BAC Information

Click to search

BAC

Clone NameB6Ng01-244L04
Chromosome18 (Build37)
Map Location 51,801,907 - 51,941,709
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244L04.bB6Ng01-244L04.g
ACCGA053768GA053769
length1,1401,006
definitionB6Ng01-244L04.b B6Ng01-244L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,940,552 - 51,941,709)(51,801,907 - 51,802,914)
sequence
gaattcaggactcattacactttgtagataaaaaaaaaaaaaaactttat
tcatgctcacagctggcacaagatctcaacagaggatctcaacaagaaca
atattctaggttatatcctacctaaaacaacgatgacagtaagtgcaatc
aatattatccattttaaaatatttgtggtgttactaatataattaacaga
ttatcaggattttgccattaaattagaagaactgccagtggggtatctct
aagctgttgggacagggcaccaagagttaattgaaatctagaaagacttc
cttcaaccctgagtctgcttagcataaaactggtaaaaatgaaaacaaaa
taaaacaaccaaaccagaaggaagttagacaactgagccaagtgtatgtt
tgaagtcaaagggattaggatgacataaaatgaattgaaggggcaagaaa
agctgacaagaagaatctcacaggactatacattaatccacttttaataa
agactaccaaaattctccagcctatcaaatgtgaagcacatcaatagatt
tttgaaattctactctaatatgtcagaaattttgcctttactactagttt
aagttagtagaagcattccagaaagtgacactcatccaggtttcctgtcc
ttctcctgatagcccattttccagctgatgtcagatggttcagaggcccc
cacttcagccagtccctcaaggtatagagattttgaaacaaagtattaga
aactaaccttgtgcatttgcatattagaaaaatcatctgttacacagagg
gagcttgctaaacctgatcagacaagttgaactcagaaaaggtttagaat
agctgtataatttaactaaagcatcattagttttctaaacacgtgcctag
aaacaaatttcagtgctggctgaaacaaaatagcccggattcctttagag
agttgcaatgagaagctctgagagttggctaagaaaagtcatattttttg
tacaaagtgtgacagacacatgctatacgcaaaatcttgtccaaatattt
cagagcattcaggaagctgtgacagccagtgagccttcagagataggcac
tgtttggtacaggctactatgtatgctgagaccaaggaac
gaattctctctaatccctttgtcgatatcgttcccatgtcctaagcatca
gccacaagccacacgttccccacttctattccactctagttcagttttct
aagaaggaaaaaaataaacaaacaaaaacaaaaagaaaaaaaaaaacaaa
gacttctgattgttcatcatgtgaacagttattctctcagctatccagga
cagagtgggaaaatctgtacctagcttcagagacattggttaccttcaac
tcctcagcttttctgaatttgaaatcttagggagacctttgacttagtaa
ggtcatcttagaagcttgggacacagaattgaggacatttaattgaccac
accctttattaatgaaaaaatgaaactttaaaatggattatcaaagccag
caagtgagttgtgagtttgttacgaactatacatcctcctacagactttt
gcttgtgtaggcagccctatatgatcatactgattgattgagatcacatt
gatttaattaaatagaattttcaagacccagagtgtattcttccaaaata
ccatgcagtaaaaattacagaaataatggtgctcatgtcagtgccactcc
taacttgataattaggatgagctttcagtcagtgagtacacagactactc
agtcttccagatactttaatttttccattacaatgtgctaattcatcaca
taaaatccctagttctcctctaaaatttaaacaacaacaacaaaaaccac
aaacttatgtagcttggctttctcgtggaactcccaacagtgggagttgg
gaggtatgtctctgactatttcttgttttgaggacccttttccttctgct
gggttgccttgctcagccttcattcatacaaagggaggtaccctgtctta
ttgtaatttgataggccgtgtttgggttgatttctttgggaaccggtctt
tttctaaaagcacagaggagagttgatacggtgagggactgggagggatg
gatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51940552_51941709
seq2: B6Ng01-244L04.b_45_1184 (reverse)

seq1  GTTCCTTGTGTCTTCAAAGCATAACCATAGTAG-CTGTACAAAACAGTGG  49
      |||||||| ||||    ||||||  |||||||| |||||| ||||||| |
seq2  GTTCCTTG-GTCT---CAGCATA--CATAGTAGCCTGTACCAAACAGT-G  43

seq1  GCTATCTCCTGAAAGCTCACTTGCCTGTCACAGCCTTCCCTGAATGGCTC  99
       |||||| ||||| |||||| || ||||||||||  | ||||||| ||||
seq2  CCTATCT-CTGAAGGCTCAC-TGGCTGTCACAGC--TTCCTGAAT-GCTC  88

seq1  TTGAAATATTTGGACAAGATTTTGCGTTAATTAGCATTGTGTTCTGTCAC  149
       ||||||||||||||||||||||||||    ||||| |||| ||||||||
seq2  -TGAAATATTTGGACAAGATTTTGCGT---ATAGCA-TGTG-TCTGTCAC  132

seq1  ACCTTTGTACAAAAATTATTGACTTTTCTTAGCCAACTCTCAGAGCTTCT  199
      | ||||||||||||| || |||||||||||||||||||||||||||||||
seq2  A-CTTTGTACAAAAAATA-TGACTTTTCTTAGCCAACTCTCAGAGCTTCT  180

seq1  CATTGCAACTCTCT-AAGGAATCCGGGCTATTTTGTTTCAGCCAGCACTG  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTGCAACTCTCTAAAGGAATCCGGGCTATTTTGTTTCAGCCAGCACTG  230

seq1  AAATTTGTTTCTAGGCACGTGTTTAGAAAACTAATGATGCTTTAGTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTTCTAGGCACGTGTTTAGAAAACTAATGATGCTTTAGTTAAA  280

seq1  TTATACAGCTATTCTAAACCTTTTCTGAGTTCAACTTGTCTGATCAGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGCTATTCTAAACCTTTTCTGAGTTCAACTTGTCTGATCAGGTT  330

seq1  TAGCAAGCTCCCTCTGTGTAACAGATGATTTTTCTAATATGCAAATGCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCTCCCTCTGTGTAACAGATGATTTTTCTAATATGCAAATGCAC  380

seq1  AAGGTTAGTTTCTAATACTTTGTTTCAAAATCTCTATACCTTGAGGGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGTTTCTAATACTTTGTTTCAAAATCTCTATACCTTGAGGGACT  430

seq1  GGCTGAAGTGGGGGCCTCTGAACCATCTGACATCAGCTGGAAAATGGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGTGGGGGCCTCTGAACCATCTGACATCAGCTGGAAAATGGGCT  480

seq1  ATCAGGAGAAGGACAGGAAACCTGGATGAGTGTCACTTTCTGGAATGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGAAGGACAGGAAACCTGGATGAGTGTCACTTTCTGGAATGCTT  530

seq1  CTACTAACTTAAACTAGTAGTAAAGGCAAAATTTCTGACATATTAGAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAACTTAAACTAGTAGTAAAGGCAAAATTTCTGACATATTAGAGTA  580

seq1  GAATTTCAAAAATCTATTGATGTGCTTCACATTTGATAGGCTGGAGAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAAAAATCTATTGATGTGCTTCACATTTGATAGGCTGGAGAATT  630

seq1  TTGGTAGTCTTTATTAAAAGTGGATTAATGTATAGTCCTGTGAGATTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGTCTTTATTAAAAGTGGATTAATGTATAGTCCTGTGAGATTCTT  680

seq1  CTTGTCAGCTTTTCTTGCCCCTTCAATTCATTTTATGTCATCCTAATCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGCTTTTCTTGCCCCTTCAATTCATTTTATGTCATCCTAATCCC  730

seq1  TTTGACTTCAAACATACACTTGGCTCAGTTGTCTAACTTCCTTCTGGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCAAACATACACTTGGCTCAGTTGTCTAACTTCCTTCTGGTTT  780

seq1  GGTTGTTTTATTTTGTTTTCATTTTTACCAGTTTTATGCTAAGCAGACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTATTTTGTTTTCATTTTTACCAGTTTTATGCTAAGCAGACTC  830

seq1  AGGGTTGAAGGAAGTCTTTCTAGATTTCAATTAACTCTTGGTGCCCTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGAAGGAAGTCTTTCTAGATTTCAATTAACTCTTGGTGCCCTGTC  880

seq1  CCAACAGCTTAGAGATACCCCACTGGCAGTTCTTCTAATTTAATGGCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCTTAGAGATACCCCACTGGCAGTTCTTCTAATTTAATGGCAAA  930

seq1  ATCCTGATAATCTGTTAATTATATTAGTAACACCACAAATATTTTAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATAATCTGTTAATTATATTAGTAACACCACAAATATTTTAAAAT  980

seq1  GGATAATATTGATTGCACTTACTGTCATCGTTGTTTTAGGTAGGATATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATATTGATTGCACTTACTGTCATCGTTGTTTTAGGTAGGATATAA  1030

seq1  CCTAGAATATTGTTCTTGTTGAGATCCTCTGTTGAGATCTTGTGCCAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATATTGTTCTTGTTGAGATCCTCTGTTGAGATCTTGTGCCAGCT  1080

seq1  GTGAGCATGAATAAAGTTTTTTTTTTTTTTTATCTACAAAGTGTAATGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATGAATAAAGTTTTTTTTTTTTTTTATCTACAAAGTGTAATGAG  1130

seq1  TCCTGAATTC  1158
      ||||||||||
seq2  TCCTGAATTC  1140

seq1: chr18_51801907_51802914
seq2: B6Ng01-244L04.g_65_1070

seq1  GAATTCTCTCTAATCCCTTTGTCGATATCGTTCCCATGTCCTAAGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAATCCCTTTGTCGATATCGTTCCCATGTCCTAAGCATCA  50

seq1  GCCACAAGCCACACGTTCCCCACTTCTATTCCACTCTAGTTCAGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGCCACACGTTCCCCACTTCTATTCCACTCTAGTTCAGTTTTCT  100

seq1  AAGAAGGAAAAAAATAAACAAACAAAAACAAAAAGAAAAAAAAAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAAAAAATAAACAAACAAAAACAAAAAGAAAAAAAAAAACAAA  150

seq1  GACTTCTGATTGTTCATCATGTGAACAGTTATTCTCTCAGCTATCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGATTGTTCATCATGTGAACAGTTATTCTCTCAGCTATCCAGGA  200

seq1  CAGAGTGGGAAAATCTGTACCTAGCTTCAGAGACATTGGTTACCTTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGAAAATCTGTACCTAGCTTCAGAGACATTGGTTACCTTCAAC  250

seq1  TCCTCAGCTTTTCTGAATTTGAAATCTTAGGGAGACCTTTGACTTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTTTTCTGAATTTGAAATCTTAGGGAGACCTTTGACTTAGTAA  300

seq1  GGTCATCTTAGAAGCTTGGGACACAGAATTGAGGACATTTAATTGACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTTAGAAGCTTGGGACACAGAATTGAGGACATTTAATTGACCAC  350

seq1  ACCCTTTATTAATGAAAAAATGAAACTTTAAAATGGATTATCAAAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTATTAATGAAAAAATGAAACTTTAAAATGGATTATCAAAGCCAG  400

seq1  CAAGTGAGTTGTGAGTTTGTTACGAACTATACATCCTCCTACAGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGTTGTGAGTTTGTTACGAACTATACATCCTCCTACAGACTTTT  450

seq1  GCTTGTGTAGGCAGCCCTATATGATCATACTGATTGATTGAGATCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTAGGCAGCCCTATATGATCATACTGATTGATTGAGATCACATT  500

seq1  GATTTAATTAAATAGAATTTTCAAGACCCAGAGTGTATTCTTCCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATTAAATAGAATTTTCAAGACCCAGAGTGTATTCTTCCAAAATA  550

seq1  CCATGCAGTAAAAATTACAGAAATAATGGTGCTCATGTCAGTGCCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGTAAAAATTACAGAAATAATGGTGCTCATGTCAGTGCCACTCC  600

seq1  TAACTTGATAATTAGGATGAGCTTTCAGTCAGTGAGTACACAGACTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGATAATTAGGATGAGCTTTCAGTCAGTGAGTACACAGACTACTC  650

seq1  AGTCTTCCAGATACTTTAATTTTTCCATTACAATGTGCTAATTCATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAGATACTTTAATTTTTCCATTACAATGTGCTAATTCATCACA  700

seq1  TAAAATCCCTAGTTCTCCTCTAAAATTTAAACAACAACAACAAAAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCTAGTTCTCCTCTAAAATTTAAACAACAACAACAAAAACCAC  750

seq1  AAACTTATGTAGCTTGGCTTTCTCGTGGAACTCCCAACAGTGGGAGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATGTAGCTTGGCTTTCTCGTGGAACTCCCAACAGTGGGAGTTGG  800

seq1  GAGGTATGTCTCTGACTATTTCTTGTTTTGAGGACCCTTTTCCTTCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGTCTCTGACTATTTCTTGTTTTGAGGACCCTTTTCCTTCTGCT  850

seq1  GGGTTGCCTTGCTCAGCCTTCATTCATACAAGGGGAGGTACCCTGTCTTA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGTTGCCTTGCTCAGCCTTCATTCATACAAAGGGAGGTACCCTGTCTTA  900

seq1  TTGTAATTTGATAGGCCGTGTTT-GGTTGATTTCTTTGGGAACCGGTCTT  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTAATTTGATAGGCCGTGTTTGGGTTGATTTCTTTGGGAACCGGTCTT  950

seq1  TTCTAAAAAGCAACAGAGGAAGAGTTGATAAGGGTGAGGGACTGGGAGGG  999
      ||   |||||| ||||||| ||||||||| | ||||||||||||||||||
seq2  TTTCTAAAAGC-ACAGAGG-AGAGTTGAT-ACGGTGAGGGACTGGGAGGG  997

seq1  ATGGATGGC  1008
      |||||||||
seq2  ATGGATGGC  1006