BAC Information

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BAC

Clone NameB6Ng01-244G09
Chromosome18 (Build37)
Map Location 12,415,336 - 12,543,356
singlet/doubletdoublet
Overlap geneAnkrd29, Lama3
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1
Downstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G09.bB6Ng01-244G09.g
ACCGA053543GA053544
length1,117880
definitionB6Ng01-244G09.b B6Ng01-244G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,415,336 - 12,416,455)(12,542,479 - 12,543,356)
sequence
gaattctctcctctcttttctgacacgtgtgtttttctgtttgggggtgg
gggaaaaggacttgctacacagcctgggagggcacagatttccttagttt
cctgagtgctgagactacagtacaggcctgtgccaccatgccaaattaag
gtgtagtttcatattaacagccacatgggatctggaagcatatcacgaac
cactttgtactttgttgcatggaaatctacaggttttagcattagttaca
acatttgaaatatattagcttactgagccatgcactttgtgcaaatattg
gcatgtttcttttttgccacatcaaaaagtcacattcacagaaagtcaca
ttcagtaaaactacaattaataaatcagaaaagactctctggactggtaa
gctattaagcccaactgttgctctgccaaataaacctggggccagtgagt
ggctcagccagtagaacttgggttcagggcttacccattgaattcaatcc
cctgaccaatctctgggtcccaaaaagtagccagagatttgacctctgat
ctccacacacactgtgcacatgggtgtctgccctctttctcacacatatg
cacaaaataaataactcaaatagaaatggtgattgatttaaaaagtggtc
atttccccctgcaaattcaatatctccacaagagtttttcttgagacacc
tgtactccagtacataatgactggaattgtttttcactgtttcatgaaca
gtataaaaaatatgtagtaagagtcaaaatttaataaacctgctatttcc
actgttccatctagtaaaacatttagcaaagcgaatacagcagctagctt
agccatcgcagtctttgcgaaaggttcaacagcatcatacagctcatacc
agtctgtactgtgattcctccttgccctattcctcctcagattctcagct
caacgaaggcagaactgttacattatgtcccagagtagagtagagtacac
agtacctagtagtgtttcaagagatttgttaaatgattgagagtccagag
tctttcaaggccaggtattgtctggtaaatcttagaacttagggggtgga
gacagagatagctattc
gaattccccaagtgtggagtgtttgcaccagtggtagcttgggagctcac
tcttcagttagagagagaggtggagacaagaacacccttgtggcctatga
gcccaggaaataaatggttgcttacacacacacacacacacacacacaca
cacacacacacacacacacacacacaaacacacacacacacagtttctcc
tggaggaaaatgcaataggagaatgggaagtgagaagccagagagagaag
gacagatgtagaaatagggagagaagaggcactatgaaggggagagcaaa
aggaagaaggtccagaggcagaaaatgcatccagggtcacctggaggtca
gagacaggagcacaggctctgccagtgagggcaggatccacagaacgcag
ctgggagaggagaccccaggctcaactcctcaccagcacacagacttaac
tcaagctgtctcctgaacctccctgacgagatcctgaactctgcctttcc
tttatatacttccatatgtgtattcccttgtactctctcgccatggatag
taataaaacagcaatgatttaaagccaaaatggacttgaaagtttctcca
gagaaaagatacaagcttgttttcaagatttgctaagggataaaaatgct
cctttaaaaaactcaacttccatttgctggatattttctgattctgttgg
catttaaagatctcagaaggccacgctccttctggatgaaaaatcaggtt
gaaggcattctgggggagacaccaggacagctccaaggtggctcttccat
acatcccttaagtcctcccagggagccattgttgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtagtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12415336_12416455
seq2: B6Ng01-244G09.b_42_1158

seq1  GAATTCTCTCCTCTCTTTTCTGACACGTGTGTTTTTCTGTTTGGGGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTCTTTTCTGACACGTGTGTTTTTCTGTTTGGGGGTGG  50

seq1  GGGAAAAGGACTTGCTACACAGCCTGGGAGGGCACAGATTTCCTTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGACTTGCTACACAGCCTGGGAGGGCACAGATTTCCTTAGTTT  100

seq1  CCTGAGTGCTGAGACTACAGTACAGGCCTGTGCCACCATGCCAAATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCTGAGACTACAGTACAGGCCTGTGCCACCATGCCAAATTAAG  150

seq1  GTGTAGTTTCATATTAACAGCCACATGGGATCTGGAAGCATATCACGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTTCATATTAACAGCCACATGGGATCTGGAAGCATATCACGAAC  200

seq1  CACTTTGTACTTTGTTGCATGGAAATCTACAGGTTTTAGCATTAGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTACTTTGTTGCATGGAAATCTACAGGTTTTAGCATTAGTTACA  250

seq1  ACATTTGAAATATATTAGCTTACTGAGCCATGCACTTTGTGCAAATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAATATATTAGCTTACTGAGCCATGCACTTTGTGCAAATATTG  300

seq1  GCATGTTTCTTTTTTGCCACATCAAAAAGTCACATTCACAGAAAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCTTTTTTGCCACATCAAAAAGTCACATTCACAGAAAGTCACA  350

seq1  TTCAGTAAAACTACAATTAATAAATCAGAAAAGACTCTCTGGACTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAAACTACAATTAATAAATCAGAAAAGACTCTCTGGACTGGTAA  400

seq1  GCTATTAAGCCCAACTGTTGCTCTGCCAAATAAACCTGGGGCCAGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAGCCCAACTGTTGCTCTGCCAAATAAACCTGGGGCCAGTGAGT  450

seq1  GGCTCAGCCAGTAGAACTTGGGTTCAGGGCTTACCCATTGAATTCAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCAGTAGAACTTGGGTTCAGGGCTTACCCATTGAATTCAATCC  500

seq1  CCTGACCAATCTCTGGGTCCCAAAAAGTAGCCAGAGATTTGACCTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAATCTCTGGGTCCCAAAAAGTAGCCAGAGATTTGACCTCTGAT  550

seq1  CTCCACACACACTGTGCACATGGGTGTCTGCCCTCTTTCTCACACATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACACACTGTGCACATGGGTGTCTGCCCTCTTTCTCACACATATG  600

seq1  CACAAAATAAATAACTCAAATAGAAATGGTGATTGATTTAAAAAGTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATAAATAACTCAAATAGAAATGGTGATTGATTTAAAAAGTGGTC  650

seq1  ATTTCCCCCTGCAAATTCAATATCTCCACAAGAGTTTTTCTTGAGACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCCTGCAAATTCAATATCTCCACAAGAGTTTTTCTTGAGACACC  700

seq1  TGTACTCCAGTACATAATGACTGGAATTGTTTTTCACTGTTTCATGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCAGTACATAATGACTGGAATTGTTTTTCACTGTTTCATGAACA  750

seq1  GTATAAAAAATATGTAGTAAGAGTCAAAATTTAATAAACCTGCTATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAAATATGTAGTAAGAGTCAAAATTTAATAAACCTGCTATTTCC  800

seq1  ACTGTTCCATCTAGTAAAACATTTAGCAAAGCGAATACAGCAGCTAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCATCTAGTAAAACATTTAGCAAAGCGAATACAGCAGCTAGCTT  850

seq1  AGCCATCGCAGTCTTTGCG-AAGGTTCAACAGCATCATACAGCTCATACC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCCATCGCAGTCTTTGCGAAAGGTTCAACAGCATCATACAGCTCATACC  900

seq1  AGTCTGTACTGTGATTCCTCCTTGCCCTATTCCTCCTCAGAATTCTCAGC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTCTGTACTGTGATTCCTCCTTGCCCTATTCCTCCTCAG-ATTCTCAGC  949

seq1  TCAACGAAAGCAGAAACTG-TACATTATGTCCCCAGAGTAGAGTAGAGTA  998
      |||||||| |||| ||||| |||||||||| |||||||||||||||||||
seq2  TCAACGAAGGCAG-AACTGTTACATTATGT-CCCAGAGTAGAGTAGAGTA  997

seq1  CACAGTACCTAGTAAGTGTTCAAAGAGATTTGTTAAATGATTGAGAGTCC  1048
      ||||||||||||| ||||||  ||||||||||||||||||||||||||||
seq2  CACAGTACCTAGT-AGTGTTTCAAGAGATTTGTTAAATGATTGAGAGTCC  1046

seq1  AGAGTCCTTTCCAAAGCCA-GTA-TGTCTG--TAATCCTAGGACTTAGGG  1094
      ||||||  || ||| |||| ||| ||||||   |||| ||| ||||||||
seq2  AGAGTC--TTTCAAGGCCAGGTATTGTCTGGTAAATCTTAGAACTTAGGG  1094

seq1  GGTGGAGACAGGAGGATTAGCTATTC  1120
      |||||||||| |||   |||||||||
seq2  GGTGGAGACA-GAG--ATAGCTATTC  1117

seq1: chr18_12542479_12543356
seq2: B6Ng01-244G09.g_66_945 (reverse)

seq1  ACACACAC-ACACACACACACACACACACACACACACACACACACACAAC  49
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTACACACACACACACACACACACACACACACACACACACAAC  50

seq1  AATGGCT-CCTGGGAGGACTTAAGGGATGTATGGAAGAGCCACCTTGGAG  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCCCTGGGAGGACTTAAGGGATGTATGGAAGAGCCACCTTGGAG  100

seq1  CTGTCCTGGTGTCTCCCCCAGAATGCCTTCAACCTGATTTTTCATCCAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGTGTCTCCCCCAGAATGCCTTCAACCTGATTTTTCATCCAGA  150

seq1  AGGAGCGTGGCCTTCTGAGATCTTTAAATGCCAACAGAATCAGAAAATAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCGTGGCCTTCTGAGATCTTTAAATGCCAACAGAATCAGAAAATAT  200

seq1  CCAGCAAATGGAAGTTGAGTTTTTTAAAGGAGCATTTTTATCCCTTAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATGGAAGTTGAGTTTTTTAAAGGAGCATTTTTATCCCTTAGCA  250

seq1  AATCTTGAAAACAAGCTTGTATCTTTTCTCTGGAGAAACTTTCAAGTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAAAACAAGCTTGTATCTTTTCTCTGGAGAAACTTTCAAGTCCA  300

seq1  TTTTGGCTTTAAATCATTGCTGTTTTATTACTATCCATGGCGAGAGAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTTAAATCATTGCTGTTTTATTACTATCCATGGCGAGAGAGTA  350

seq1  CAAGGGAATACACATATGGAAGTATATAAAGGAAAGGCAGAGTTCAGGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATACACATATGGAAGTATATAAAGGAAAGGCAGAGTTCAGGAT  400

seq1  CTCGTCAGGGAGGTTCAGGAGACAGCTTGAGTTAAGTCTGTGTGCTGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAGGGAGGTTCAGGAGACAGCTTGAGTTAAGTCTGTGTGCTGGTG  450

seq1  AGGAGTTGAGCCTGGGGTCTCCTCTCCCAGCTGCGTTCTGTGGATCCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGAGCCTGGGGTCTCCTCTCCCAGCTGCGTTCTGTGGATCCTGC  500

seq1  CCTCACTGGCAGAGCCTGTGCTCCTGTCTCTGACCTCCAGGTGACCCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGGCAGAGCCTGTGCTCCTGTCTCTGACCTCCAGGTGACCCTGG  550

seq1  ATGCATTTTCTGCCTCTGGACCTTCTTCCTTTTGCTCTCCCCTTCATAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTCTGCCTCTGGACCTTCTTCCTTTTGCTCTCCCCTTCATAGT  600

seq1  GCCTCTTCTCTCCCTATTTCTACATCTGTCCTTCTCTCTCTGGCTTCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTCTCCCTATTTCTACATCTGTCCTTCTCTCTCTGGCTTCTCA  650

seq1  CTTCCCATTCTCCTATTGCATTTTCCTCCAGGAGAAACTGTGTGTGTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATTCTCCTATTGCATTTTCCTCCAGGAGAAACTGTGTGTGTGTG  700

seq1  TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  750

seq1  TGTGTGTAAGCAACCATTTATTTCCTGGGCTCATAGGCCACAAGGGTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAAGCAACCATTTATTTCCTGGGCTCATAGGCCACAAGGGTGTT  800

seq1  CTTGTCTCCACCTCTCTCTCTAACTGAAGAGTGAGCTCCCAAGCTACCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCCACCTCTCTCTCTAACTGAAGAGTGAGCTCCCAAGCTACCAC  850

seq1  TGGTGCAAACACTCCACACTTGGGGAATTC  878
      ||||||||||||||||||||||||||||||
seq2  TGGTGCAAACACTCCACACTTGGGGAATTC  880