BAC Information

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BAC

Clone NameB6Ng01-244B21
Chromosome18 (Build37)
Map Location 36,442,802 - 36,556,024
singlet/doubletdoublet
Overlap genePura, 0610010O12Rik
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531
Downstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244B21.bB6Ng01-244B21.g
ACCGA053331GA053332
length1,083450
definitionB6Ng01-244B21.b B6Ng01-244B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,554,943 - 36,556,024)(36,442,802 - 36,443,257)
sequence
gaattcattctgcttttgtatttctgaattttccatgctgttggaagaag
gaaacaagccacaaagagaatcccaaatggccgtttcctgcttggcgagc
actcagataagccccaaggggaagaaatccttagcaaatagtgcttccgt
ttagtgagacagaaaaccagagtcctttgatcctggggccagccgggact
tcatgggaggggacaggagagcagcaactactcagtaccttctggaccac
agctggcactcaggtcagattagaggaaccgtgagtgggaaccagggaag
acatcgctgtgaggatcaaagaggaaggagtcaagtatgggaagctacaa
aatgtactctagtgctccaaacccagcgtgggggccactacagccgacga
cagagatcagtgtctcacatcacatatatatcctaatgcaggacttatgt
tggtttttggaacagggtttctctatgtagcccggacaggactaccactc
acgactgaaaccaaactggccttaaactcacagaagcctgcctgcctgcc
tgcctctgtgattggaagcttgtgcccccacacctggctctaatgcagtt
tttagagaaataattatgggtgtgtctgttaatcaaagctgctcatgttt
cctgcacagcagttctgtgtcctgacaagtcctcatgaacctcgtgtgct
ggcccacatcaacagaaacagcctcatcatgatggggcctcagctccagt
caccacacacagcaagtgagagcaagaacatacacaacgctggaaagacc
ctagtttaaagacttgtcaggctggggtctcggccaaggcgacacagtaa
gaccctgcctcaaataagaaagaaggccaggctccacaatgatctagatc
aaatgcaatttccataaaaatcataagacatatcattgaataaagttatg
gaaatacaaagaactgtgatatttaaaacagattccctaataaagtacag
tagtcgaacagttaactgtactcatgatagtgtctattgtctcctggaat
ctagggatacagagataacagaaaaaggctagc
ctctgctttgaatatttgcagcctaacattttggtggtttttaatgattt
aagtcttgaagataattgtctacttttacccagtgagcacttggattaag
ttccagtgctctctttttgggtgtggggtggggatgaaatttgtgctttg
taagtactaatatgttgcttctgttgggagctatataatcaagagtttac
tatccagaagtaaatagcctcctcaagtttgttttattaactatgtgttg
ggtttctttttcctttaaaagtaaaagatgaattacattatttcagaatc
acctgttgtttaagcagggggaaactgaggttttattttccttcttggtc
tatcttagaatgtgtccttgtgagaaaaaaaagattgtggataagtttgt
tgactatgtagtgattaatcttttttttttactattcggttctctttaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36554943_36556024
seq2: B6Ng01-244B21.b_47_1129 (reverse)

seq1  GCTAGCCTTTTTCTGTTATCTCTGTATCCCTAGATCCAAGGAGAC-ATAG  49
      ||||||||||||||||||||||||||||||||||| | ||||||| ||||
seq2  GCTAGCCTTTTTCTGTTATCTCTGTATCCCTAGATTCCAGGAGACAATAG  50

seq1  ACACTAATCATGAGTACAGTTAACTG-TCGACTACTGTACTTTA-TAGGG  97
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  ACACT-ATCATGAGTACAGTTAACTGTTCGACTACTGTACTTTATTAGGG  99

seq1  AATCTTGTTTTAAATATCACAGTTCTTTTGTATTTCCATAAACTTTA-TC  146
      |||| |||||||||||||||||||| ||||||||||||| ||||||| ||
seq2  AATC-TGTTTTAAATATCACAGTTC-TTTGTATTTCCAT-AACTTTATTC  146

seq1  AATGATATGTCTTATGATTTTTATTGGAATTGCATTTGATCTAGATCATT  196
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  AATGATATGTCTTATGATTTTTATGGAAATTGCATTTGATCTAGATCATT  196

seq1  GTGGAGCCTGGCCTTCTTTCTTATTTGAGGCAGGGTCTTACTGTGTCGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCCTGGCCTTCTTTCTTATTTGAGGCAGGGTCTTACTGTGTCGCC  246

seq1  TTGGCCGAGACCCCAGCCTGACAAGTCTTT-AACTAGGGTCTTTCCAGCG  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGGCCGAGACCCCAGCCTGACAAGTCTTTAAACTAGGGTCTTTCCAGCG  296

seq1  TTGTGTATGTTCTTGCTCTCACTTGCTGTGTGTGGTGACTGGAGCTGAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGTTCTTGCTCTCACTTGCTGTGTGTGGTGACTGGAGCTGAGG  346

seq1  CCCCATCATGATGAGGCTGTTTCTGTTGATGTGGGCCAGCACACGAGGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCATGATGAGGCTGTTTCTGTTGATGTGGGCCAGCACACGAGGTT  396

seq1  CATGAGGACTTGTCAGGACACAGAACTGCTGTGCAGGAAACATGAGCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGACTTGTCAGGACACAGAACTGCTGTGCAGGAAACATGAGCAGC  446

seq1  TTTGATTAACAGACACACCCATAATTATTTCTCTAAAAACTGCATTAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAACAGACACACCCATAATTATTTCTCTAAAAACTGCATTAGAG  496

seq1  CCAGGTGTGGGGGCACAAGCTTCCAATCACAGAGGCAGGCAGGCAGGCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGGGGGCACAAGCTTCCAATCACAGAGGCAGGCAGGCAGGCAG  546

seq1  GCTTCTGTGAGTTTAAGGCCAGTTTGGTTTCAGTCGTGAGTGGTAGTCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTGAGTTTAAGGCCAGTTTGGTTTCAGTCGTGAGTGGTAGTCCT  596

seq1  GTCCGGGCTACATAGAGAAACCCTGTTCCAAAAACCAACATAAGTCCTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGCTACATAGAGAAACCCTGTTCCAAAAACCAACATAAGTCCTGC  646

seq1  ATTAGGATATATATGTGATGTGAGACACTGATCTCTGTCGTCGGCTGTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATATATATGTGATGTGAGACACTGATCTCTGTCGTCGGCTGTAG  696

seq1  TGGCCCCCACGCTGGGTTTGGAGCACTAGAGTACATTTTGTAGCTTCCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCCACGCTGGGTTTGGAGCACTAGAGTACATTTTGTAGCTTCCCA  746

seq1  TACTTGACTCCTTCCTCTTTGATCCTCACAGCGATGTCTTCCCTGGTTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACTCCTTCCTCTTTGATCCTCACAGCGATGTCTTCCCTGGTTCC  796

seq1  CACTCACGGTTCCTCTAATCTGACCTGAGTGCCAGCTGTGGTCCAGAAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGGTTCCTCTAATCTGACCTGAGTGCCAGCTGTGGTCCAGAAGG  846

seq1  TACTGAGTAGTTGCTGCTCTCCTGTCCCCTCCCATGAAGTCCCGGCTGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTAGTTGCTGCTCTCCTGTCCCCTCCCATGAAGTCCCGGCTGGC  896

seq1  CCCAGGATCAAAGGACTCTGGTTTTCTGTCTCACTAAACGGAAGCACTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCAAAGGACTCTGGTTTTCTGTCTCACTAAACGGAAGCACTAT  946

seq1  TTGCTAAGGATTTCTTCCCCTTGGGGCTTATCTGAGTGCTCGCCAAGCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGGATTTCTTCCCCTTGGGGCTTATCTGAGTGCTCGCCAAGCAG  996

seq1  GAAACGGCCATTTGGGATTCTCTTTGTGGCTTGTTTCCTTCTTCCAACAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGCCATTTGGGATTCTCTTTGTGGCTTGTTTCCTTCTTCCAACAG  1046

seq1  CATGGAAAATTCAGAAATACAAAAGCAGAATGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAATTCAGAAATACAAAAGCAGAATGAATTC  1083

seq1: chr18_36442802_36443257
seq2: B6Ng01-244B21.g_64_519

seq1  GAATTCCTCTGCTTTGAATATTTGCAGCCTAACATTTTGGTGGTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCTTTGAATATTTGCAGCCTAACATTTTGGTGGTTTTTAA  50

seq1  TGATTTAAGTCTTGAAGATAATTGTCTACTTTTACCCAGTGAGCACTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAGTCTTGAAGATAATTGTCTACTTTTACCCAGTGAGCACTTGG  100

seq1  ATTAAGTTCCAGTGCTCTCTTTTTGGGTGTGGGGTGGGGATGAAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCCAGTGCTCTCTTTTTGGGTGTGGGGTGGGGATGAAATTTGT  150

seq1  GCTTTGTAAGTACTAATATGTTGCTTCTGTTGGGAGCTATATAATCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAGTACTAATATGTTGCTTCTGTTGGGAGCTATATAATCAAGA  200

seq1  GTTTACTATCCAGAAGTAAATAGCCTCCTCAAGTTTGTTTTATTAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTATCCAGAAGTAAATAGCCTCCTCAAGTTTGTTTTATTAACTAT  250

seq1  GTGTTGGGTTTCTTTTTCCTTTAAAAGTAAAAGATGAATTACATTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGTTTCTTTTTCCTTTAAAAGTAAAAGATGAATTACATTATTTC  300

seq1  AGAATCACCTGTTGTTTAAGCAGGGGGAAACTGAGGTTTTATTTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACCTGTTGTTTAAGCAGGGGGAAACTGAGGTTTTATTTTCCTTC  350

seq1  TTGGTCTATCTTAGAATGTGTCCTTGTGAGAAAAAAAAAGATTGTGGATA  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGGTCTATCTTAGAATGTGTCCTTGTGAG-AAAAAAAAGATTGTGGATA  399

seq1  AGTTTGTTGACTATGTAGTGATTAATCTTTTTTTTTTATTATT-GGTTCT  449
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGTTTGTTGACTATGTAGTGATTAATCTTTTTTTTTTACTATTCGGTTCT  449

seq1  CTTTAAA  456
      |||||||
seq2  CTTTAAA  456