCACCCCAGG  1097

seq1  AAAAG-AGGGCA-CCCCCAAATTCATTCTATAAAGTCAGGATTGCCCTGA  1148
      ||||| |||||| |||||||||||| ||||| ||||||||||   |||||
seq2  AAAAGAAGGGCACCCCCCAAATTCA-TCTATTAAGTCAGGAT--GCCTGA  1144

seq1  -CTCCAA  1154
       ||||||
seq2  CCTCCAA  1151

seq1: chr18_56077712_56078888
seq2: B6Ng01-243I17.g_65_1231 (reverse)

seq1  AGTTGGGATAAGTGGTGTTTATTGAGAATGTAT-CATTTCTCTTTTATCT  49
      ||||||||||||||| |||||||||| |||||| |||||| |||||||||
seq2  AGTTGGGATAAGTGG-GTTTATTGAG-ATGTATCCATTTC-CTTTTATCT  47

seq1  TAAGAATTCTTTAAAGTATCTTAAGAA--TACTTTAAATTCATAGCA-CG  96
        ||| |||||  ||||||||||||||   |||||||  |||||||| ||
seq2  AGAGATTTCTT--AAGTATCTTAAGAAATAACTTTAA--TCATAGCACCG  93

seq1  GTCTTGTCCCTAAGCACAAAAAAAAAAAAAAAAAAAAGTAAAAATCCTGC  146
      ||||||| ||  |||||       ||||||| || |||| ||||||||||
seq2  GTCTTGTTCCCTAGCAC-------AAAAAAATAACAAGT-AAAATCCTGC  135

seq1  CTTTTTTGCTTCTGTTTCTCCTAGATAGAGATTTGAATTTAATTATTACT  196
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CTTTTTTGCTCCTGTTTCTCCTAGATAGAGATTTGAATTT-ATTATTACT  184

seq1  GAAGTTATCAGCTATGGTGAATATATCAAGAAATAGAATTTATAAGTTCT  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCAGCTAT-GTGAATATATCAAGAAATAGAATTTATAAGTTCT  233

seq1  ATTCTGCTCTT-CCAAGTACTAATATAAAAAGAGAAAGATACAG-AAGTA  294
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  ATTCTGCTCTTCCCAAGTACTAATATAAAAAGAGAAAGATACAGAAAGTA  283

seq1  AGACTATTCTTTTATAGTT-AAAGTACATTCTTTTCGTTTCTCTTTCTTT  343
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGACTATTCTTTTATAGTTAAAAGTACATTCTTTTCGTTTCTCTTTCTTT  333

seq1  CTCTCTTCCTTTCCTTCTTCCTTCCTTTTATTTATTTTATATTTTACAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTTTCCTTCTTCCTTCCTTTTATTTATTTTATATTTTACAGG  383

seq1  GTTTCTCTATGTAACCTAGGCTGCCCTTGGATTCGCTGAGATCCACTTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTATGTAACCTAGGCTGCCCTTGGATTCGCTGAGATCCACTTGC  433

seq1  CTCTGCCTCACAAGTGCTGTGATTAAAAGTCAGCACCCATGTGCCCAGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCACAAGTGCTGTGATTAAAAGTCAGCACCCATGTGCCCAGCA  483

seq1  TTCGAGAGTGTATGCAGTATCACTCAGAAGTATTCTCATCTTCCCGTGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGAGTGTATGCAGTATCACTCAGAAGTATTCTCATCTTCCCGTGGA  533

seq1  CTCATAAATGGAGACACTTAGTATGAGAGGTAGACTCAAAGTCAATGTGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAATGGAGACACTTAGTATGAGAGGTAGACTCAAAGTCAATGTGG  583

seq1  GTCTTAGAATAACTCACTTTCCTCTCATGAAAATTAAAATATAAAGGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAATAACTCACTTTCCTCTCATGAAAATTAAAATATAAAGGAAG  633

seq1  GTCATGCTAGCAGTCATAGATTTCCTGGTATCTTTAGAATATTATTTCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCTAGCAGTCATAGATTTCCTGGTATCTTTAGAATATTATTTCTT  683

seq1  GTCAAGGAGAATTGTGATGATTCATGATTTTTCATAAACTTATTTATGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAGAATTGTGATGATTCATGATTTTTCATAAACTTATTTATGCA  733

seq1  TGTGCAAGAAAAATTAAGAATAATATGCAAAATAGGAGACAGTAAGTGGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGAAAAATTAAGAATAATATGCAAAATAGGAGACAGTAAGTGGT  783

seq1  ACCTATACTTCAGACATAAACTTAATATCCAGAGTGTCAGGTCAATAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACTTCAGACATAAACTTAATATCCAGAGTGTCAGGTCAATAAAA  833

seq1  AAAAAGTCTCTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAG  883

seq1  AGGTATTGCTGGATCAGTACTATGTCCAATTTTCTAAGGAACCGCCAGAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGCTGGATCAGTACTATGTCCAATTTTCTAAGGAACCGCCAGAC  933

seq1  TGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGA  983

seq1  GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT  1033

seq1  TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT  1083

seq1  GATTTGCATTTTCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCATTTTCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  1133

seq1  TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  1177
      ||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  1167